BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44400.1
Length=1930
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494546 jgi|Araly1|494546|fgenesh2_kg.8__362__AT5G44400.1 2543 0.0
Ahg948681 jgi|Araly1|948681|scaffold_800568.1 1081 0.0
Ahg330958 jgi|Araly1|330958|fgenesh1_pm.C_scaffold_8000301 1020 0.0
> Ahg494546 jgi|Araly1|494546|fgenesh2_kg.8__362__AT5G44400.1
Length=1680
Score = 2543 bits (1377), Expect = 0.0
Identities = 1593/1695 (94%), Gaps = 24/1695 (1%)
Strand=Plus/Plus
Query 145 aaTGGGAATTTCAAAACCACTCCCTC-----T-A--T-TTTCGATTTTAGTCCTCTATTT 195
||||||| |||||||||||||||||| | | | |||||||||| || ||||||||
Sbjct 1 AATGGGATTTTCAAAACCACTCCCTCTATTTTCATTTCTTTCGATTTTGGTGCTCTATTT 60
Query 196 TTCACTCTACACCATTACACCAACTTCTTCATTAGCCTCCCTCCAAGATCAATTCATCAA 255
|||| |||||||||| |||||||||||||||||||||||||| || |||||||| |||||
Sbjct 61 TTCATTCTACACCATAACACCAACTTCTTCATTAGCCTCCCTACAGGATCAATTTATCAA 120
Query 256 CTGTGTCCAAAGAAACACACATGTTTACTTCCCACTTGAGAAAACGTTCTTTGCTCCTAC 315
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 CTGTGTCCAAAGAAACACACATGTTTACTTCCCACTTGAGAAAACATTCTTTGCTCCTAC 180
Query 316 AAAAAATGTCTCTATGTTCAGCCAAGTTCTTGAATCGACGGCTCAAAATCTCCGGTTCTT 375
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 181 GAAAAATGTCTCTATGTTCACCCAAGTTCTTGAATCGACGGCTCAGAATCTCCGGTTCTT 240
Query 376 GAAAAAATCCATGCCTAAACCGGGATTCATATTCAGCCCTATTCACGAGTCTCACGTACA 435
|||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 241 GAAACAATCCATGCCTAAACCGGGATTCATATTCAGCCCGATTCATGAGTCTCACGTACA 300
Query 436 AGCTTCCATCATTTGTTCCAAGAAACTCCGAATGCATCTCCGTGTCAGAAGCGGCGGTCA 495
||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 301 AGCTTCCATTATCTGTTCCAAGAAACTCCGAATGCATCTACGTGTCAGAAGCGGCGGTCA 360
Query 496 CGACTACGAAGGCTTGTCTTATGTCTCTCAGATCGATAAACCGTTTATATTGATGGATCT 555
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 CGACTACGAAGGCTTGTCTTATGTCTCTCAAATCGATAAACCGTTTATATTGATGGATCT 420
Query 556 GTCAAAGATGAGACAGGTCAACATTAATATTCAAGACAACAGTGCTTGGGTTCAATCTGG 615
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTCAAAGATGAGACAAGTCAACATTAATATTCAAGACAACAGTGCTTGGGTTCAATCTGG 480
Query 616 TGCCACTGTTGGTGAACTTTATTACAGGATTGCGGAGAAGAGCAAAGTCCATGGGTTCCC 675
||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 481 TGCTACAGTTGGTGAACTTTATTACAGGATTGCAGAGAAGAGCAAAGTCCATGGGTTCCC 540
Query 676 GGCGGGTTTGTGCTCGAGCTTAGGCATAGGAGGACACATAACAGGCGGTGCGTACGGTTC 735
|||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 541 GGCGGGGTTGTGCTCGAGCTTAGGCATAGGAGGGCACATAACAGGCGGTGCATACGGTTC 600
Query 736 CATGATGCGGAAATATGGTCTAGGTGCAGACAATGTTCTAGACGCAAAGATTGTTGATGC 795
||||||| | ||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 601 CATGATGAGAAAATACGGTCTCGGTGCAGACAATGTTCTAGACGCAAAAATTGTTGATGC 660
Query 796 CAACGGTAAATTACTCGATAGAGCCGCGATGGGTGAGGATACATTTTGGGCTATTAGAGG 855
||| |||| ||||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 661 CAATGGTAGATTACTCGACAGGGCCGCGATGGGTGAGGATACATTTTGGGCGATTAGAGG 720
Query 856 AGGCGCTGGAGGGAGTTTTGGGATAATTCTAGCATGGAAGATCAAGCTTGTTCCTGTTCC 915
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGGCGCTGGAGGGAGTTTTGGAATAATTCTAGCATGGAAGATCAAGCTTGTTCCTGTTCC 780
Query 916 TAAGACCGTGACCGTCTTTACCGTCACCAAAACGTTACAACAAGACGTGGGTAACAAGAT 975
| |||||||||||||||| |||||||||||||||||||| |||||||| || ||||||||
Sbjct 781 TCAGACCGTGACCGTCTTCACCGTCACCAAAACGTTACATCAAGACGTTGGCAACAAGAT 840
Query 976 TATCTCAAAGTGGCAAAGAGTTGCGGACAAGCTTGTTGAAGAGCTATTCATCAGAGTGCT 1035
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 841 TATCTCAAAGTGGCAAAGAGTTGCGGACAAGCTTGTTGAAGAGCTATTTATCAGAGTGCT 900
Query 1036 CTTCAACGTAGCTGGAACCGGTGGGAACAAGACTGTGACGACGTCGTACAATGCTCTGTT 1095
||||||||||||||||| ||||||||||||||||||||| || |||||||| ||||||||
Sbjct 901 CTTCAACGTAGCTGGAAACGGTGGGAACAAGACTGTGACAACATCGTACAACGCTCTGTT 960
Query 1096 TCTTGGCGGGAAAGGAACGCTGATGAACGTTATGAAGAAGAGTTTCCCCGAGCTAGGGCT 1155
||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||
Sbjct 961 TCTTGGCGGGAAAGGCACATTGATGAAAGTTATGAAGAAGAGTTTCCCCGAGCTAGGGCT 1020
Query 1156 AACATTTAAAGATTGTATCGAAATGAGCTGGCTTGAATCCATTGCTTACATTTCTGGATT 1215
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1021 AACACTTAAAGATTGTATCGAAATGAGCTGGCTTGAATCCATTTCTTACATTTCTGGATT 1080
Query 1216 CCCGACCCACACGCCTACTAATGTTTTGCTTCAAGGGAAGTCTCCGTTCCCAAAGGTCAG 1275
||| | |||||| ||||||| |||||||||||| |||||||| || ||||||||| ||||
Sbjct 1081 CCCCAGCCACACTCCTACTAGTGTTTTGCTTCAGGGGAAGTCGCCTTTCCCAAAGATCAG 1140
Query 1276 CTTCAAAGCCAAATCGGATTTCGTGAAAACCCCGATTCCCGAATCCGGGCTTCAAGGGAT 1335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CTTCAAAGCCAAATCGGATTTCGTGAAAACCCCGATTCCCGAATCCGGGCTTCAAGGGAT 1200
Query 1336 CTTCAAGAAGCTACTTAAAGAAGATATTCCATTGATGATATGGAATCCTTACGGAGGAAT 1395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CTTCAAGAAGCTACTTAAAGAAGATATTCCATTGATGATATGGAATCCTTACGGAGGAAT 1260
Query 1396 GATGGCGAAAATCCCCGAATCCCAAATCCCTTTTCCGCATCGAAAAGGAGTCCTCTTCAA 1455
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1261 GATGGCGAAAATCCCCGAATCACAAATCCCTTTTCCGCATAGAAAAGGAGTCCTCTTCAA 1320
Query 1456 GGTTCAGTACGTAACAAGTTGGCTAGACAGTGACAAGAGACCGAGCAGACACATCAACTG 1515
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1321 AGTTCAGTACGTAACAAGTTGGCTAGACAGCGACAAGAGACCGAGCAGACACATCAACTG 1380
Query 1516 GATCAGAGATCTCTATAGTTACATGACGCCTTATGTCTCAAGTAACCCACGAGAAGCTTA 1575
||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1381 GATCAGAGATCTCTACAATTACATGACGCCTTATGTCTCAAGTAATCCACGAGAAGCTTA 1440
Query 1576 CGTGAACTACCGTGATTTAGACCTGGGAAGGAACACGAAAGACGTGAAAACATGCATCAA 1635
||||||||||| ||| ||||||| |||| |||||| |||||||||||||||||||||||
Sbjct 1441 TGTGAACTACCGCGATCTAGACCTCGGAAAGAACACAAAAGACGTGAAAACATGCATCAA 1500
Query 1636 ACAAGCTCAAGTCTGGGGAGCTAACTACTTCAAAAACAATTTCAACAGATTGATGATGAT 1695
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1501 ACAAGCTCAAGTCTGGGGAGCTAACTACTTCAAAAACAATTTCAACAGATTGATGAAGAT 1560
Query 1696 TAAAGCAAAGGTTGATCCAGAGAACTTCTTTAGACACGAGCAGAGCATTCCACCTATGAT 1755
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1561 TAAATCAAAGGTTGATCCAGAGAACTTCTTCAGACACGAGCAGAGCATTCCACCTATGAT 1620
Query 1756 GTAACGAGGTCAATCAAATAAGAATAAATTAGAAGAAAATCAGATAATGGTTCTTCTGTA 1815
||||||| ||| |||| || |||||||||||||||||||||||||||||
Sbjct 1621 GTAACGA----AAT-AAAT-----TA-----GAAGAAAATCAGATAATGGTTCTTCTGTA 1665
Query 1816 TTTCGGAAAAATGTT 1830
||||||||| |||||
Sbjct 1666 TTTCGGAAATATGTT 1680
> Ahg948681 jgi|Araly1|948681|scaffold_800568.1
Length=1666
Score = 1081 bits (585), Expect = 0.0
Identities = 1293/1626 (80%), Gaps = 84/1626 (5%)
Strand=Plus/Plus
Query 171 TATTTTCGATTTTAGTCCTCTATTTTTCACTCTACACCATTACACCAACTTCTTCATTAG 230
|||||| | ||||||| | ||| | ||| | || ||| |||||||||||||||| ||
Sbjct 56 TATTTT-GTTTTTAGTTTTTTATCTCTCATTATATTGCATAACACCAACTTCTTCATCAG 114
Query 231 CCTCCCTCCAAGATCAATTCATCAACTGTGTCCAAAGAAACACACATGTTTAC-TTCCCA 289
|||||||||||||||||||||| ||||||||| |||||||||| ||||||| | || |||
Sbjct 115 CCTCCCTCCAAGATCAATTCATAAACTGTGTCAAAAGAAACACGCATGTTT-CTTTTCCA 173
Query 290 CTTGAGAAAACGTTCTTTGCTCCTACAAAAAATGTCTCTATGTTCAGCCAAGTTCTTGAA 349
|| |||| ||||| ||||||||| ||||||| |||||||||||||||||||| ||||||
Sbjct 174 CTCGAGACTACGTTATTTGCTCCTGCAAAAAACGTCTCTATGTTCAGCCAAGTCCTTGAA 233
Query 350 TCGACGGCTCAAAATCTCCGGTTCTTGAAAAAATCCATGCCTAAACCGGGATTCATATTC 409
|| |||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||
Sbjct 234 TCAACGGCTCAAAATCTCCAGTTCTTGGCAAAATCCTTGCCTAAACCGGGATTCATATTT 293
Query 410 AGCCCTATTCACGAGTCTCACGTACAAGCTTCCATCATTTGTTCCAAGAAACTCCGAATG 469
|| || |||||||||||||| || |||||||| ||||| ||||| ||||||||| ||||
Sbjct 294 AGGCCAATTCACGAGTCTCAAGTCCAAGCTTCTATCATCTGTTCTAAGAAACTCGGAATT 353
Query 470 CATCTCCGTGTCAGAAGCGGCGGTCACGACTACGAAGG-CTTGTCTTATGTCTCTCAGAT 528
||| | ||||| ||||| ||||||||||| | || ||| ||||||||||||||| | |||
Sbjct 354 CATTTTCGTGTTAGAAGTGGCGGTCACGATTTCG-AGGCCTTGTCTTATGTCTCACGGAT 412
Query 529 CGATAAACCGTTTATATTGATGGATCTGTC-AAAGATGAGACAGGTCAACATTAATATTC 587
|| |||||||||||||| || |||||||| ||| ||||||| ||| | || |||||
Sbjct 413 TGAAAAACCGTTTATATTAATCGATCTGTCGAAA-TTGAGACAAGTCGATGTTGATATTG 471
Query 588 AAGA-CAACAGTGCTTGGGTTCAATCTGGTGCCACTG-TTGGTGAACTTTATTACAGGAT 645
|| | ||| ||||||||||||||| ||||||| || | ||||||| ||||| ||||| ||
Sbjct 472 AA-ACCAATAGTGCTTGGGTTCAACCTGGTGCTAC-GCTTGGTGAGCTTTACTACAGAAT 529
Query 646 TGCGGAGAAGAGCAAAGTCCATGG-GTTCCCGGCGGGTTTGTGCT-CGAGCTTAGGCATA 703
||| |||||||||||||||||||| ||||| ||||||||||| | ||||| ||||||||
Sbjct 530 TGCAGAGAAGAGCAAAGTCCATGGATTTCCC-GCGGGTTTGTG-TACGAGCGTAGGCATA 587
Query 704 GGAGGACACATAACAGGCGGTGCG-TACGGTTCCATGATGCGGAAATATGGTCTAG-GTG 761
|| || | || ||||| |||| | ||||||||| ||||| |||| |||||||| | | |
Sbjct 588 GGTGGGTATATGACAGGGGGTG-GATACGGTTCCTTGATGAGGAAGTATGGTCTTGCG-G 645
Query 762 CAGACAATGTTCTAGACGCAAAGATTGTTGATGCCAACGGTAAATTACTCGATAGAGCCG 821
||| ||||||||||||| |||||| |||||||| || |||||||||||||| ||| |||
Sbjct 646 GAGATAATGTTCTAGACGTAAAGATGGTTGATGCAAATGGTAAATTACTCGACAGAACCG 705
Query 822 CGATGGGTGAGGATAC-ATTTTGGGCTATTAGAGGAGGCGCTGGAGGGAGTTTTGGGATA 880
||||||||||||| | ||||||||| |||||||||||| ||||| |||||||||||||
Sbjct 706 CGATGGGTGAGGA-CCTATTTTGGGCGCTTAGAGGAGGCGGTGGAGCGAGTTTTGGGATA 764
Query 881 ATTCTAGCATGGAAGATCAAGCTTGTTCCTGTTCCTAAGACCGTGACCGTCTTTACCGTC 940
|||| |||||||||||||||||||||||||||||| ||||||| ||| |||| |||||
Sbjct 765 GTTCTCGCATGGAAGATCAAGCTTGTTCCTGTTCCTGAGACCGTAACCATCTTCACCGTT 824
Query 941 ACCAAAACGTTACAACAAGACGTGGG-TAACAAGATTATCTCAAAGTGGCAA-AGAGTTG 998
|||||||||||| ||||||||| | | |||||||| || ||||||||| | | |||
Sbjct 825 ACCAAAACGTTAAAACAAGACGCAAGATTG-AAGATTATTTCTAAGTGGCAACAAA-TTG 882
Query 999 CGGACAAGCTTGTTGAAGAGCTATTCATCAGAGTGCT-CTTCA-ACGTAGCTGGAACCGG 1056
| ||||||||| ||||||||| |||| || || | || || | | | |||||
Sbjct 883 CATCCAAGCTTGTCGAAGAGCTACACATCCGATTGGTACT-CAGA-GCCGTTGGAAATAA 940
Query 1057 TGGGAACAAGACTGTGACGACGTCGTACA-ATGCTCTGTTTCTTGGCGGGAAAGGAACGC 1115
||| ||||||||| | || | ||| || | | || ||||||||||| |||||| || |
Sbjct 941 TGGAAACAAGACTATTACAATGTCCTATTTAGG-TCAGTTTCTTGGCGAGAAAGGCAC-C 998
Query 1116 T-GATGAACGTTATGAAGAAG-AGTTTCCCCGAGCTAGGGCTAACATTTAAAG-ATTGTA 1172
| |||||| |||||| ||||| | ||||| || |||||| |||| | |||| ||||||
Sbjct 999 TTGATGAAGGTTATGGAGAAGGATTTTCCA-GAACTAGGGTTAAC-TCAAAAGGATTGTA 1056
Query 1173 TCGAAATGAGCTGGCTTGAATCCATTGCTTA-C-ATTTCTGGATTCCCGACCCACACGCC 1230
||||||||||||| ||||||||| ||| | || |||||| || || | ||
Sbjct 1057 CCGAAATGAGCTGGATTGAATCCACC-CTTTTCCATGG-TGGATTTCCAACTGGTTCTCC 1114
Query 1231 TACT-AATGTTTTGCTTCAAGGGAAGTCTCCGTTCCCAAAGG-TCAGCTTCAAAGCCAAA 1288
|| | || ||||||||||| | ||||| || || ||| | | | ||||||||| ||
Sbjct 1115 TATTGAAA-TTTTGCTTCAACGCAAGTCGCCTTTAGGAAAAGATTA-CTTCAAAGC-AAC 1171
Query 1289 -TCGGATTTCGTGAAA-ACCCCGATTCCCGAATCCGGGCTTCAAGGGA-TCTTCAAGAAG 1345
|| |||||||| ||| | || ||||| | | ||||| ||| ||| | ||||| |||
Sbjct 1172 GTCAGATTTCGTTAAAGAACCT-ATTCCTGTTTTAGGGCT-CAAAGGAATTTTCAA-AAG 1228
Query 1346 CT--ACTTAAAG-AA-GATATTCCATTGATGATA-TGGAATCCTTACGGAGGAATGATGG 1400
| | || ||| || |||| ||| | | | |||| ||| ||||| || ||||||
Sbjct 1229 ATTGA-TTGAAGGAAAGATAGA--ATTTCTCA-ACTGGACTCCCTACGGTGGTATGATGT 1284
Query 1401 CGAAAATCCCCGAATCC-CAAATCCCTTTTCCGCATC-GAAAAGGAGTCCTCTTCAAGGT 1458
|||||||| | |||||| | | |||| ||||| || | |||| ||| |||||||||| |
Sbjct 1285 CGAAAATCTCTGAATCCGCGA-TCCCATTTCCTCA-CAGAAACGGAACCCTCTTCAAGAT 1342
Query 1459 TCAGTACGTAA-C-AAGTTGGCTAGACAGTGACAAGAGACCGA-GC--AGACACATCAAC 1513
|| || || | || | ||||||| | |||||||| | ||| | ||| | |||||
Sbjct 1343 TCTCTAT-TACGCGAACT-GGCTAGAGAATGACAAGACATCGATGAGTAGAAAAATCAAA 1400
Query 1514 TGGATCAGAGATCTCTATAGTTACATGACGCCTTATGTCTCAAGTAACCCACGAGAAGCT 1573
||||||| ||| | || ||||||||| |||||||||||||||| || ||| |||||||
Sbjct 1401 TGGATCAAAGAGATATACAGTTACATGGCGCCTTATGTCTCAAGCAATCCAAGAGAAGCA 1460
Query 1574 TACGTGAACTACCGTGATTTAGACCTGGGA-AGGAAC-ACGAA-AGACGTGAAAACATG- 1629
|| ||||||||| | ||| ||||| | ||| || ||| | ||| | || | ||| |
Sbjct 1461 TATGTGAACTACAGAGATCTAGACTTCGGACAG-AACGA-GAACA-AC-TCAAAGTTTAA 1516
Query 1630 CATCAAAC-AAGCTCAAGTCTGGGGAGCTAACTACTTCAAAAACAATTTCAACAGATTGA 1688
| ||| | ||||| || ||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1517 CTTCAT-CGAAGCTAAAATCTGGGGAGCTAAGTACTTCAAAGACAATTTCAACAGATTGG 1575
Query 1689 TGATGATTAAAGCAAAGGTTGATCCAGAG-AACTTCTTTAGACACGAGCAGAGCATTCCA 1747
||| ||||||| ||||||||||||| || |||||||| || ||||||||||| || |||
Sbjct 1576 TGAAGATTAAAACAAAGGTTGATCC-GAATAACTTCTTCAGGCACGAGCAGAGTATCCCA 1634
Query 1748 CCTATG 1753
||||||
Sbjct 1635 CCTATG 1640
> Ahg330958 jgi|Araly1|330958|fgenesh1_pm.C_scaffold_8000301
Length=1626
Score = 1020 bits (552), Expect = 0.0
Identities = 1276/1616 (79%), Gaps = 88/1616 (5%)
Strand=Plus/Plus
Query 176 TCGATTTTAGTCCTCTATTTTTCACTC--TACACCATTACACCAACTTCTTCATTAGCCT 233
||| |||||| ||| ||| |||| || |||| || |||||| |||||||| | |||
Sbjct 40 TCGTTTTTAGCCCTATATATTTCTTTCGTTACA--ATAACACCAGCTTCTTCA--A-CCT 94
Query 234 CCCTCCAAGATCAATTCATCAACTGTGTCCA-AAGAAACACACATGTTTACTTCCCACTT 292
| || |||||| | |||||||| ||| |||| || ||||||| |||| || |||||
Sbjct 95 CTCTACAAGATGATTTCATCAAATGTCTCCACAA-AAACACAAATGTCCGTTTTCCACTC 153
Query 293 GAGAAAACGTTCTTTGCTCCTACAAA-AAATGTC-TCTATGTTCAGCC-AAGTTC-TTGA 348
|| ||||||||||| ||||| ||| ||| || || || |||| || ||| || ||||
Sbjct 154 GACAAAACGTTCTTCACTCCT-GAAAGAAA-CTCTTCGATCTTCA-CCGAAG-TCTTTGA 209
Query 349 ATCGACGGCTCAAAATCTCCGGTT-CTTGAAAAAATCCATGCCTAAACCGGGATTCATAT 407
||||||||||||||||| ||||| | ||| || | ||||||||||||||||||||||
Sbjct 210 ATCGACGGCTCAAAATCAACGGTTAC-TGACCAAGGCAATGCCTAAACCGGGATTCATAT 268
Query 408 TCAGCCCTATTCACGAGTCTCACGTACAAGCTTCCATCATTTGTTCCAAGAAACTCCGAA 467
| || || ||||| |||||||| || |||||||| |||| ||||| |||||||| |||
Sbjct 269 TTAGGCCGATTCATGAGTCTCATGTTCAAGCTTCTGTCATCTGTTCGAAGAAACTTGGAA 328
Query 468 TGCATCTCCGTGTCAGAAGCGGCGGTCACGACTACGAAGGCTTGTCTTATGTCTCTCAGA 527
| ||| | ||||| ||||||||||||||||| ||||| ||| |||||||||| || | ||
Sbjct 329 TACATTTTCGTGTTAGAAGCGGCGGTCACGATTACGAGGGCGTGTCTTATGTTTCACGGA 388
Query 528 TCGATAAA-CCGTTTATATTGATGGATCTGTC-AAAGATGAGACAGGTCAACATTAATAT 585
|||| ||| |||||| |||| || ||| |||| ||| ||||||| |||| ||| ||||
Sbjct 389 TCGA-AAACCCGTTTGTATTAATCGATTTGTCGAAA-TTGAGACAAATCAATATTGATAT 446
Query 586 TCAAGACAACAGTGCTTGGGTTCAATCTGGTGCCACTGTTGGTGAACTTTATTACAGGAT 645
| ||||||| ||||||||||||||| ||||||| ||| ||||||| ||||| ||||| ||
Sbjct 447 TGAAGACAATAGTGCTTGGGTTCAAGCTGGTGCTACTATTGGTGAGCTTTACTACAGAAT 506
Query 646 TGCGGAGAAGAGCAAAG-TCCATGGGTTCCCGGCGGGTTTGTGCTCGAGCTTAGGCATAG 704
||| || |||||| ||| | ||||| ||||| || ||| ||| | |||| ||||||||||
Sbjct 507 TGCAGAAAAGAGC-AAGATTCATGGATTCCCTGCAGGTGTGTACCCGAGTTTAGGCATAG 565
Query 705 GAGGACACATAACAGGCGGTGCGTACGGTTCCATGATGCGGAAATATGGTCTAGGTGCAG 764
| || || |||||||||||||| ||||||||| ||||| |||| |||||||| | |||||
Sbjct 566 GTGGGCATATAACAGGCGGTGCATACGGTTCCTTGATGAGGAAGTATGGTCTTGCTGCAG 625
Query 765 ACAATGTTCTAGACGCAAAGATTGTTGATGCCAACGGTAAATTACTCGATAGAGCCGCGA 824
| |||||||||||||||||||| |||||||| || |||||||||||||| ||||||||||
Sbjct 626 ATAATGTTCTAGACGCAAAGATCGTTGATGCTAATGGTAAATTACTCGACAGAGCCGCGA 685
Query 825 TGGGTGAGGATAC-ATTTTGGGCTATTAGAGGAGG-CGCTGGAGGGAGTTTTGGGATAAT 882
||||||||||| | ||||||||| |||||||| || | |||||||||||||||||||||
Sbjct 686 TGGGTGAGGAT-CTATTTTGGGCGATTAGAGGCGGTAG-TGGAGGGAGTTTTGGGATAAT 743
Query 883 TCTAGCATGGAAGATCAAGCTTGTTCCTGTTCCT-AAGACCGTGACCGTCTTTACCGTCA 941
| || ||||||||||||||||||||||||||||| || ||| | |||||||| || ||||
Sbjct 744 TTTATCATGGAAGATCAAGCTTGTTCCTGTTCCTGAA-ACCATAACCGTCTTCACGGTCA 802
Query 942 CCAAAACGTTACAA-CAAGACGTGGGTAACAAGATTATCTCAAAGTGGCAA-AGAGTTGC 999
|||| || || || ||||| | || ||||||| | | ||||||||| | ||||||
Sbjct 803 CCAAGACATTG-AAGCAAGATGCAAGTTTCAAGATTCTTTTTAAGTGGCAACA-AGTTGC 860
Query 1000 GGACAAGCTTGTTGAAGAGCTATTCAT-CAGAGTGCTCTTCAAC-GTAGCTGGAACCGGT 1057
||||||||||||||||||||| ||| | | ||||| |||||| | |||| ||||| |
Sbjct 861 GGACAAGCTTGTTGAAGAGCTCTTCTTAC-GAGTGTTCTTCA-CTGTAGTTGGAAACAAA 918
Query 1058 GGGAACAAGACTGTGACGACGTCGTACA-ATGCTCTGTTTCTTGGCGGGAAAGGAACGCT 1116
| |||||||| || ||| | | |||| | | || ||||||||||| ||||| ||| ||
Sbjct 919 GCAAACAAGACAGTTTCGATGGCCTACATAGG-TCAGTTTCTTGGCGAGAAAGAAAC-CT 976
Query 1117 -GATGAACGTTATGAAGAAG-AGTTTCCCCGAGCTAGGGCTAACATTTAAAGATTGTATC 1174
|||| | || ||| ||||| | ||||| || ||||||||||| || ||||||||
Sbjct 977 TGATGGAGGTAATGGAGAAGGATTTTCCA-GAACTAGGGCTAACGCAGAAGGATTGTATA 1035
Query 1175 GAAATGAGCTGGCTTGAATCCATTGCTTACATTTCTGGATTCCCGACCCA-CACGCCTAC 1233
||||||| |||| | |||||||| ||||| ||||||||||| || | | | ||| |
Sbjct 1036 GAAATGAACTGGATCAAATCCATTATTTACAGCTCTGGATTCCCAACA-AGCTCTCCTCC 1094
Query 1234 TA--AT-G---TTTTGCTTCAAGGGAAGTCTCCG-TTCCCAAAGGTCAGCTTCAAAGCCA 1286
| || | |||||||||||| |||||||| || |||| | | ||| ||||| |
Sbjct 1095 TCCCATTGAGATTTTGCTTCAAGCAAAGTCTCCACTTGGAAAAGTTTA-CTTTAAAGCGA 1153
Query 1287 AATCGGATTTCG-TGAA-AACCCCGATTCCCGAATCCGGGCTTCAA-GGGAT-CTTCAAG 1342
|||||||||||| | || ||| ||||| | | ||||| ||| ||||| || ||||
Sbjct 1154 AATCGGATTTCGCTAAAGAACTT--ATTCCTGTTTTAGGGCT-CAAAGGGATGCT-CAAG 1209
Query 1343 AAGCTACTTAAAGAAGATATTCCATT-GATGATATGGAATCCTTACGGAGGAATGATGGC 1401
||| | ||| ||||||| |||| | |||| |||| ||||||||| |||| ||||
Sbjct 1210 AAGTTGCTTGAAGAAGACGCAGCATTAG-TGATTTGGACTCCTTACGGTGGAAAGATGAA 1268
Query 1402 GAAAATCCCCGAATCCCAAATCCCTTTTCCGCATCGAAAAGGAGTCCT-CTTCAAGGTTC 1460
|||||||| |||||| | ||||| ||||||||| |||| ||| || ||||| | |||
Sbjct 1269 TAAAATCCCTGAATCCGAGATCCCGTTTCCGCATAGAAACGGAA-CCAACTTCATGATTC 1327
Query 1461 AGTACGTAACA--AGTTGG-CTAGACAGTGACAAGAGACCGAGCAGACACATCAACTGGA 1517
| ||| || || || ||| | ||| || || || | ||| || || |||||| ||||
Sbjct 1328 AATAC-TA-CAGGAGCTGGTC-AGATAGCGAG--GA-ATCGAACAAACGCATCAAATGGA 1381
Query 1518 TCAGAGA-TCTCTATAGTTACATGACGCCTTATGTCTCAAGTAACCCACGAGAAGCTTAC 1576
||||||| | | || ||||||||||||||||| || ||||| || ||| || |||| ||
Sbjct 1382 TCAGAGAGT-TGTACAGTTACATGACGCCTTACGTTTCAAGCAATCCAAGACAAGCATAT 1440
Query 1577 GTGAACTACCGTGATTTAGACCTGGGA-AGGAACACGAA-AGACGTGAAAA-C-ATGCAT 1632
||||||||| | ||| ||||||||||| || |||| ||| | || | ||| | | | |
Sbjct 1441 GTGAACTACAGAGATCTAGACCTGGGACAG-AACAAGAACA-AC-TCAAAGTCTAA-CTT 1496
Query 1633 CAAACAAGCTCAA-GTCTGGGGAGCTAACTACTTCAAAAACAATTTCAACAGATTGATGA 1691
|| | ||||| || | ||||||||||| ||||||||| |||||||||| |||||| | |
Sbjct 1497 CATAGAAGCTAAAAGA-TGGGGAGCTAAGTACTTCAAAGACAATTTCAAAAGATTGGTAA 1555
Query 1692 TGATTAAAGCAAAGGTTGATCCAGAGAACTTCTTTAGACACGAGCAGAGCATTCCA 1747
||||||| |||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 1556 GGATTAAAACAAAGGTTGATCCAGATAACTTCTTTAGACACGAGCAGAGTATCCCA 1611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72523826480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5