BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44360.1
Length=1775
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494550 jgi|Araly1|494550|fgenesh2_kg.8__366__AT5G44360.1 2390 0.0
> Ahg494550 jgi|Araly1|494550|fgenesh2_kg.8__366__AT5G44360.1
Length=1596
Score = 2390 bits (1294), Expect = 0.0
Identities = 1501/1602 (94%), Gaps = 9/1602 (1%)
Strand=Plus/Plus
Query 1 ATGAGAACACTTGAAGCTTTTGCTCTGTCCCTGTTTCTTGTCTTCTTAGTAAAATGGGTC 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGAGAACACTTGAAGCTTTTGCTCTGTCTCTGTTTCTTGTCTTCTTAGTAAAATGGGTC 60
Query 61 AATTCTGACTCTAGTTCTTC-TCCTAGTAAAGATCAATTTCTGAGTTGCATGTCGACACA 119
|||||||| |||| ||| || |||||||| ||| ||||||||||||||||||||||||||
Sbjct 61 AATTCTGATTCTAATTC-TCTTCCTAGTAGAGACCAATTTCTGAGTTGCATGTCGACACA 119
Query 120 TTCTGATTCCAGCTTCATAAACCCTAAAAGCTTCATCCACAAACCAGATTCAAGAGTCTA 179
||||||||| |||||||||||||||||||||||||||||||| |||||||||||| | ||
Sbjct 120 TTCTGATTCAAGCTTCATAAACCCTAAAAGCTTCATCCACAAGCCAGATTCAAGACTTTA 179
Query 180 CACCGATTTCTCGCAGTCTTTAATATCACAAAACTACAGATTTCTGACCTTGAATTTCAC 239
|||| ||||||||||||| || ||||||||||||||||||| |||||||||||||||||
Sbjct 180 CACCAATTTCTCGCAGTC-TT--TATCACAAAACTACAGATTCCTGACCTTGAATTTCAC 236
Query 240 AAGCCAGAAGCCGATTCTGATCGTTACACCAAGAACTGATACTGAAATCCAGAGATCATT 299
|||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 237 AAGCCAAAAGCCGATTCTGATTGTTACACCAAGAACTGATTCTGAAATCCAGAGATCATT 296
Query 300 ACTCTGTAGCAGGAAACTTGGGGTGAAAGTAAGAACCAAAAGCGGTGGTCATGACTATGA 359
||| || || ||||||||||||||| ||||||| || ||||| ||||| |||||||||||
Sbjct 297 ACTATGCAGTAGGAAACTTGGGGTGCAAGTAAGGACTAAAAGTGGTGGCCATGACTATGA 356
Query 360 AGGCCTTTCTTATCTCTCATTACACTCGCCTTTCATCATACTCGATCTCGTTAATGTTCG 419
|||||||||||| |||||||||||||||||||||||||| |||||||| |||||| ||||
Sbjct 357 AGGCCTTTCTTACCTCTCATTACACTCGCCTTTCATCATCCTCGATCTTGTTAATATTCG 416
Query 420 ATCGATCGAGATCAACCTGGCAGATGAAACAGCTTGGGTTGGAGCCGGTGCCACTATCGG 479
|||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 417 ATCGATCGAGATCAACCTCGCAGATGAAACAGCTTGGGTTGGAGCCGGTGCGACGATCGG 476
Query 480 TGAGCTTTACTATAAAATTGCCAAATCAAGTAAGATCCATGGCTTCCCTGCAGGAACATG 539
||||||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 477 TGAGCTTTACTATAACATTGCTAAATCGAGTAAAATCCATGGCTTCCCTGCAGGAACATG 536
Query 540 CCCTAGTGTTGGAGTTGGAGGTCATTTTAGCGGAGGAGGGTTTGGTGCAATGATGAGGAA 599
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 537 TCCTAGTGTTGGAGTTGGAGGTCATTTTAGTGGAGGAGGGTTTGGTGCAATGATGAGGAA 596
Query 600 ACATGGTTTAGCTGCAGATAACGTTGTGGACGCGCGTTTTGTAGACGCAAATGGGAGGAT 659
|||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 597 ACATGGTTTAGCCGCAGATAATGTTGTGGATGCGCGTTTTGTAGACGCAAATGGGAGGAT 656
Query 660 CTACAACAGTAGGAGAGAAATGGGAGAAGATTTGTTCTGGGCCATTAGAGGAGGTGGAGC 719
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 657 CTACAACAGTAGGAGAGAAATGGGAGAAGATTTGTTCTGGGCGATTAGAGGAGGTGGAGC 716
Query 720 AGCTAGCTTTGGTGTTGTACTTTCATGGAAAGTGAAGCTAGTTAGGGTTCCAGAAAAGGT 779
||||| ||||| |||||| | |||||||||||||||||||||||||||||||| |||||
Sbjct 717 TGCTAGTTTTGGGGTTGTAGTATCATGGAAAGTGAAGCTAGTTAGGGTTCCAGAGAAGGT 776
Query 780 TACGTGCTTCAGAAGGAACCTACCGTTGACACAGAACATGACGAAAATTGTTCATAGATG 839
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 777 TACGTGCTTCAGAAGGAACCTACCGTGGACACAGAACATGACGAAAATTGTTCATAGATG 836
Query 840 GCAGCAAATTGCAGCAGAGCTTGACGATAATCTCTTCATCCGAGTCATCGTTTCCATTTC 899
|||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||
Sbjct 837 GCAGCAAATTGCAGCAGAGCTTGAAGATAATCTCTTTATCCGAGTCATTGTTTCCAATTC 896
Query 900 CGGAGGATCAGTTCAAACTACATTCCAAGCAAATTATCTTGGAGGAATCGATAAACTAAT 959
|||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 897 TGGAGGATCTGTTCAAGCTACCTTCCAAGCAAATTATCTTGGAGGAATCGATAAACTAAT 956
Query 960 TCCTCTGATGAATCAGAAGTTTCCGGAATTAGGGTTAACGTTTCAAGACTGTTCGGAAAT 1019
||||| ||||||||||||||||||||||||||||||| ||||||||||||| | |||||
Sbjct 957 ACCTCTAATGAATCAGAAGTTTCCGGAATTAGGGTTAAGGTTTCAAGACTGTACTGAAAT 1016
Query 1020 GACCTGGATCGATTCAATAATGTACTTCAACTGGAAGAAAGGACAACCACTAGAGACTCT 1079
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GACCTGGATCGATTCGATAATGTACTTCAACTGGAAGAAAGGACAACCACTAGAGACTCT 1076
Query 1080 TCTGGATCGAGGACAAAGATACAATGATCTGTATTTCAAAGCCAAATCTGATTTTGTCAA 1139
||| ||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1077 TCTTGATCGAGAACAAAGATACAATGATCTGTATTTCAAAGCAAAATCAGATTTTGTCAA 1136
Query 1140 GAACCCTATTCCTGAAATCGGTCTAGAAGGTATATGGACGAGGTTTCACGAGGTCGAATC 1199
|||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1137 GAACCCAATTCCTGAAATCGGCCTAGAAGGTATATGGAAGAGGTTTCACGAGGTCGAATC 1196
Query 1200 TCCGATAATGATAATGGAGCCATTAGGTGGTAAAATGTATGAGATTGGTGAAACAGAGAC 1259
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1197 TCCGATAATGATAATGGAGCCATTAGGTGGTAAAATGTATGAGATTGGTGAATCGGAGAC 1256
Query 1260 TCCATTCCCACATAGAAGAGGGAATCTATATAATATCCAGTATATGGTTAAATGGAGATT 1319
|||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||| |
Sbjct 1257 TCCATTTCCTCATAGAAGAGGGAATCTATATAATATACAGTATATGGTGAAATGGAGAGT 1316
Query 1320 GAAGGACATTGGAGTGATGGAGAAACATGTGACATGGATGAGATTGCTTTATAGGTATAT 1379
|||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1317 GAAGGAAATTGGAGAGATGGAGAAACATGTGAGATGGATGAGATTGCTTTATAGGTATAT 1376
Query 1380 GAGAGTTTATGTCTCTGCATCGCCAAGAGGAGCTTATTTGAATTACCGAGATCTTGATTT 1439
||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1377 GAGAGTTTATGTCTCTGGATCACCAAGAGGAGCTTATTTGAATTATAGAGATCTTGATTT 1436
Query 1440 AGGTATGAACAGAGG-AGTTAATACGAGCTTTGAAGATGCGAA-ATTATGGGGGTTTAGG 1497
||||||||| | ||| ||| |||| |||||| | |||||| || ||||||||||||||||
Sbjct 1437 AGGTATGAATAAAGGGAGT-AATATGAGCTTCGCAGATGC-AAGATTATGGGGGTTTAGG 1494
Query 1498 TATTTTGGAAGTAATTTCAAGAGATTGGCTATTGTTAAAGGGAAGATTGATCCAACCAAT 1557
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1495 TATTTTGGAAGTAATTTCAAGAGATTGGCTATGGTTAAAGGGAAGATTGATCCAACTAAT 1554
Query 1558 TTCTTCAGGAATGAACAAAGTGTTCCTCCTTTGATTGTCTAA 1599
||||| ||||||||||| ||||||||||||||||| || |||
Sbjct 1555 TTCTTTAGGAATGAACAGAGTGTTCCTCCTTTGATGGTGTAA 1596
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66619838505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5