BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44390.1
Length=1860
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330958 jgi|Araly1|330958|fgenesh1_pm.C_scaffold_8000301 2231 0.0
Ahg948681 jgi|Araly1|948681|scaffold_800568.1 1290 0.0
Ahg356638 jgi|Araly1|356638|fgenesh1_pg.C_scaffold_8000425 479 3e-134
> Ahg330958 jgi|Araly1|330958|fgenesh1_pm.C_scaffold_8000301
Length=1626
Score = 2231 bits (1208), Expect = 0.0
Identities = 1493/1630 (92%), Gaps = 21/1630 (1%)
Strand=Plus/Plus
Query 107 TTCAAAACCACTCCCTACAATTTCTTGTATTTCAGTTTTT-GCTCTATATTTTTCATTC- 164
||||||||||| ||||| |||||||||||| || |||||| || |||||| |||| |||
Sbjct 9 TTCAAAACCACGCCCTATAATTTCTTGTATATC-GTTTTTAGCCCTATATATTTCTTTCG 67
Query 165 TACACAATAACACTAACTTCTTCAACCTCCCTACAAGATGATTTCATCAAATGTCTTTAC 224
| |||||||||| | ||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 68 T-TACAATAACACCAGCTTCTTCAACCTCTCTACAAGATGATTTCATCAAATGTCTCCAC 126
Query 225 CGAAACACAAATGTCCGTTTTACACTCGACAAAACGTTCTTCACTCCTGAAAGAAACGCT 284
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 127 AAAAACACAAATGTCCGTTTTCCACTCGACAAAACGTTCTTCACTCCTGAAAGAAACTCT 186
Query 285 TCCATCTTCACAGAAGTTC-TTGAATCGACGGCTCAGAATCAA-AGATACTTGACCAAGA 342
|| |||||||| |||| || |||||||||||||||| |||||| | ||| ||||||||
Sbjct 187 TCGATCTTCACCGAAG-TCTTTGAATCGACGGCTCAAAATCAACGGTTAC-TGACCAAGG 244
Query 343 CAATGCCTAAACCGGGTTTCATATTTAAACCGGTTCACGAATCTCACGTCCAAGCTTCCG 402
|||||||||||||||| |||||||||| ||| |||| || ||||| || |||||||| |
Sbjct 245 CAATGCCTAAACCGGGATTCATATTTAGGCCGATTCATGAGTCTCATGTTCAAGCTTCTG 304
Query 403 TCATCTGTTCCAAGAAACTT-GAGATACATTTTCGTGTCAGAAGCGGCGGTCATGATTAC 461
|||||||||| ||||||||| || |||||||||||||| |||||||||||||| ||||||
Sbjct 305 TCATCTGTTCGAAGAAACTTGGA-ATACATTTTCGTGTTAGAAGCGGCGGTCACGATTAC 363
Query 462 GAGGGCGTGTCTTATGTTTCACAGATCGAAAAACCTTTTGTATTGATCGATTTGTCGAAA 521
|||||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||
Sbjct 364 GAGGGCGTGTCTTATGTTTCACGGATCGAAAACCCGTTTGTATTAATCGATTTGTCGAAA 423
Query 522 TTGAGACAGATCAATGTTGATATT-AAGGACACCAGTGCTTGGGTTGAAGCTGGTGCTAC 580
|||||||| |||||| |||||||| || |||| |||||||||||| |||||||||||||
Sbjct 424 TTGAGACAAATCAATATTGATATTGAA-GACAATAGTGCTTGGGTTCAAGCTGGTGCTAC 482
Query 581 CGTTGGTGAGCTTTACTACAGAATTGCAGAGAAGAGCAAGTTTCATGGATTCCCTGCAGG 640
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 483 TATTGGTGAGCTTTACTACAGAATTGCAGAAAAGAGCAAGATTCATGGATTCCCTGCAGG 542
Query 641 TGTTTACCCGAGCTTAGGCATCGGTGGGCATATAACAGGCGGTGCATACGGTTCCTTGAT 700
||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 543 TGTGTACCCGAGTTTAGGCATAGGTGGGCATATAACAGGCGGTGCATACGGTTCCTTGAT 602
Query 701 GAGGAAGTATGGTCTTGCTGCAGATAATGTTCTAGACGCAAAGATCGTTGATGCTAACGG 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 603 GAGGAAGTATGGTCTTGCTGCAGATAATGTTCTAGACGCAAAGATCGTTGATGCTAATGG 662
Query 761 TAAATTACTCGATAGAGCCTCGATGGGCGAGGATCTGTTTTGGGCAATTAGAGGAGGCAG 820
|||||||||||| |||||| ||||||| |||||||| |||||||| |||||||| || ||
Sbjct 663 TAAATTACTCGACAGAGCCGCGATGGGTGAGGATCTATTTTGGGCGATTAGAGGCGGTAG 722
Query 821 TGGAGGGAGTTTTGGGATAATTTTGTCATGGAAAATCAAGCTTGTTCCTGTTCCTGAAAC 880
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 723 TGGAGGGAGTTTTGGGATAATTTTATCATGGAAGATCAAGCTTGTTCCTGTTCCTGAAAC 782
Query 881 CCTAACCGTCTTCACGGTCACCAAAACATTCGA-GCAAGATAG-AAGTTTCAAGATTCTT 938
| |||||||||||||||||||||| ||||| || ||||||| | ||||||||||||||||
Sbjct 783 CATAACCGTCTTCACGGTCACCAAGACATT-GAAGCAAGAT-GCAAGTTTCAAGATTCTT 840
Query 939 TCAAAGTGGCAAGAAATTGCGGACAATCTTGTTGATGAGCTCTTCTTACGAGTGTTCTTC 998
| ||||||||| || |||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 841 TTTAAGTGGCAACAAGTTGCGGACAAGCTTGTTGAAGAGCTCTTCTTACGAGTGTTCTTC 900
Query 999 ACTGTA-TCTGGAAACAAAGCAAACAAGACAGTGACGATGGCCTACATAGGTCAGTTTCT 1057
|||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 901 ACTGTAGT-TGGAAACAAAGCAAACAAGACAGTTTCGATGGCCTACATAGGTCAGTTTCT 959
Query 1058 TGGCGAGAAAGGCACCTTGATGGAGGTAATGAAGAAGGATTTTCCAGAACTTGGGCTAAC 1117
||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 960 TGGCGAGAAAGAAACCTTGATGGAGGTAATGGAGAAGGATTTTCCAGAACTAGGGCTAAC 1019
Query 1118 TCAGAAGGATTGTATAGAAATGAGTTGGATCGATTCCATTATTTACAACTCTGGATTCCC 1177
|||||||||||||||||||||| |||||| | ||||||||||||| ||||||||||||
Sbjct 1020 GCAGAAGGATTGTATAGAAATGAACTGGATCAAATCCATTATTTACAGCTCTGGATTCCC 1079
Query 1178 AACAAACCCTCCTCCTCCTATTGAGATTCTGCTTCAAGCAAAGTCTCCAATCGGAAAAGT 1237
||||| | |||||||||| ||||||||| |||||||||||||||||||| | ||||||||
Sbjct 1080 AACAAGCTCTCCTCCTCCCATTGAGATTTTGCTTCAAGCAAAGTCTCCACTTGGAAAAGT 1139
Query 1238 TTACTTCAAAGGGAAATCGGATTTCGCTAAAAAACCTATTCCTGTTTTAGGGCTCGAAGG 1297
|||||| |||| ||||||||||||||||||| ||| ||||||||||||||||||| ||||
Sbjct 1140 TTACTTTAAAGCGAAATCGGATTTCGCTAAAGAACTTATTCCTGTTTTAGGGCTCAAAGG 1199
Query 1298 GATGTTCAAGAAGTTGCTTGAAGAAGACGCAGCGTTAGTAATTTGGACTCCTTACGGTGG 1357
|||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1200 GATGCTCAAGAAGTTGCTTGAAGAAGACGCAGCATTAGTGATTTGGACTCCTTACGGTGG 1259
Query 1358 AAAGATGGATAAAATCCCTGAATCTGAGATCCCATTTCCGCATAGAAACGGAACCAACTT 1417
||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1260 AAAGATGAATAAAATCCCTGAATCCGAGATCCCGTTTCCGCATAGAAACGGAACCAACTT 1319
Query 1418 CATGATTCAATATTACAGGAGCTGGTCAGATAGTGAGAAAAGACCAAACAGACGCACCAA 1477
|||||||||||| |||||||||||||||||||| ||| || | || || ||||| |||
Sbjct 1320 CATGATTCAATACTACAGGAGCTGGTCAGATAGCGAGGAAT--CGAA-CAAACGCATCAA 1376
Query 1478 ATGGATCAGAGAGTTGTACGGATACATGACGCCTTACGTCTCAAGCAATCCAAGACAAGC 1537
||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||
Sbjct 1377 ATGGATCAGAGAGTTGTACAGTTACATGACGCCTTACGTTTCAAGCAATCCAAGACAAGC 1436
Query 1538 ATATGTGAACTACAGAGATCTAGACCTGGGACAGAACAAGGACAACTCAAAGTCTAACTT 1597
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1437 ATATGTGAACTACAGAGATCTAGACCTGGGACAGAACAAGAACAACTCAAAGTCTAACTT 1496
Query 1598 CATAGAAGCTAAAATATGGGGAGCTAATTATTTCAAAGACAATTTCAACAGATTGGTGAG 1657
|||||||||||||| |||||||||||| || ||||||||||||||||| |||||||| ||
Sbjct 1497 CATAGAAGCTAAAAGATGGGGAGCTAAGTACTTCAAAGACAATTTCAAAAGATTGGTAAG 1556
Query 1658 GATTAAATCAAAGGTTGATCCAGATAACTTCTTCAGACACGAGCAGAGTATCCCAACTCT 1717
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1557 GATTAAAACAAAGGTTGATCCAGATAACTTCTTTAGACACGAGCAGAGTATCCCAACTCT 1616
Query 1718 GCCCGTATGA 1727
|||||| |||
Sbjct 1617 GCCCGTTTGA 1626
> Ahg948681 jgi|Araly1|948681|scaffold_800568.1
Length=1666
Score = 1290 bits (698), Expect = 0.0
Identities = 1379/1699 (81%), Gaps = 81/1699 (5%)
Strand=Plus/Plus
Query 84 ATATTCGCTGCTAGGATGGGAAATTCAAAACCACTCCCTACAATTTCTTGTATTTCAGTT 143
||||||||||| |||||||| | ||||||||||| |||||||||||||||||||| |||
Sbjct 6 ATATTCGCTGCAAGGATGGGGATTTCAAAACCACACCCTACAATTTCTTGTATTT-TGTT 64
Query 144 TTT-GCTCTATATTTTTCATTCTA-CACAATAACACTAACTTCTTCA--A-CCTCCCTAC 198
||| | | | ||| | ||||| || | ||||||| |||||||||| | ||||||| |
Sbjct 65 TTTAGTTTTTTATCTCTCATTATATTGC-ATAACACCAACTTCTTCATCAGCCTCCCTCC 123
Query 199 AAGATGATTTCATCAAA-TGTCTTTACCGAAACACAAATG-TCCGTTTTACACTCGACAA 256
||||| | ||||| ||| ||| | | ||||||| ||| | | |||| ||||||| |
Sbjct 124 AAGATCAATTCAT-AAACTGTGTCAAAAGAAACACGCATGTTTC-TTTTCCACTCGAGAC 181
Query 257 AACGTTCTTCACTCCTG-AAAGAAACGCT-TCCATCTTCA-CAGAAGTTCTTGAATCGAC 313
||||| || |||||| ||| ||||| | || || |||| | |||| |||||||| ||
Sbjct 182 TACGTTATTTGCTCCTGCAAA-AAACG-TCTCTATGTTCAGC-CAAGTCCTTGAATCAAC 238
Query 314 GGCTCAGAATC-AAAGATACTTGACCAAGA-CAATGCCTAAACCGGGTTTCATATTTAAA 371
|||||| |||| || | |||| ||| | | ||||||||||||| ||||||||||
Sbjct 239 GGCTCAAAATCTCCAG-TTCTTG-GCAAAATCCTTGCCTAAACCGGGATTCATATTTAGG 296
Query 372 CCGGTTCACGAATCTCACGTCCAAGCTTCCGTCATCTGTTCCAAGAAACT-TGAGATACA 430
|| ||||||| ||||| ||||||||||| |||||||||| |||||||| || || ||
Sbjct 297 CCAATTCACGAGTCTCAAGTCCAAGCTTCTATCATCTGTTCTAAGAAACTCGGA-ATTCA 355
Query 431 TTTTCGTGTCAGAAGCGGCGGTCATGATTACGAGGGCGTGTCTTATGTTTCACAGATCGA 490
||||||||| ||||| |||||||| |||| ||||| | |||||||||| |||| ||| ||
Sbjct 356 TTTTCGTGTTAGAAGTGGCGGTCACGATTTCGAGGCCTTGTCTTATGTCTCACGGATTGA 415
Query 491 AAAACCTTTTGTATTGATCGATTTGTCGAAATTGAGAC-AGATCAATGTTGATATT-AAG 548
|||||| ||| |||| |||||| ||||||||||||||| || || ||||||||||| ||
Sbjct 416 AAAACCGTTTATATTAATCGATCTGTCGAAATTGAGACAAG-TCGATGTTGATATTGAA- 473
Query 549 GA-CACCAGTGCTTGGGTTGAAGCTGGTGCTACCG-TTGGTGAGCTTTACTACAGAATTG 606
| || |||||||||||| || ||||||||| || ||||||||||||||||||||||||
Sbjct 474 -ACCAATAGTGCTTGGGTTCAACCTGGTGCTA-CGCTTGGTGAGCTTTACTACAGAATTG 531
Query 607 CAGAGAAGAGCAA-GTTTCATGGATT-CCCTGCAGGTGT-T-TACCCGAGCTTAGGCATC 662
||||||||||||| || |||||||| ||| || ||| | | ||| |||| |||||||
Sbjct 532 CAGAGAAGAGCAAAGTC-CATGGATTTCCC-GCGGGTTTGTGTAC--GAGCGTAGGCATA 587
Query 663 GGTGGGCATATAACAGGCGGTGCATACGGTTCCTTGATGAGGAAGTATGGTCTTGCTGCA 722
|||||| |||| ||||| |||| ||||||||||||||||||||||||||||||||| | |
Sbjct 588 GGTGGGTATATGACAGGGGGTGGATACGGTTCCTTGATGAGGAAGTATGGTCTTGCGGGA 647
Query 723 GATAATGTTCTAGACGCAAAGATCGTTGATGCTAACGGTAAATTACTCGATAGAGCCTCG 782
|||||||||||||||| |||||| |||||||| || |||||||||||||| ||| || ||
Sbjct 648 GATAATGTTCTAGACGTAAAGATGGTTGATGCAAATGGTAAATTACTCGACAGAACCGCG 707
Query 783 ATGGGCGAGGATCTGTTTTGGGCAATTAGAGGAGGCAGTGGAGGGAGTTTTGGGATAATT 842
||||| ||||| || |||||||| ||||||||||| |||||| ||||||||||||| ||
Sbjct 708 ATGGGTGAGGACCTATTTTGGGCGCTTAGAGGAGGCGGTGGAGCGAGTTTTGGGATAGTT 767
Query 843 TT-GTCATGGAAAATCAAGCTTGTTCCTGTTCCTGAAACCCTAACCGTCTTCACGGTCAC 901
| | ||||||| ||||||||||||||||||||||| ||| ||||| ||||||| || ||
Sbjct 768 CTCG-CATGGAAGATCAAGCTTGTTCCTGTTCCTGAGACCGTAACCATCTTCACCGTTAC 826
Query 902 CAAAACATTCGAGCAAGATAG-AAGTTTCAAGATTCTTTCAAAGTGGCAAGAAATTGCGG 960
|||||| || | ||||| | ||| || |||||| |||| ||||||||| |||||||
Sbjct 827 CAAAACGTTAAAACAAGAC-GCAAGATTGAAGATTATTTCTAAGTGGCAACAAATTGCAT 885
Query 961 ACAATCTTGTTGATGAGCT-CTTCTTACGAGTGTT-CTTCACTGTA-TCTGGAAACAAAG 1017
||| ||||| || ||||| | | | ||| || | || || | | |||||| || |
Sbjct 886 CCAAGCTTGTCGAAGAGCTACA-CATCCGATTGGTACT-CAGAGCCGT-TGGAAATAATG 942
Query 1018 CAAACAAGAC-AGTGACGATGGCCTACATAGGTCAGTTTCTTGGCGAGAAAGGCACCTTG 1076
||||||||| | | || ||| |||| ||||||||||||||||||||||||||||||||
Sbjct 943 GAAACAAGACTATT-ACAATGTCCTATTTAGGTCAGTTTCTTGGCGAGAAAGGCACCTTG 1001
Query 1077 ATGGAGGTAATGAAGAAGGATTTTCCAGAACTTGGGCTAACTCAGAAGGATTGTATAGAA 1136
||| |||| ||| ||||||||||||||||||| ||| ||||||| |||||||||| |||
Sbjct 1002 ATGAAGGTTATGGAGAAGGATTTTCCAGAACTAGGGTTAACTCAAAAGGATTGTACCGAA 1061
Query 1137 ATGAGTTGGATCGATTCCATTATTTACAACTC-TGGATTCCCAACAAACCCTCCTCCTCC 1195
||||| ||||| || |||| ||| | | | |||||| ||||| | || |||
Sbjct 1062 ATGAGCTGGATTGAATCCACCCTTTTCCA-TGGTGGATTTCCAACTGG---T--TC-TCC 1114
Query 1196 TATTGAGATTCTGCTTCAA-GCAAAGTCTCCAATCGGAAAAGTTTACTTCAAAGGGAAA- 1253
|||||| ||| |||||||| |||| ||| || | ||||||| ||||||||||| ||
Sbjct 1115 TATTGAAATTTTGCTTCAACGCAA-GTCGCCTTTAGGAAAAGATTACTTCAAAGC-AACG 1172
Query 1254 TCGGATTTCGCTAAAAAACCTATTCCTGTTTTAGGGCTCGAAGGGATGTTCAAGAAG-TT 1312
|| ||||||| |||| ||||||||||||||||||||||| |||| || ||||| ||| ||
Sbjct 1173 TCAGATTTCGTTAAAGAACCTATTCCTGTTTTAGGGCTCAAAGGAATTTTCAA-AAGATT 1231
Query 1313 GCTTGAAG-AA-GACGCAGCGTTAGT-AATTTGGACTCCTTACGGTGGAAAGATGGATAA 1369
| |||||| || || || || | || | ||||||| |||||||| | |||| ||
Sbjct 1232 GATTGAAGGAAAGAT--AGAATTTCTCAACT-GGACTCCCTACGGTGGTATGATGTCGAA 1288
Query 1370 AATCCCTGAATCTGAGATCCCATTTCCGCATAGAAACGGAACCAACTTCATGATTCAATA 1429
|||| ||||||| | |||||||||||| || |||||||||||| ||||| ||||| ||
Sbjct 1289 AATCTCTGAATCCGCGATCCCATTTCCTCACAGAAACGGAACCCTCTTCAAGATTCTCTA 1348
Query 1430 TTACAG-GAGCTGG-TCAGATAGTGAGAAAAGACCAA--AC-AGACGCACCAAATGGATC 1484
|||| | || |||| | ||| | ||| || | | | | | ||| | ||||||||||
Sbjct 1349 TTAC-GCGAACTGGCT-AGAGAATGACAAGACATCGATGAGTAGAAAAATCAAATGGATC 1406
Query 1485 AGAGAGTTGTACGGATACATGACGCCTTACGTCTCAAGCAATCCAAGACAAGCATATGTG 1544
| |||| | ||| | |||||| ||||||| |||||||||||||||||| |||||||||||
Sbjct 1407 AAAGAGATATACAGTTACATGGCGCCTTATGTCTCAAGCAATCCAAGAGAAGCATATGTG 1466
Query 1545 AACTACAGAGATCTAGACCTGGGACAGAACAAGGACAACTCAAAGTCTAACTTCATAGAA 1604
|||||||||||||||||| | ||||||||| || |||||||||||| ||||||||| |||
Sbjct 1467 AACTACAGAGATCTAGACTTCGGACAGAACGAGAACAACTCAAAGTTTAACTTCATCGAA 1526
Query 1605 GCTAAAATATGGGGAGCTAATTATTTCAAAGACAATTTCAACAGATTGGTGAGGATTAAA 1664
|||||||| ||||||||||| || |||||||||||||||||||||||||||| |||||||
Sbjct 1527 GCTAAAATCTGGGGAGCTAAGTACTTCAAAGACAATTTCAACAGATTGGTGAAGATTAAA 1586
Query 1665 TCAAAGGTTGATCCAGA-TAACTTCTTCAGACACGAGCAGAGTATCCCAACTCTGCCC-G 1722
||||||||||||| || |||||||||||| |||||||||||||||||| || ||||| |
Sbjct 1587 ACAAAGGTTGATCC-GAATAACTTCTTCAGGCACGAGCAGAGTATCCCACCTATGCCCTG 1645
Query 1723 TATGAAGCTAAGCTCATGA 1741
| ||||||| | ||||||
Sbjct 1646 AACGAAGCTAGGTTCATGA 1664
> Ahg356638 jgi|Araly1|356638|fgenesh1_pg.C_scaffold_8000425
Length=1065
Score = 479 bits (259), Expect = 3e-134
Identities = 368/420 (88%), Gaps = 9/420 (2%)
Strand=Plus/Plus
Query 1318 AAGAAGACGCAGCGTTAGT-AATTTGGACTCCTTACGGTGGAAAGATGGATAAAATCCCT 1376
||| ||||||| | || | || |||||||||||||||||| | ||||| ||||| |||
Sbjct 651 AAG-AGACGCACCATTTCTGAA-TTGGACTCCTTACGGTGGTATGATGGCGAAAATTCCT 708
Query 1377 GAATCTGAGATCCCATTTCCGCATAGAAACGGAACCAACTTCATGATTCAATATTACAGG 1436
|||||||||||||||||||||||| ||||||||||| ||||| ||||| ||| | | |
Sbjct 709 GAATCTGAGATCCCATTTCCGCATCGAAACGGAACCCTCTTCAAGATTCTTTATCAAACG 768
Query 1437 AGCTGGTC-AGATAGTGAGAAAAGACCA-AACAGACGCACCAAATGGATCAGAGAGTTGT 1494
| |||| | ||| | ||| || ||| || | |||| || ||| ||||||| |||| |||
Sbjct 769 AACTGG-CAAGAGAATGACAAGAGA-CAGAGTAGACACATCAACTGGATCAAAGAGATGT 826
Query 1495 ACGGATACATGACGCCTTACGTCTCAAGCAATCCAAGACAAGCATATGTGAACTACAGAG 1554
|| | |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 827 ACAGTTACATGGCGCCTTATGTCTCAAGCAATCCAAGACAAGCATATGTGAACTACAGAG 886
Query 1555 ATCTAGACCTGGGACAGAACAAGGACAACTCAAA-GTCTAACTTCATAGAAGCTAAAATA 1613
|||||||| | |||||||||||| |||||||||| || |||||||||||||||||||||
Sbjct 887 ATCTAGACTTCGGACAGAACAAGAACAACTCAAAGGT-TAACTTCATAGAAGCTAAAATC 945
Query 1614 TGGGGAGCTAATTATTTCAAAGACAATTTCAACAGATTGGTGAGGATTAAATCAAAGGTT 1673
|||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||
Sbjct 946 TGGGGAGCTAATTATTTCAAAGACAATTTCAACAGACTGGTGAGAATTAAAACAAAGGTT 1005
Query 1674 GATCCAGATAACTTCTTCAGACACGAGCAGAGTATCCCAACTCTGCCCGTATGAAGCTAA 1733
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1006 GATCCAGATAACTTCTTTAGACACGAGCAGAGTATCCCAACTCTGCCCGTTTGAAGCTAA 1065
Score = 270 bits (146), Expect = 2e-71
Identities = 320/401 (80%), Gaps = 24/401 (6%)
Strand=Plus/Plus
Query 857 CAAGCTTGTTCCTGTTCCTGAAACCCTAACCGTCTTCACGGTCACCAAAACATTCGAGCA 916
||||||||||||||||||||||||||||||||||||||| || ||||||||||| || ||
Sbjct 261 CAAGCTTGTTCCTGTTCCTGAAACCCTAACCGTCTTCACTGTTACCAAAACATTAGAACA 320
Query 917 AGATAG-AAGTTTCAAGATTCTTTCAAAGTGGCAA-GAAATTGCGGACAATCTTGTTGAT 974
||| | ||| || |||||| |||| ||||||||| ||| |||| ||| ||| ||||
Sbjct 321 AGAC-GCAAGATTGAAGATTATTTCTAAGTGGCAACGAA-TTGCATCCAAGCTTATTGAA 378
Query 975 GAGCT-CTTCTTACGAGTGTT-CTTCACTGT-ATCTGGAAACAAAGCAAACAAGACAGTG 1031
||||| | | | |||||| || || | || |||||| || | ||||||||| |||
Sbjct 379 GAGCTACA-CATCCGAGTGGAACT-CAGAGCCAT-TGGAAATAACGGAAACAAGACTGTG 435
Query 1032 ACGATGGCCTACATAGGTCAGTTTCTTGGCGAGAAAGGCACCTTGATGGAGGTAATGAAG 1091
|| ||| |||||| |||||||||||||||| ||||||||| ||||||| |||| ||||||
Sbjct 436 ACAATGTCCTACAAAGGTCAGTTTCTTGGCAAGAAAGGCATCTTGATGAAGGTTATGAAG 495
Query 1092 AAGGATTTTCCAGAACTTGGGCTAACTCA-GAAGGATTGTATAGAAATGAGTTGGATCGA 1150
|||| ||||||||| || ||| | ||||| |||| ||||||| |||||||||||||| ||
Sbjct 496 AAGGCTTTTCCAGAGCTAGGGTTGACTCAAGAAG-ATTGTATCGAAATGAGTTGGATTGA 554
Query 1151 TTCCATTATTTACAACTC-TGGATTCCCAACAAACCCTCCTCCTCCTATTGA-GATTCTG 1208
|||| ||| | | |||||| |||||| | || ||||||||| | || ||
Sbjct 555 ATCCACCCTTTTCGG-TGGTGGATTTCCAACAGG---T--TC-TCCTATTGAAGTTT-TG 606
Query 1209 CTTCAAG-CAAAGTCTCCAATCGGAAAAGTTTACTTCAAAG 1248
||||||| ||| |||||| | ||||||| |||||||||||
Sbjct 607 CTTCAAGTCAA-GTCTCCTTTAGGAAAAGGTTACTTCAAAG 646
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69857509330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5