BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44410.1
Length=1757
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494545 jgi|Araly1|494545|fgenesh2_kg.8__361__AT5G44410.1 2386 0.0
Ahg948675 jgi|Araly1|948675|scaffold_800562.1 1037 0.0
Ahg951814 jgi|Araly1|951814|scaffold_18400001.1 222 6e-57
> Ahg494545 jgi|Araly1|494545|fgenesh2_kg.8__361__AT5G44410.1
Length=1708
Score = 2386 bits (1292), Expect = 0.0
Identities = 1536/1656 (93%), Gaps = 8/1656 (0%)
Strand=Plus/Plus
Query 106 ACCGTCTCTGCATTAAGAAAATGGAGAttttgagatttttgctttctctctttatatatt 165
|||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
Sbjct 57 ACCGACTCTGCATTAACAAAATGGAGTTTTTGAGATTTTTGCTTTCTCTCTTTATAAAAG 116
Query 166 ttcttttgttgaatctttctctttcacattttcc-ttcgatttcAGCTCAAAGGACTAAC 224
||||| ||||||||||||| ||||| |||||||| || |||||||| |||||||||||||
Sbjct 117 TTCTTCTGTTGAATCTTTCCCTTTCTCATTTTCCGTT-GATTTCAGGTCAAAGGACTAAC 175
Query 225 CATGAAAACTTCCTCAAGTGTCTCTCTCACCGAATCAACGAGGACGACTCAAGAATCATA 284
|| ||| ||||||||| ||||||| ||||||| || ||||| |||| ||||||||||||
Sbjct 176 CACGAAGACTTCCTCAGGTGTCTCACTCACCGGATAAACGACCACGAATCAAGAATCATA 235
Query 285 CACACATCAAAAGATCCTTCGTATTTCTCAATCTTGAATTCTTCCATACAAAATCCAAGA 344
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 236 CACACATCAAAAGATCCTTCCTTTTTCTCAATCTTGAATTCTTCCATACAAAATCCAAGA 295
Query 345 TTCTTTGTTCTCGAAACACCTAAACCGGTTTCAATCATCACTCCGGTTCAAGCCACCGAT 404
|||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 296 TTCTCTGTTCTTGAAACACCTAAACCGGTCTCAATCATCACTCCGGTTCAAGCCACCAAT 355
Query 405 GTTCAATCTACGATTAAATGCGCACGGCTTCACGGTATACACATCAGGACTAGGAGTGGT 464
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 356 GTTCAATCTACGATTAGATGCGCACGGCTTCACGGTATCCACATCAGGACTAGGAGTGGT 415
Query 465 GGTCATGACTACGAAGG-TTTATCTTACATGGCTAAAAGCAGACCGTTCGTTGTCATTGA 523
|||||||||||||| || ||| ||||||||||| |||| |||||||||||||||| ||||
Sbjct 416 GGTCATGACTACGAGGGCTTT-TCTTACATGGCCAAAATCAGACCGTTCGTTGTCCTTGA 474
Query 524 TTTGAGAAATCTCCGGTCTATTACATTAGATGTTGATAACCGGACCGGTTGGGTTCAATC 583
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 475 TTTGAGAAATCTCCGGTCTATAACATTAGATGTTGATAACCGGACCGGTTGGGTTCAGTC 534
Query 584 CGGAGCTACAATTGGGGAATTGTACTATGAGATTGGAAAATTAAGCAAATCTTTGGCCTT 643
|||| ||||||||||||||||||||||| ||||||| ||||| ||||||||||| |||||
Sbjct 535 CGGAACTACAATTGGGGAATTGTACTATAAGATTGGGAAATTGAGCAAATCTTTAGCCTT 594
Query 644 TCCGGCCGGTCTTTATCCAACCGTTGGCATCGGAGGGCAATTCGGAGGTGGTGGGTACGG 703
|||||||||||| || ||||| || || ||||||||||||||||||||||| ||||| ||
Sbjct 595 TCCGGCCGGTCTATACCCAACGGTCGGTATCGGAGGGCAATTCGGAGGTGGAGGGTATGG 654
Query 704 TACGTTGATGAGAAAATACGGTTTATCGGCGGACAATGTAATTGATGCACATATTGTTGA 763
|| ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 655 AACATTGATGAGAAAATACGGTTTATCGGCGGATAATGTAATTGACGCACATATCGTTGA 714
Query 764 CGCGAATGGAAGCTTTCTTGACCGACAAGGCATGGGTGAAGATTTCTTTTGGGCTATCCG 823
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 715 TGCGAACGGAAGCTTTCTTGACCGACAAGGCATGGGTGAGGATTTCTTTTGGGCTATTCG 774
Query 824 TGGAGGCGGAGGATCAAGCTTCTCTGTTGTCCTGTCATGGAAGATTAGATTGCTTGATGT 883
|||||| |||||||| || || | ||||||||| |||||||||||||||||||| |||||
Sbjct 775 TGGAGGGGGAGGATCGAGTTTTTGTGTTGTCCTATCATGGAAGATTAGATTGCTCGATGT 834
Query 884 TCCGTCGGTAGTAACGGTCTTTAAAGTCGTGAAAACATCGGAAAAAGAGGCTGTCTCGAT 943
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 835 TCCGTCGGTAGTAACGGTCTTTAACGTCGTGAAAACATCGGAAAAAGATGCTGTCTCGAT 894
Query 944 CATCAACAAGTGGCAGTATATTGCGGATAAGGTTCCTAATGATCTTTTCATCAGAGCTAT 1003
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 895 CATCAACAAGTGGCAGTATATTGCGGATAAGGTTCCAAATGATCTTTTCATCAGAGCTAT 954
Query 1004 GCTACAGAAGGAAACCGAGGTTTATGCTTCGTTCCCGGGACTTTATCTCGGTCCGGTAAG 1063
| | ||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 955 GTTGCAGAAGGAAACCGAGGTTTATGCTTCGTTTCCAGGACTTTATCTCGGTCCGGTAAG 1014
Query 1064 CGATCTATTAGCATTGATGAAAGATAAGTTTCCGGAATTAGGTCTTGAGATTGGAAATTG 1123
|||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1015 CGATCTATTAGCGTTAATGAAAGATAAGTTTCCGGAATTAGGTCTTGAGATTGGAGATTG 1074
Query 1124 TAGAGAAATGAGTTGGATTGAGTCTGTTCTCTGGTTTATAAAAGGAGAATCAATGGAAAT 1183
||||||| ||| ||||||||||||||||||||||||| | |||| | ||||||||||||
Sbjct 1075 TAGAGAAGTGAATTGGATTGAGTCTGTTCTCTGGTTTGTTAAAGAACAATCAATGGAAAC 1134
Query 1184 TCTTGCGAAACGGAAA-CGAACGTCAAGATCTTTCAAGGGAAAAGATGATTTCATCGAAG 1242
||||| |||||| ||| ||||| || |||||||||||||||||||||||||| ||||||
Sbjct 1135 TCTTGTGAAACG-AAAGCGAACCTCGAGATCTTTCAAGGGAAAAGATGATTTTGTCGAAG 1193
Query 1243 AACCGATACCTAAAACCGCGATTCAGTATCTTTGGAGACGATTCGAGGCGCCCGAGGCTC 1302
|||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1194 AACCGATACCTAAACCCGCGATTCGGTATCTTTGGAAACGATTCGAGGCGCCCGAGGCTC 1253
Query 1303 GGCTTGCAAAGATCATACTCACTCCATTTGGTGGCAAAATGAGTGAAATTGCGGA-TAAC 1361
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1254 GGCTTGCAAAGATCACACTCACTCCATTTGGTGGCAAAATGAGTGAAATAGCGGAATAT- 1312
Query 1362 GAAATACCATTCCCACATAGAGAAGGTAATCTTTATGAGATTCAATATTTAGCTTATTGG 1421
|||| |||||||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 1313 GAAACACCATTCCCACATAGAGAGGGGAATCTTTATGAGATTCAATATTTGGCTTATTGG 1372
Query 1422 AGTGAAGAAGAAGATAAGAACAAGACTAATACTGAAAAGTATTTGAGATGGGTCGAGAGT 1481
|||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 1373 AGTGAAGAAGAAGATAAGAACAAGACTAATACAGAGAAGTATTTGAGATGGGTGGAGAGT 1432
Query 1482 GTATACGAATTTATGACTCCTTATGTTTCAAAATCTCCACGAAGAGCTTATGTTAATTTT 1541
||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||| |||
Sbjct 1433 GTATATGAATTTATGACTCCTTATGTTTCGAAATCTCCAAGAAGAGCTTATGTTAACTTT 1492
Query 1542 AGAGACATTGATTTGGGAATGTATCTTGGGTTGAATATGAAGACAAAGTACGAGGAAGCA 1601
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1493 AGAGACATTGATTTGGGAATGTATCTTGGGATGAACATGAAGACAAAGTACGAGGAAGCA 1552
Query 1602 AAGGTTTGGGGAGTGAAGTATTTCAAGAACAATTTCGATAGATTGGTGAGAGTTAAAACA 1661
||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1553 AAGATTTGGGGAGTGAAGTATTTCAAGAACAACTTCGATAGATTGGTGAGAGTGAAAACA 1612
Query 1662 AATGTTGATCCAATGGATTTCTTCTGTGATGAACAAAGTATACCAATTATGAAATATGTT 1721
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||
Sbjct 1613 AATGTTGATCCAATGGATTTCTTTTGTGATGAACAGAGTATTCCAATTATGAAATCTGTT 1672
Query 1722 AATGATATTTGAAATAGTCAAATTTGTTTCCCTTGC 1757
||||||||||||||| |||||||||||||| ||||
Sbjct 1673 AATGATATTTGAAATTTTCAAATTTGTTTCCTTTGC 1708
Score = 56.5 bits (30), Expect = 6e-07
Identities = 54/64 (84%), Gaps = 7/64 (11%)
Strand=Plus/Plus
Query 1 CAACATAAGAAACAGACACAACATAAAAAGTATCTAACACATACCCACTTGATATAAACA 60
||||||||||||||||||||||||||||| | | || | | || |||||||||||| |
Sbjct 1 CAACATAAGAAACAGACACAACATAAAAA--A-C-AAT-CTTGCC-ACTTGATATAAA-A 53
Query 61 AAAA 64
||||
Sbjct 54 AAAA 57
> Ahg948675 jgi|Araly1|948675|scaffold_800562.1
Length=1653
Score = 1037 bits (561), Expect = 0.0
Identities = 1221/1529 (80%), Gaps = 88/1529 (6%)
Strand=Plus/Plus
Query 221 TAACCATGAAAACTTCCTCAAGTGTCTCTCTCACCGAATCAACG--AGGA-CGAC---T- 273
|||||| ||| |||| || |||||||| |||||| | || |||| | | || | |
Sbjct 102 TAACCACGAAGACTTTCTTAAGTGTCTTTCTCACAGGATAAACGACAACACCGTCGTATC 161
Query 274 CAAGAATCATACACACAT-CAAAAGATCCTTCGTATTT-CTCAATCTTGAATTCTTCCAT 331
||| | |||||||||| | |||| | | |||| | ||| || |||||| ||||||||||
Sbjct 162 CAA-AGTCATACACACTTCCAAAGGCT-CTTCCT-TTTGTTCCATCTTGGATTCTTCCAT 218
Query 332 ACAAAATCCAAGATTCTTTGTT-CTCGAAACACCTAAACCGGTTTCAATCATCACTCCGG 390
||||||||||||||||| |||| || ||||||||||||||||| ||||||||||||||||
Sbjct 219 ACAAAATCCAAGATTCTCTGTTCCT-GAAACACCTAAACCGGTCTCAATCATCACTCCGG 277
Query 391 TTCAAGCCACCGATGTTC-AATC-TACGATTAAATGCGCACGGCTTCACGGTATACACAT 448
|| |||||| || |||| || | | | || | |||||||||||| || ||||| || |
Sbjct 278 TTAAAGCCAGTGACGTTCAAACCGT-C-ATCAGATGCGCACGGCTGCATGGTATCCATGT 335
Query 449 CAGGACTAGGAGTGGTGGTCATGACTACGAAGGTTTATCTTACATGGC-TAAAAGCAGAC 507
|||||| | || | ||||| | || |||||| ||||||||| || || || || ||
Sbjct 336 AAGGACTCGCAGCGCCGGTCACGGCTGGGAAGGTCAATCTTACATCGCGTACAA-CAAAC 394
Query 508 CGTTCGTTGTCATTGAT-TTGAGAAATCTCCGGTCTATTA-CATTAGATGTTGATAACCG 565
| ||||| ||||| ||| || || ||||| ||||||| || ||||| | |||||| ||||
Sbjct 395 CATTCGTCGTCATCGATCTT-AGGAATCTTCGGTCTA-TATCATTAAACGTTGATGACCG 452
Query 566 GACCGGTTGGGTTCAATCCGGAGCTACAATTGGGGAATTGTACTATGAGATT-GGAAAAT 624
||| |||||||| ||| ||||||| || | ||| || || |||| ||||||| ||||||
Sbjct 453 GACTGGTTGGGTCCAAACCGGAGCAACGACTGGAGAGTTATACTTTGAGATTGGGAAAA- 511
Query 625 TAAGCAAATCT-TTGGCCTTT-CCGGCCGGTCTTTATCCAACCGTTGGCA-TCGGAGGGC 681
| ||||||| || | |||| |||||| || | | |||||||| || | |||| || |
Sbjct 512 CCACCAAATCTCTT-G-CTTTCCCGGCCAGTATCCACCCAACCGTCGG-AGTCGGTGGAC 568
Query 682 AATTCGGAGGTGGTGGGTACGGTACGTTGATGAGAAAATACGGTTTATCGGCGGACAATG 741
| || | || || || ||||| |||||| | ||||||||||||||| ||||||| ||
Sbjct 569 AGTTTAGCGGCGGAGGTTACGGCACGTTGCTTAGAAAATACGGTTTAGCGGCGGATAACA 628
Query 742 TAATTGATGCACATATTGTTGACGCGAATGGAAGCTTTCTTGACCGACAAGGC-ATGGGT 800
|||| ||||||| | | ||||||||| ||| || |||||||||||||| || ||||||
Sbjct 629 TAATCGATGCACTTGTGGTTGACGCGCGTGGGAGGATTCTTGACCGACAA-GCAATGGGT 687
Query 801 GAAGATTTCTTTTGGGCTATCCGTGGAGGCGGAGGATCAAGCTTCT-CTGTTGTCCTGTC 859
|| |||| ||||||||| || |||||||| || ||||||||||| | |||||| || ||
Sbjct 688 GAGGATTACTTTTGGGCGATTCGTGGAGGTGGCGGATCAAGCTT-TGGTGTTGTACTATC 746
Query 860 ATGGAAGATT-AGATT-GCTTGATGTTCCGTCGGTAGTAACGGTCTTTAAAGTCGTGAAA 917
||||||||| || || | | ||||||||||| || || || ||||||||| ||||
Sbjct 747 GTGGAAGATTAAG-TTAG-TCGATGTTCCGTCCACGGTCACCGTGTTTAAAGTCCAGAAA 804
Query 918 ACATCGGAAAAAGAGGCTGTCT-CGATCATCAACAAGTGGCAGTATATTGCGGATAAGGT 976
|||||||| ||||||||||| | |||||||||||||||||||||| |||| | ||||||
Sbjct 805 ACATCGGAGAAAGAGGCTGT-TAGGATCATCAACAAGTGGCAGTATGTTGCAGCTAAGGT 863
Query 977 TCCTAATGATCTTTTCATCAGAGCTATGCT--ACAGA--AG---GAAACCGAGGTTTATG 1029
||||||||||||||||||||| || | | | | ||| || |||| | || | |
Sbjct 864 TCCTAATGATCTTTTCATCAGCGCAACGTTGGAGAGATCAGACAAAAACTTA-GTGCACG 922
Query 1030 CTTCGTTCCCGGGACTTTATCTCGGTCCGGT-AAGCGATCTATTAGCATTGATGAAAGAT 1088
||| ||| ||||||||||||| |||||||| || |||||| || || |||||| ||||
Sbjct 923 CTTTGTTTACGGGACTTTATCTTGGTCCGGTGAA-CGATCTGTTGGCCTTGATGGAAGAA 981
Query 1089 AAGTTTCCGGAATTAGGTCTTGAGATTGGAA-ATTGTAGAGAAATGAGTTGGATTGAGTC 1147
||||||||||| ||| |||||||| ||||| |||| | ||| ||||||||| |||||||
Sbjct 982 AAGTTTCCGGAGTTAAATCTTGAGA-TGGAAGATTGCACAGAGATGAGTTGGGTTGAGTC 1040
Query 1148 TGTTCTCTGG-TT--T-A--T---AAAAGGAGAATC-AATGGAAATTCTTGCGAAACGGA 1197
||| |||||| || | | | ||||||||| || ||| |||| ||||| ||||
Sbjct 1041 TGTACTCTGGTTTGCTGATTTCCCAAAAGGAGAGTCGCTTGG-TGTTCTCGCGAATCGGA 1099
Query 1198 AACGAACGTC-AAGATCTTTCAAGGGAAAAGATGATTTCATCGAAGAACCGATACCTAAA 1256
| || || || | ||||||||||| ||||||||||| || ||||||||||||| |
Sbjct 1100 AGCGTACATCTCTG-TCTTTCAAGGGTAAAGATGATTTTGTCCAAGAACCGATACCCGAG 1158
Query 1257 ACCGCGATTC-AGTATCTTTGGAGACGATTCGAGGCGCCCGAGGCTCGGCTTGCAAAGAT 1315
| || |||| || | || ||||| ||||| |||||||| |||||||||||||||||| |
Sbjct 1159 GCTGCAATTCAAG-AGCTATGGAGGCGATTAGAGGCGCCTGAGGCTCGGCTTGCAAAGGT 1217
Query 1316 CATACTCACTCCATTTGGTGGCAAAATGAGTGAAATTGCGGATAACGAAATACCATTCCC 1375
|||| | |||||||||||||| |||||||||||||| || || |||||| ||| |||||
Sbjct 1218 CATATTGACTCCATTTGGTGGGAAAATGAGTGAAATCGCAGAGCACGAAACACCGTTCCC 1277
Query 1376 ACATAGAGAAGGTAATCTTTATGAGATTCAATATTTAGCTTATTGGAGTGAAGAAGAAGA 1435
|||| ||||||| ||||| ||||||||||| ||||| |||| |||||| ||||| |||||
Sbjct 1278 ACATCGAGAAGGGAATCTCTATGAGATTCAGTATTTGGCTTTTTGGAGAGAAGAGGAAGA 1337
Query 1436 TAAGAACAAGACT--AATACTGAAAAGTATTTGAGATGGGTCGAGAGTGTATACGAAT-T 1492
|||||||||| | || || || |||||| ||| |||||||||||| || ||| ||| |
Sbjct 1338 CAAGAACAAGA-TGGAA-ACAGAGAAGTATCTGAAATGGGTCGAGAGCGTTTAC-AATCT 1394
Query 1493 TATGACTCCTTATGTTTCAAAATCTCCACGAAGAGCTTATGTTAATTTTA-GAGA-CATT 1550
|||||||||||||||||| ||||||||| || |||||||||| ||||| | | || | ||
Sbjct 1395 TATGACTCCTTATGTTTCGAAATCTCCAAGAGGAGCTTATGTCAATTTCATG-GATC-TT 1452
Query 1551 GATTTGGGAATGTATCTTGGGTTGAATATGA--AGACAAAGTACGAGGAAGCAAAG-GTT 1607
|||||||||||||||||| | ||| | || |||||||||||||||||| |||| | |
Sbjct 1453 GATTTGGGAATGTATCTT--G--GAA-AGGAGGAGACAAAGTACGAGGAAGGAAAGAG-T 1506
Query 1608 TGGGGAGTGAAGTATTTCAAGAACAATTTCGATAGATTGGTGAGAGTTAAAACAAATGTT 1667
|||||||||||||||||||||||||||||||| ||||||||||| || ||||| | ||||
Sbjct 1507 TGGGGAGTGAAGTATTTCAAGAACAATTTCGAGAGATTGGTGAGGGTGAAAACGAGTGTT 1566
Query 1668 GATCCAATGGATTTCTTCTGTGATGAACA 1696
||||||| ||||||||||| ||||||||
Sbjct 1567 GATCCAACAGATTTCTTCTGCGATGAACA 1595
> Ahg951814 jgi|Araly1|951814|scaffold_18400001.1
Length=278
Score = 222 bits (120), Expect = 6e-57
Identities = 188/218 (86%), Gaps = 15/218 (7%)
Strand=Plus/Plus
Query 1485 TACGAAT-TTATGACTCCTTATGTTTCAAAATCTCCACGAAGAGCTTATGTTAATTTTA- 1542
||| ||| ||||||||||||||||||| ||||||||| || |||||||||| ||||| |
Sbjct 12 TAC-AATCTTATGACTCCTTATGTTTCGAAATCTCCAAGAGGAGCTTATGTCAATTTCAT 70
Query 1543 GAGA-CATTGATTTGGGAATGTATCTTGGGTTGAATATGA--AGACAAAGTACGAGGAAG 1599
| || | |||||||||||||||||||| | ||| | || ||||||||||||||||||
Sbjct 71 G-GATC-TTGATTTGGGAATGTATCTT--G--GAA-AGGAGGAGACAAAGTACGAGGAAG 123
Query 1600 CAAAG-GTTTGGGGAGTGAAGTATTTCAAGAACAATTTCGATAGATTGGTGAGAGTTAAA 1658
|||| | ||||||||||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 124 GAAAGAG-TTGGGGAGTGAAGTATTTCAAGAACAATTTCGAGAGATTGGTGAGGGTGAAA 182
Query 1659 ACAAATGTTGATCCAATGGATTTCTTCTGTGATGAACA 1696
|| | ||||||||||| ||||||||||| ||||||||
Sbjct 183 ACGAGTGTTGATCCAACAGATTTCTTCTGCGATGAACA 220
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65934214095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5