BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44380.1
Length=1848
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948681 jgi|Araly1|948681|scaffold_800568.1 2422 0.0
Ahg330958 jgi|Araly1|330958|fgenesh1_pm.C_scaffold_8000301 1393 0.0
Ahg494546 jgi|Araly1|494546|fgenesh2_kg.8__362__AT5G44400.1 1131 0.0
Ahg356638 jgi|Araly1|356638|fgenesh1_pg.C_scaffold_8000425 536 2e-151
> Ahg948681 jgi|Araly1|948681|scaffold_800568.1
Length=1666
Score = 2422 bits (1311), Expect = 0.0
Identities = 1553/1670 (93%), Gaps = 15/1670 (1%)
Strand=Plus/Plus
Query 52 CTTGCATATTCGCTGCAAGGATGGGAAATTCAAAACCACTCCCTACAATTTCTTGTATTA 111
||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct 1 CTTGCATATTCGCTGCAAGGATGGGGATTTCAAAACCACACCCTACAATTTCTTGTATT- 59
Query 112 TAG-TTTCAGTCTTGTATTTTTCATTCTATTGCATAACACCAACTTCTTCATCAGCCTCC 170
| | ||| ||| || ||| | ||||| |||||||||||||||||||||||||||||||||
Sbjct 60 TTGTTTTTAGTTTTTTATCTCTCATTATATTGCATAACACCAACTTCTTCATCAGCCTCC 119
Query 171 ATCCAAGATCAATTCATAAACTGTGTCAAAAGAAACACACATGTTTCTTTTCCACTCGAG 230
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 120 CTCCAAGATCAATTCATAAACTGTGTCAAAAGAAACACGCATGTTTCTTTTCCACTCGAG 179
Query 231 AAAACGTTATTCACCCCTGCGAAAAACGTCTCTTTGTTCAACCAAGTCCTTGAATCGACG 290
| |||||||| | ||||| |||||||||||| |||||| ||||||||||||||| |||
Sbjct 180 ACTACGTTATTTGCTCCTGCAAAAAACGTCTCTATGTTCAGCCAAGTCCTTGAATCAACG 239
Query 291 GCTCAAAATCTCCAGTTCTTGGCAAAATCCATGCCTAAACCGGGATTCATATTCAGACCG 350
|||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||
Sbjct 240 GCTCAAAATCTCCAGTTCTTGGCAAAATCCTTGCCTAAACCGGGATTCATATTTAGGCCA 299
Query 351 ATTCACCAGTCTCAAGTCCAAGCTTCCATCATTTGTTCAAAGAAACTCGGAATTCATTTT 410
|||||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 300 ATTCACGAGTCTCAAGTCCAAGCTTCTATCATCTGTTCTAAGAAACTCGGAATTCATTTT 359
Query 411 CGTGTTAGAAGTGGCGGTCACGATTTCGAGGCCTTGTCTTATGTTTCACGGATTGAAAAA 470
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 360 CGTGTTAGAAGTGGCGGTCACGATTTCGAGGCCTTGTCTTATGTCTCACGGATTGAAAAA 419
Query 471 CCGTTTATATTACTCGACCTGTCAAAATTGAAACAAATCAATGTTGATATTGAATCCAAT 530
|||||||||||| |||| ||||| ||||||| |||| || |||||||||||||| |||||
Sbjct 420 CCGTTTATATTAATCGATCTGTCGAAATTGAGACAAGTCGATGTTGATATTGAAACCAAT 479
Query 531 AGTGCTTGGGTTCAACCTGGTGCTACGCTTGGTGAGCTTTACTACAGAATTGCAGAGAAG 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGTGCTTGGGTTCAACCTGGTGCTACGCTTGGTGAGCTTTACTACAGAATTGCAGAGAAG 539
Query 591 AGC-AAGATCCATGGATTTCCCGCGGGTTTGTGCACAAGTGTAGGCATAGGTGGGTATAT 649
||| ||| ||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 540 AGCAAAG-TCCATGGATTTCCCGCGGGTTTGTGTACGAGCGTAGGCATAGGTGGGTATAT 598
Query 650 GACAGGCGGTGGATACGGTACCTTGATGAGGAAGTATGGTCTTGCGGGAGATAATGTTCT 709
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GACAGGGGGTGGATACGGTTCCTTGATGAGGAAGTATGGTCTTGCGGGAGATAATGTTCT 658
Query 710 AGACGTAAAGATGGTTGATGCAAATGGTAAATTACTCGACAGAGCCGCGATGGGTGAGGA 769
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 659 AGACGTAAAGATGGTTGATGCAAATGGTAAATTACTCGACAGAACCGCGATGGGTGAGGA 718
Query 770 CCTATTTTGGGCGATTAGAGGAGGCGGTGGAGCGAGTTTCGGGATAGTTCTAGCATGGAA 829
||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 719 CCTATTTTGGGCGCTTAGAGGAGGCGGTGGAGCGAGTTTTGGGATAGTTCTCGCATGGAA 778
Query 830 GATCAAGCTTGTTCCTGTTCCTAAGACTGTTACCGTCTTCACTGTCACCAAAACGTTAGA 889
|||||||||||||||||||||| |||| || ||| ||||||| || |||||||||||| |
Sbjct 779 GATCAAGCTTGTTCCTGTTCCTGAGACCGTAACCATCTTCACCGTTACCAAAACGTTAAA 838
Query 890 ACAAGACGCAAGATTGAAGACTATTTCTAAGTGGCAACAAATTTCATCCAAGATTATTGA 949
|||||||||||||||||||| |||||||||||||||||||||| |||||||| || | ||
Sbjct 839 ACAAGACGCAAGATTGAAGATTATTTCTAAGTGGCAACAAATTGCATCCAAGCTTGTCGA 898
Query 950 AGAGATACACATCCGAGTGGTACTCAGAGCAGCTGGAAATGATGGAAACAAGACTGTGAC 1009
|||| ||||||||||| ||||||||||||| | ||||||| |||||||||||||| | ||
Sbjct 899 AGAGCTACACATCCGATTGGTACTCAGAGCCGTTGGAAATAATGGAAACAAGACTATTAC 958
Query 1010 AATGACCTACCTAGGTCAGTTTCTTGGCGAGAAAGGCACCTTGCTGAAGGTTATGGAGAA 1069
|||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 959 AATGTCCTATTTAGGTCAGTTTCTTGGCGAGAAAGGCACCTTGATGAAGGTTATGGAGAA 1018
Query 1070 GGCTTTTCCAGAACTAGGGTTAACTCAAAAGGATTGTACTGAAATGAGCTGGATTGAAGC 1129
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1019 GGATTTTCCAGAACTAGGGTTAACTCAAAAGGATTGTACCGAAATGAGCTGGATTGAATC 1078
Query 1130 CGCCCTTTTCCATGGTGGATTTCCAACAGGTTCTCCTATTGAAATTTTGCTTCAGCTCAA 1189
| ||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||
Sbjct 1079 CACCCTTTTCCATGGTGGATTTCCAACTGGTTCTCCTATTGAAATTTTGCTTCAACGCAA 1138
Query 1190 GTCGCCTCTAGGAAAAGATTACTTCAAAGCAACGTCGGATTTCGTTAAAGAACCTATTCC 1249
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1139 GTCGCCTTTAGGAAAAGATTACTTCAAAGCAACGTCAGATTTCGTTAAAGAACCTATTCC 1198
Query 1250 TGTGATAGGGCTCAAAGGAATATTCAAAAGATTGATTGAAGGAAACACA-ACATTTCTGA 1308
||| |||||||||||||||| ||||||||||||||||||||||| | | | |||||| |
Sbjct 1199 TGTTTTAGGGCTCAAAGGAATTTTCAAAAGATTGATTGAAGGAAAGATAGA-ATTTCTCA 1257
Query 1309 ACTGGACTCCTTACGGTGGTATGATGTCGAAAATCCCTGAATCTGCGATCCCATTTCCGC 1368
|||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| |
Sbjct 1258 ACTGGACTCCCTACGGTGGTATGATGTCGAAAATCTCTGAATCCGCGATCCCATTTCCTC 1317
Query 1369 ATAGAAACGGAACCCTCTTCAAGATTCTCTATTACGCGAACTGGCTAGAGAATGACAAGA 1428
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 ACAGAAACGGAACCCTCTTCAAGATTCTCTATTACGCGAACTGGCTAGAGAATGACAAGA 1377
Query 1429 CATCGA-G--TAGAAAAATCAACTGGATCAAAGAGATATACAATTACATGGCGCCTTATG 1485
|||||| | |||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1378 CATCGATGAGTAGAAAAATCAAATGGATCAAAGAGATATACAGTTACATGGCGCCTTATG 1437
Query 1486 TCTCAAGCAATCCAAGACAAGCATATGTGAACTACAGAGATCTAGACTTCGGACAGAACA 1545
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 TCTCAAGCAATCCAAGAGAAGCATATGTGAACTACAGAGATCTAGACTTCGGACAGAACG 1497
Query 1546 AGAACAACGCAAAGGTTAACTTCATTGAAGCTAAAATCTGGGGACCTAAGTACTTCAAAG 1605
|||||||| ||||| |||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1498 AGAACAACTCAAAGTTTAACTTCATCGAAGCTAAAATCTGGGGAGCTAAGTACTTCAAAG 1557
Query 1606 GCAATTTTGACAGATTGGTGAAGATTAAAACCAAGGTTGATCCAGAG-AACTTCTTCAGG 1664
|||||| |||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 1558 ACAATTTCAACAGATTGGTGAAGATTAAAACAAAGGTTGATCC-GAATAACTTCTTCAGG 1616
Query 1665 CACGAGCAGAGTATCCCACCTATGCCCT-A-CTAGAAGCTAGGTTCATGA 1712
|||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct 1617 CACGAGCAGAGTATCCCACCTATGCCCTGAAC--GAAGCTAGGTTCATGA 1664
> Ahg330958 jgi|Araly1|330958|fgenesh1_pm.C_scaffold_8000301
Length=1626
Score = 1393 bits (754), Expect = 0.0
Identities = 1361/1647 (83%), Gaps = 70/1647 (4%)
Strand=Plus/Plus
Query 80 TTCAAAACCACTCCCTACAATTTCTTGTATTATAG-TTTCAGTCTTGTATTTTTCATTCT 138
||||||||||| ||||| ||||||||||| ||| | ||| || | | ||| |||| |||
Sbjct 9 TTCAAAACCACGCCCTATAATTTCTTGTA-TATCGTTTTTAGCCCTATATATTTCTTTC- 66
Query 139 ATTGC-ATAACACCAACTTCTTCATCAGCCTC-CATCCAAGATCAATTCAT-AAACTGTG 195
|| | ||||||||| |||||||| | |||| | | |||||| | ||||| ||| |||
Sbjct 67 GTTACAATAACACCAGCTTCTTCA--A-CCTCTC-TACAAGATGATTTCATCAAA-TGTC 121
Query 196 T-CAAAAGAAACACACATGTTTC-TTTTCCACTCGAGAAAACGTTATTCACCCCTGCGAA 253
| || || ||||||| ||| | | |||||||||||| |||||||| ||||| |||| ||
Sbjct 122 TCCACAA-AAACACAAATG-TCCGTTTTCCACTCGACAAAACGTTCTTCACTCCTG-AAA 178
Query 254 -AAACGTC-TCTTTGTTCAACC-AAGTCCTTGAATCGACGGCTCAAAATCTCCAGTT-CT 309
|||| || || | ||| ||| ||||| ||||||||||||||||||||| | ||| |
Sbjct 179 GAAAC-TCTTCGATCTTC-ACCGAAGTCTTTGAATCGACGGCTCAAAATCAACGGTTAC- 235
Query 310 TGGCAAAATCCATGCCTAAACCGGGATTCATATTCAGACCGATTCACCAGTCTCAAGTCC 369
|| | || | ||||||||||||||||||||||| || |||||||| ||||||| || |
Sbjct 236 TGACCAAGGCAATGCCTAAACCGGGATTCATATTTAGGCCGATTCATGAGTCTCATGTTC 295
Query 370 AAGCTTCCATCATTTGTTCAAAGAAACTCGGAATTCATTTTCGTGTTAGAAGTGGCGGTC 429
||||||| |||| ||||| |||||||| ||||| ||||||||||||||||| |||||||
Sbjct 296 AAGCTTCTGTCATCTGTTCGAAGAAACTTGGAATACATTTTCGTGTTAGAAGCGGCGGTC 355
Query 430 ACGATTTCGAGGCCTTGTCTTATGTTTCACGGATTGAAAAACCGTTTATATTACTCGACC 489
|||||| ||||| | ||||||||||||||||||| ||||| |||||| ||||| ||||
Sbjct 356 ACGATTACGAGGGCGTGTCTTATGTTTCACGGATCGAAAACCCGTTTGTATTAATCGATT 415
Query 490 TGTCAAAATTGAAACAAATCAATGTTGATATTGAATCCAATAGTGCTTGGGTTCAACCTG 549
|||| ||||||| |||||||||| ||||||||||| ||||||||||||||||||| |||
Sbjct 416 TGTCGAAATTGAGACAAATCAATATTGATATTGAAGACAATAGTGCTTGGGTTCAAGCTG 475
Query 550 GTGCTACGCTTGGTGAGCTTTACTACAGAATTGCAGAGAAGAGCAAGATCCATGGATTTC 609
||||||| |||||||||||||||||||||||||||| ||||||||||| |||||| |||
Sbjct 476 GTGCTACTATTGGTGAGCTTTACTACAGAATTGCAGAAAAGAGCAAGATTCATGGA-TTC 534
Query 610 CC-GCGGGTTTGTGCACAAGTGTAGGCATAGGTGGGTATATGACAGGCGGTGGATACGGT 668
|| || ||| ||| | | ||| |||||||||||||| |||| |||||||||| |||||||
Sbjct 535 CCTGCAGGTGTGTACCCGAGTTTAGGCATAGGTGGGCATATAACAGGCGGTGCATACGGT 594
Query 669 ACCTTGATGAGGAAGTATGGTCTTGCGGGAGATAATGTTCTAGACGTAAAGATGGTTGAT 728
||||||||||||||||||||||||| | ||||||||||||||||| |||||| ||||||
Sbjct 595 TCCTTGATGAGGAAGTATGGTCTTGCTGCAGATAATGTTCTAGACGCAAAGATCGTTGAT 654
Query 729 GCAAATGGTAAATTACTCGACAGAGCCGCGATGGGTGAGGACCTATTTTGGGCGATTAGA 788
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 655 GCTAATGGTAAATTACTCGACAGAGCCGCGATGGGTGAGGATCTATTTTGGGCGATTAGA 714
Query 789 GGAGGCGGTGGAGCGAGTTTCGGGATAGTTCTAGCATGGAAGATCAAGCTTGTTCCTGTT 848
|| || |||||| |||||| |||||| || || ||||||||||||||||||||||||||
Sbjct 715 GGCGGTAGTGGAGGGAGTTTTGGGATAATTTTATCATGGAAGATCAAGCTTGTTCCTGTT 774
Query 849 CCT-AAGACTGTTACCGTCTTCACTGTCACCAAAACGTTAGAA-CAAGACGCAAGATTGA 906
||| || || | ||||||||||| |||||||| || || ||| ||||| ||||| || |
Sbjct 775 CCTGAA-ACCATAACCGTCTTCACGGTCACCAAGACATT-GAAGCAAGATGCAAGTTTCA 832
Query 907 AGACTATTTCTAAGTGGCAACAAATTTCATCCAAGATTATTGAAGAGATACA-CATCCGA 965
||| | ||| ||||||||||||| || | |||| || |||||||| | | | | |||
Sbjct 833 AGATTCTTTTTAAGTGGCAACAAGTTGCGGACAAGCTTGTTGAAGAGCT-CTTCTTACGA 891
Query 966 GTGGTACT-CAGAGCAGCTGGAAATGATGGAAACAAGACTGTGACAATGACCTACCTAGG 1024
||| | || || | || |||||| | | ||||||||| || | ||| ||||| ||||
Sbjct 892 GTGTT-CTTCACTGTAGTTGGAAACAAAGCAAACAAGACAGTTTCGATGGCCTACATAGG 950
Query 1025 TCAGTTTCTTGGCGAGAAAGGCACCTTGCTGAAGGTTATGGAGAAGGCTTTTCCAGAACT 1084
|||||||||||||||||||| |||||| || |||| |||||||||| ||||||||||||
Sbjct 951 TCAGTTTCTTGGCGAGAAAGAAACCTTGATGGAGGTAATGGAGAAGGATTTTCCAGAACT 1010
Query 1085 AGGGTTAACTCAAAAGGATTGTACT-GAAATGAGCTGGATTGAAGCCGCCCTTTTCCATG 1143
|||| |||| || |||||||||| | ||||||| |||||| || || ||| | | |
Sbjct 1011 AGGGCTAACGCAGAAGGATTGTA-TAGAAATGAACTGGATCAAATCCATTATTTAC-A-G 1067
Query 1144 GT--GGATTTCCAACAGG-T-TC-TCCT---ATTGAAATTTTGCTTCA-GCTCAAGTCGC 1194
| ||||| |||||| | | || |||| ||||| ||||||||||| || ||||| |
Sbjct 1068 CTCTGGATTCCCAACAAGCTCTCCTCCTCCCATTGAGATTTTGCTTCAAGCA-AAGTCTC 1126
Query 1195 CTCTAGGAAAAGATTACTTCAAAGC-AACGTCGGATTTCGTTAAAGAACCTATTCCTGTG 1253
| || ||||||| |||||| ||||| || |||||||||| |||||||| |||||||||
Sbjct 1127 CACTTGGAAAAGTTTACTTTAAAGCGAAA-TCGGATTTCGCTAAAGAACTTATTCCTGTT 1185
Query 1254 ATAGGGCTCAAAGGAATATTCAA-AAGATTGATTGAAGGAA-ACACAACATTTCTGAACT 1311
||||||||||||| || |||| ||| ||| |||||| || || || |||| ||| |
Sbjct 1186 TTAGGGCTCAAAGGGATGCTCAAGAAG-TTGCTTGAAG-AAGACGCAGCATTAGTGATTT 1243
Query 1312 GGACTCCTTACGGTGGTATGATGTCGAAAATCCCTGAATCTGCGATCCCATTTCCGCATA 1371
|||||||||||||||| | |||| |||||||||||||| | |||||| ||||||||||
Sbjct 1244 GGACTCCTTACGGTGGAAAGATGAATAAAATCCCTGAATCCGAGATCCCGTTTCCGCATA 1303
Query 1372 GAAACGGAACCCTCTTCAAGATTCTCTATTAC-GCGAACTGG-CTAGAGAATGACAAG-A 1428
||||||||||| ||||| ||||| || ||| | || |||| | ||| | | | || |
Sbjct 1304 GAAACGGAACCAACTTCATGATTCAATACTACAG-GAGCTGGTC-AGATA--G-CGAGGA 1358
Query 1429 CATCGAGTAGAAAA--ATCAACTGGATCAAAGAGATATACAATTACATGGCGCCTTATGT 1486
||||| | ||| ||||| ||||||| |||| | |||| ||||||| ||||||| ||
Sbjct 1359 -ATCGA--ACAAACGCATCAAATGGATCAGAGAGTTGTACAGTTACATGACGCCTTACGT 1415
Query 1487 CTCAAGCAATCCAAGACAAGCATATGTGAACTACAGAGATCTAGACTTCGGACAGAACAA 1546
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1416 TTCAAGCAATCCAAGACAAGCATATGTGAACTACAGAGATCTAGACCTGGGACAGAACAA 1475
Query 1547 GAACAACGCAAAGGT-TAACTTCATTGAAGCTAAAATCTGGGGACCTAAGTACTTCAAAG 1605
||||||| ||||| | ||||||||| |||||||||| |||||| |||||||||||||||
Sbjct 1476 GAACAACTCAAAG-TCTAACTTCATAGAAGCTAAAAGATGGGGAGCTAAGTACTTCAAAG 1534
Query 1606 GCAATTTTGACAGATTGGTGAAG-ATTAAAACCAAGGTTGATCCAGAGAACTTCTTCAGG 1664
|||||| | |||||||| ||| |||||||| |||||||||||||| |||||||| ||
Sbjct 1535 ACAATTTCAAAAGATTGGT-AAGGATTAAAACAAAGGTTGATCCAGATAACTTCTTTAGA 1593
Query 1665 CACGAGCAGAGTATCCCACCTATGCCC 1691
|||||||||||||||||| || |||||
Sbjct 1594 CACGAGCAGAGTATCCCAACTCTGCCC 1620
> Ahg494546 jgi|Araly1|494546|fgenesh2_kg.8__362__AT5G44400.1
Length=1680
Score = 1131 bits (612), Expect = 0.0
Identities = 1327/1662 (80%), Gaps = 90/1662 (5%)
Strand=Plus/Plus
Query 72 ATGGGAAATTCAAAACCACTCCCTAC-AATTTC-TTGTATTATAG-TTTCAGT-CTTGTA 127
|||||| |||||||||||||||| | | |||| || | || | | ||| || | | ||
Sbjct 2 ATGGGATTTTCAAAACCACTCCCT-CTATTTTCATT-TCTT-TCGATTTTGGTGC-TCTA 57
Query 128 TTTTTCATTCTATTGCATAACACCAACTTCTTCATCAGCCTCCATCCAAGATCAATTCAT 187
|||||||||||| |||||||||||||||||||| ||||||| | || |||||||| ||
Sbjct 58 TTTTTCATTCTACACCATAACACCAACTTCTTCATTAGCCTCCCTACAGGATCAATTTAT 117
Query 188 AAACTGTGTCAAAAGAAACACACATGTTT-CTTTTCCACTCGAGAAAACGTTATTCACCC 246
||||||||| |||||||||||||||||| | || ||||| |||||||| || || | |
Sbjct 118 CAACTGTGTCCAAAGAAACACACATGTTTAC-TTCCCACTTGAGAAAACATTCTTTGCTC 176
Query 247 CTGCGAAAAACGTCTCTTTGTTCAACCAAGTCCTTGAATCGACGGCTCAAAATCTCCAGT 306
|| ||||||| |||||| |||||| |||||| ||||||||||||||||| ||||||| ||
Sbjct 177 CTACGAAAAATGTCTCTATGTTCACCCAAGTTCTTGAATCGACGGCTCAGAATCTCCGGT 236
Query 307 TCTTGGCAA-AATCCATGCCTAAACCGGGATTCATATTCAGACCGATTCACCAGTCTCAA 365
|||| | || ||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 237 TCTT-GAAACAATCCATGCCTAAACCGGGATTCATATTCAGCCCGATTCATGAGTCTCAC 295
Query 366 GTCCAAGCTTCCATCATTTGTTCAAAGAAACTCGGAATTCATTTTCGTGTTAGAAGTGGC 425
|| ||||||||||| || ||||| ||||||||| |||| ||| | ||||| ||||| |||
Sbjct 296 GTACAAGCTTCCATTATCTGTTCCAAGAAACTCCGAATGCATCTACGTGTCAGAAGCGGC 355
Query 426 GGTCACGATTTCG-AGGCCTTGTCTTATGTTTCACGGATTGAAAAACCGTTTATATT-AC 483
|||||||| | || ||| |||||||||||| || | || || |||||||||||||| |
Sbjct 356 GGTCACGACTACGAAGG-CTTGTCTTATGTCTCTCAAATCGATAAACCGTTTATATTGA- 413
Query 484 TCGACCTGTCAAA-ATTGAAACAAATCAATGTTGATATTGAATCCAATAGTGCTTGGGTT 542
| || |||||||| | ||| |||| |||| || ||||| || ||| ||||||||||||
Sbjct 414 TGGATCTGTCAAAGA-TGAGACAAGTCAACATTAATATTCAAGACAACAGTGCTTGGGTT 472
Query 543 CAACCTGGTGCTAC-GCTTGGTGAGCTTTACTACAGAATTGCAGAGAAGAGC-AAGATCC 600
||| |||||||||| | ||||||| ||||| ||||| ||||||||||||||| ||| |||
Sbjct 473 CAATCTGGTGCTACAG-TTGGTGAACTTTATTACAGGATTGCAGAGAAGAGCAAAG-TCC 530
Query 601 ATGGATTTCCC-GCGGGTTTGTGCACAAG-TGTAGGCATAGGTGGGTATATGACAGGCGG 658
|||| ||||| ||||| |||||| | || | |||||||||| ||| | || ||||||||
Sbjct 531 ATGG-GTTCCCGGCGGGGTTGTGCTCGAGCT-TAGGCATAGGAGGGCACATAACAGGCGG 588
Query 659 TGGATACGGTACCTTGATGAGGAAGTATGGTCTTGCGG-G-AGATAATGTTCTAGACGTA 716
|| ||||||| || ||||||| || || |||| | ||| | ||| ||||||||||||| |
Sbjct 589 TGCATACGGTTCCATGATGAGAAAATACGGTC-T-CGGTGCAGACAATGTTCTAGACGCA 646
Query 717 AAGATGGTTGATGCAAATGGTAAATTACTCGACAGAGCCGCGATGGGTGAGGA-CCTATT 775
|| || |||||||| ||||||| |||||||||||| ||||||||||||||||| | |||
Sbjct 647 AAAATTGTTGATGCCAATGGTAGATTACTCGACAGGGCCGCGATGGGTGAGGATAC-ATT 705
Query 776 TTGGGCGATTAGAGGAGGCGGTGGAGCGAGTTTCGGGATAGTTCTAGCATGGAAGATCAA 835
|||||||||||||||||||| ||||| |||||| || ||| |||||||||||||||||||
Sbjct 706 TTGGGCGATTAGAGGAGGCGCTGGAGGGAGTTTTGGAATAATTCTAGCATGGAAGATCAA 765
Query 836 GCTTGTTCCTGTTCCTAAGACTGTTACCGTCTTCACTGTCACCAAAACGTTAGAACAAGA 895
|||||||||||||||| |||| || ||||||||||| ||||||||||||||| | |||||
Sbjct 766 GCTTGTTCCTGTTCCTCAGACCGTGACCGTCTTCACCGTCACCAAAACGTTACATCAAGA 825
Query 896 CGCAAG-ATTGAAGACTATTTCTAAGTGGCAACAAATTT-CATCCAAGATTATTGAAGAG 953
|| | | |||| ||| || ||||||||| | | || | |||| || ||||||||
Sbjct 826 CGTTGGCAAC-AAGATTATCTCAAAGTGGCAA-AGAGTTGCGGACAAGCTTGTTGAAGAG 883
Query 954 ATACACATCCGAGTGGTACT-CAGA-GCAGCTGGAAATGATGGAAACAAGACTGTGACAA 1011
|| ||| ||||| | || || | | ||||||||| | ||| ||||||||||||||||
Sbjct 884 CTATTTATCAGAGTGCT-CTTCA-ACGTAGCTGGAAACGGTGGGAACAAGACTGTGACAA 941
Query 1012 TGACC-TACCTAGG-TCAGTTTCTTGGCGAGAAAGGCACCTTGCTGAAGGTTATGGAGAA 1069
| | ||| | | || ||||||||||| ||||||||| ||| |||| |||||| ||||
Sbjct 942 C-ATCGTACA-ACGCTCTGTTTCTTGGCGGGAAAGGCACATTGATGAAAGTTATGAAGAA 999
Query 1070 G-GCTTTTCCAGAACTAGGGTTAACTCA-AAAGGATTGTA-CTGAAATGAGCTGGATTGA 1126
| | ||| || || |||||| |||| | |||| |||||| | |||||||||||| ||||
Sbjct 1000 GAG-TTTCCCCGAGCTAGGGCTAACACTTAAAG-ATTGTATC-GAAATGAGCTGGCTTGA 1056
Query 1127 AGCCGCCCTT-TTCCATGG-TGGATTTCCAA-C-AGGTTC-TCCTATTGAAATTTTGCTT 1181
| || || || ||| |||||| || | | | || | ||| || ||||||||
Sbjct 1057 ATCCAT--TTCTTACATTTCTGGATTCCCCAGCCACACTCCTACTAGTG---TTTTGCTT 1111
Query 1182 CAGCTCAAGTCGCCTCTAGGAAAAGATTA-CTTCAAAGC-AACGTCGGATTTCGTTAAAG 1239
||| ||||||||| | ||| ||| | ||||||||| || ||||||||||| |||
Sbjct 1112 CAGGGGAAGTCGCCTTTCCCAAA-GATCAGCTTCAAAGCCAAA-TCGGATTTCGTGAAA- 1168
Query 1240 AACCT-ATTCCTGTGATA-GGGCT-CAAAGGAATATTCAA-AAGATTGATTGAAGGAA-A 1294
| || ||||| | || ||||| ||| ||| | ||||| ||| | || ||| || |
Sbjct 1169 ACCCCGATTCCCGA-ATCCGGGCTTCAAGGGA-TCTTCAAGAAGCTAC-TTAAAG-AAGA 1224
Query 1295 CACAACATTTCTGA-ACTGGACTCCTTACGGTGGTATGATGTCGAAAATCCCTGAATCTG 1353
| |||| ||| | |||| ||||||||| || |||||| |||||||||| |||||
Sbjct 1225 TATTCCATTGATGATA-TGGAATCCTTACGGAGGAATGATGGCGAAAATCCCCGAATCA- 1282
Query 1354 CGA-TCCCATTTCCGCATAGAAACGGAACCCTCTTCAAGATTCTCTATTACGCGAAC--- 1409
| | |||| |||||||||||||| ||| ||||||||| | | || | |||| |||
Sbjct 1283 CAAATCCCTTTTCCGCATAGAAAAGGAGTCCTCTTCAA-AGT-TC-AGTACGT-AACAAG 1338
Query 1410 T-GGCTAGAGAATGACAAGACATCGAGTAGAAAAATCAACTGGATCAAAGAGATATACAA 1468
| ||||||| | ||||||| | |||| ||| | ||||||||||||| ||| | |||||
Sbjct 1339 TTGGCTAGACAGCGACAAGAGACCGAGCAGACACATCAACTGGATCAGAGATCTCTACAA 1398
Query 1469 TTACATGGCGCCTTATGTCTCAAGCAATCCAAGACAAGCATATGTGAACTACAGAGATCT 1528
||||||| |||||||||||||||| |||||| || |||| |||||||||||| | |||||
Sbjct 1399 TTACATGACGCCTTATGTCTCAAGTAATCCACGAGAAGCTTATGTGAACTACCGCGATCT 1458
Query 1529 AGACTTCGGACAGAACA-AGAACAACGC-AAAGGTTAACTTCATTGAAGCTAAAATCTGG 1586
|||| ||||| |||||| | || | || ||| | | ||| ||||| || |||||
Sbjct 1459 AGACCTCGGAAAGAACACAAAAGA-CGTGAAAACATG-CATCAAACAAGCTCAAGTCTGG 1516
Query 1587 GGACCTAAGTACTTCAAAGGCAATTTTGACAGATTGGTGAAGATTAAAACCAAGGTTGAT 1646
||| |||| ||||||||| |||||| |||||||| ||||||||||| | |||||||||
Sbjct 1517 GGAGCTAACTACTTCAAAAACAATTTCAACAGATTGATGAAGATTAAATCAAAGGTTGAT 1576
Query 1647 CCAGAGAACTTCTTCAGGCACGAGCAGAGTATCCCACCTATG 1688
||||||||||||||||| ||||||||||| || |||||||||
Sbjct 1577 CCAGAGAACTTCTTCAGACACGAGCAGAGCATTCCACCTATG 1618
> Ahg356638 jgi|Araly1|356638|fgenesh1_pg.C_scaffold_8000425
Length=1065
Score = 536 bits (290), Expect = 2e-151
Identities = 360/394 (91%), Gaps = 4/394 (1%)
Strand=Plus/Plus
Query 1300 CATTTCTGAACTGGACTCCTTACGGTGGTATGATGTCGAAAATCCCTGAATCTGCGATCC 1359
|||||||||| |||||||||||||||||||||||| ||||||| |||||||||| |||||
Sbjct 662 CATTTCTGAATTGGACTCCTTACGGTGGTATGATGGCGAAAATTCCTGAATCTGAGATCC 721
Query 1360 CATTTCCGCATAGAAACGGAACCCTCTTCAAGATTCTCTATTACGCGAACTGGCTAGAGA 1419
||||||||||| ||||||||||||||||||||||||| ||| | ||||||||| |||||
Sbjct 722 CATTTCCGCATCGAAACGGAACCCTCTTCAAGATTCTTTATCAAACGAACTGGCAAGAGA 781
Query 1420 ATGACAAGACATC-GAGTAGAAAAATCAACTGGATCAAAGAGATATACAATTACATGGCG 1478
||||||||| | | ||||||| | |||||||||||||||||||| |||| ||||||||||
Sbjct 782 ATGACAAGAGA-CAGAGTAGACACATCAACTGGATCAAAGAGATGTACAGTTACATGGCG 840
Query 1479 CCTTATGTCTCAAGCAATCCAAGACAAGCATATGTGAACTACAGAGATCTAGACTTCGGA 1538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CCTTATGTCTCAAGCAATCCAAGACAAGCATATGTGAACTACAGAGATCTAGACTTCGGA 900
Query 1539 CAGAACAAGAACAACGCAAAGGTTAACTTCATTGAAGCTAAAATCTGGGGACCTAAGTAC 1598
||||||||||||||| |||||||||||||||| |||||||||||||||||| |||| ||
Sbjct 901 CAGAACAAGAACAACTCAAAGGTTAACTTCATAGAAGCTAAAATCTGGGGAGCTAATTAT 960
Query 1599 TTCAAAGGCAATTTTGACAGATTGGTGAAGA-TTAAAACCAAGGTTGATCCAGAGAACTT 1657
||||||| |||||| ||||| |||||| || ||||||| |||||||||||||| |||||
Sbjct 961 TTCAAAGACAATTTCAACAGACTGGTGA-GAATTAAAACAAAGGTTGATCCAGATAACTT 1019
Query 1658 CTTCAGGCACGAGCAGAGTATCCCACCTATGCCC 1691
||| || |||||||||||||||||| || |||||
Sbjct 1020 CTTTAGACACGAGCAGAGTATCCCAACTCTGCCC 1053
Score = 483 bits (261), Expect = 3e-135
Identities = 350/392 (89%), Gaps = 10/392 (3%)
Strand=Plus/Plus
Query 833 CAAGCTTGTTCCTGTTCCT-AAGACTGTTACCGTCTTCACTGTCACCAAAACGTTAGAAC 891
||||||||||||||||||| || || | |||||||||||||| |||||||| |||||||
Sbjct 261 CAAGCTTGTTCCTGTTCCTGAA-ACCCTAACCGTCTTCACTGTTACCAAAACATTAGAAC 319
Query 892 AAGACGCAAGATTGAAGACTATTTCTAAGTGGCAACAAATTTCATCCAAGATTATTGAAG 951
|||||||||||||||||| ||||||||||||||||| |||| |||||||| |||||||||
Sbjct 320 AAGACGCAAGATTGAAGATTATTTCTAAGTGGCAACGAATTGCATCCAAGCTTATTGAAG 379
Query 952 AGATACACATCCGAGTGGTACTCAGAG-CAGCTGGAAATGATGGAAACAAGACTGTGACA 1010
|| ||||||||||||||| |||||||| || ||||||| | ||||||||||||||||||
Sbjct 380 AGCTACACATCCGAGTGGAACTCAGAGCCA-TTGGAAATAACGGAAACAAGACTGTGACA 438
Query 1011 ATGACCTACCTAGGTCAGTTTCTTGGCGAGAAAGGCACCTTGCTGAAGGTTATGGAGAAG 1070
||| ||||| |||||||||||||||| ||||||||| |||| ||||||||||| |||||
Sbjct 439 ATGTCCTACAAAGGTCAGTTTCTTGGCAAGAAAGGCATCTTGATGAAGGTTATGAAGAAG 498
Query 1071 GCTTTTCCAGAACTAGGGTTAACTCAA-AAGGATTGTACT-GAAATGAGCTGGATTGAAG 1128
||||||||||| |||||||| |||||| || ||||||| | |||||||| |||||||||
Sbjct 499 GCTTTTCCAGAGCTAGGGTTGACTCAAGAA-GATTGTA-TCGAAATGAGTTGGATTGAAT 556
Query 1129 CCGCCCTTTTCCATGGTGGATTTCCAACAGGTTCTCCTATTGAAATTTTGCTTCA-GCTC 1187
|| |||||||| ||||||||||||||||||||||||||||||| |||||||||| | ||
Sbjct 557 CCACCCTTTTCGGTGGTGGATTTCCAACAGGTTCTCCTATTGAAGTTTTGCTTCAAG-TC 615
Query 1188 AAGTCGCCTCTAGGAAAAGATTACTTCAAAGC 1219
||||| ||| ||||||||| ||||||||||||
Sbjct 616 AAGTCTCCTTTAGGAAAAGGTTACTTCAAAGC 647
Score = 383 bits (207), Expect = 3e-105
Identities = 241/258 (93%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 321 ATGCCTAAACCGGGATTCATATTCAGACCGATTCACCAGTCTCAAGTCCAAGCTTCCATC 380
||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||
Sbjct 1 ATGCCTAAACCGGGATTCATATTTAGGCCGATTCACGAGTCTCAAGTCCAAGCTTCCATC 60
Query 381 ATTTGTTCAAAGAAACTCGGAATTCATTTTCGTGTTAGAAGTGGCGGTCACGATTTCGAG 440
|| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 61 ATCTGTTCCAAGAAACTCGGTATTCATTTTCGTGTTAGAAGTGGCGGTCACGATTTTGAG 120
Query 441 GCCTTGTCTTATGTTTCACGGATTGAAAAACCGTTTATATTACTCGACCTGTCAAAATTG 500
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 121 GCCTTGTCTTATGTTTCACGGATTGAAAAACCGTTTATATTACTCGATATGTCGAAATTG 180
Query 501 AAACAAATCAATGTTGATATTGAATCCAATAGTGCTTGGGTTCAACCTGGTGCTACGCTT 560
| |||||||| |||||||||| || ||||||||||||||||||||||||||| ||||||
Sbjct 181 AGACAAATCACTGTTGATATTAAAGACAATAGTGCTTGGGTTCAACCTGGTGCCACGCTT 240
Query 561 GGTGAGCTTTACTACAGA 578
|| |||||||||||||||
Sbjct 241 GGCGAGCTTTACTACAGA 258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69400426390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5