BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44370.1
Length=1999
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948683 jgi|Araly1|948683|scaffold_800570.1 2272 0.0
> Ahg948683 jgi|Araly1|948683|scaffold_800570.1
Length=1340
Score = 2272 bits (1230), Expect = 0.0
Identities = 1306/1343 (97%), Gaps = 4/1343 (0%)
Strand=Plus/Plus
Query 419 GATCAGAGAAAAGGTCTAACATGAAGTTATCAAATATTCCGCAACGCTATGTAATAGTCT 478
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 GATCAGAGAAAAGGTCTAACATGAAGTTATCAAATATTCCGCAACGCTATGTGATAGTCT 60
Query 479 TCTTAACTTTCCTCAGCACATGTGTGTGTTACATAGAGCGTGTTGGCTTCTCTATTGCAT 538
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTTAACTTTCCTCAGCACTTGTGTGTGTTACATAGAGCGTGTTGGCTTCTCTATTGCAT 120
Query 539 ATACCGTTGCTGCTGATGCTGCTGGGATCAATCAATCGAGTAAAGGAACCATACTTTCTA 598
|||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 ATACTGTTGCTGCAGATGCTGCTGGGATCAATCAATCGAGTAAAGGAACTATACTTTCTA 180
Query 599 CATTCTTTGTTGGCTATGCATGTTCTCAAGTCCCTGGAGGTTGGGCAGCTCAGAAAATTG 658
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CATTCTTTGTTGGCTATGCTTGTTCTCAAGTCCCTGGAGGTTGGGCAGCTCAGAAAATTG 240
Query 659 GGGGAAGGAAAGTTCTTCTTCTGTCGTTTGTTTTATGGTCATCGACGTGTTTCTTGGTTC 718
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 GGGGAAGGAAAGTTCTTCTTCTGTCATTTGTTTTATGGTCATCGACGTGTTTCTTGGTTC 300
Query 719 CACTTGATCCAAACAGAGTCGGGCTTTTGGTTGTTGCCCGTTTACTTGTTGGTGTTGCTC 778
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 CGCTTGATCCAAACAGAGTCGGGCTTTTGGTTTTTGCCCGTTTACTTGTTGGTGTTGCTC 360
Query 779 AAGGTTTCATCTTTCCCTCTATCCACACAGTTTTGGCTCAGTGGGTTCCTCCTCATGAAA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAGGTTTCATCTTTCCCTCTATCCACACAGTTTTGGCTCAGTGGGTTCCTCCTCATGAAA 420
Query 839 GGTCTAGATTGGTTTCGATAACGACATCAGGAATGTATTTAGGTGCAGCTTTAGGAATGT 898
|||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 421 GGTCTAGATTGGTTTCAATAACGACTTCGGGAATGTATTTAGGTGCAGCTTTAGGAATGT 480
Query 899 GGCTTCTCCCTGCTTTAGTTGAGCTTAGAGGTCCGGAATCAGTTTTCTTAGCAGAGGCAT 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGCTTCTCCCTGCTTTAGTTGAGCTTAGAGGTCCGGAATCAGTTTTCTTAGCAGAGGCAT 540
Query 959 TAGCAGGTGTTATATGGTCATTGCTTTGGATTAGGTACGCTACTGACCCACCTCGATCTG 1018
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 541 TAGCAGGTGTTATATGGTCATTGCTTTGGATTAGGTATGCTACTGACCCACCTCGATCTG 600
Query 1019 AGCATCCAAAAGCTGCTGCTGCTGGATTCGGAGGTGCTCTGTTACCGACTAATGTAAACC 1078
||||||| ||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 601 AGCATCCGAAAGCCGCCGCTGCTGGATTCGGAGGTGCTCTTTTACCGACTAATGTAAACC 660
Query 1079 ACCATAAAGTTACTCATATCCCGTGGAAGAAAATCATGCTCAGTTTACCCGTTTGGGCGA 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACCATAAAGTTACTCATATCCCGTGGAAGAAAATCATGCTCAGTTTACCCGTTTGGGCGA 720
Query 1139 TTGTGGTTAACAATTTCACATTCCATTACGCTTTATATGTGTTGATGAACTGGCTTCCAA 1198
| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 721 TCGTGGTTAACAATTTCACATTCCATTATGCTTTATACGTGTTGATGAACTGGCTTCCAA 780
Query 1199 CGTATTTCGAGCTTGGACTCCAGATCAGTCTTCAGGGGATGGATTCATCAAAGATGGTGC 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CGTATTTCGAGCTTGGACTCCAGATCAGTCTTCAGGGGATGGATTCATCAAAGATGGTGC 840
Query 1259 CATACCTCAACATGTTTGTATTCTCCATTGTTGGTGGGTTCATCGCAGACTATTTGATCA 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CATACCTCAACATGTTTGTATTCTCCATTGTTGGTGGGTTCATCGCAGACTATTTGATCA 900
Query 1319 CCAAGAGAATACTCTCGGTAACCAGAACCCGCAAGTTCTTGAACACAGTTGGGTTCCTAA 1378
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 901 CCAAGAGAATACTCTCGGTAACCAGAACCCGAAAGTTCTTGAACACGGTTGGGTTCCTAA 960
Query 1379 TTGCTTCAGCGGCATTGATGGTCTTACC-CATGTTTAGAACAGAAAATGGTGTGATCTTA 1437
||||||||||||||||||||||||| || | |||||||||| ||||||||||||||||||
Sbjct 961 TTGCTTCAGCGGCATTGATGGTCTTGCCTC-TGTTTAGAACTGAAAATGGTGTGATCTTA 1019
Query 1438 TGTTCCTCAGTGGCTCTTGGGTTTTTGGCATTAGGAAGAGCCGGTTTTGCGGTGAACCAT 1497
|||||||| || |||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1020 TGTTCCTCTGTAGCTCTTGGGTTTCTAGCATTAGGAAGAGCCGGTTTTGCGGTGAACCAT 1079
Query 1498 ATGGATATTGCTCCAAGATATGCAGGAATAGTGATGGGAGTTTCAAATACTGCTGGGACA 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ATGGATATTGCTCCAAGATATGCAGGAATAGTGATGGGAGTTTCAAATACTGCTGGGACA 1139
Query 1558 TTAGCTGGAATCATTGGTGTTGATTTGACTGGAAAGCTTCTTGAAGCTTCTAAATTGGTT 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TTAGCTGGAATCATTGGTGTTGATTTGACTGGAAAGCTTCTTGAAGCTTCTAAATTGGTT 1199
Query 1618 TACTCAGATTTGTCACATCCAGAGAGCTGGAGAGTTGTGTTCTTCATCCCGGGTTTGCTC 1677
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TATTCAGATTTGTCACATCCTGAGAGCTGGAGAGTTGTGTTCTTCATCCCGGGTTTGCTC 1259
Query 1678 TGTATCTTTAGCTCTGTTGTGTTTCTGCTGTTTTCTACTGGAGAAAGGATCTTTGATTGA 1737
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1260 TGTATCTTTAGCTCTGTTGTGTTTTTGCTGTTTTCTACAGGAGAAAGGATCTTTGATTGA 1319
Query 1738 GGAAAGaaaaaaaGATCAAAACT 1760
| ||||||||| ||||||||||
Sbjct 1320 GAAAAGAAAAA--GATCAAAACT 1340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75152053385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5