BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44417.1
Length=1515
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948675 jgi|Araly1|948675|scaffold_800562.1 1640 0.0
Ahg948672 jgi|Araly1|948672|scaffold_800559.1 1164 0.0
Ahg494545 jgi|Araly1|494545|fgenesh2_kg.8__361__AT5G44410.1 697 0.0
Ahg951814 jgi|Araly1|951814|scaffold_18400001.1 348 8e-95
> Ahg948675 jgi|Araly1|948675|scaffold_800562.1
Length=1653
Score = 1640 bits (888), Expect = 0.0
Identities = 1015/1077 (94%), Gaps = 5/1077 (0%)
Strand=Plus/Plus
Query 442 TCTCTTGCTTTCCCAGCCAGTATCCACCCAACCGTTGGCGTCGGAGGCCAGTTTAGCGGC 501
|||||||||||||| |||||||||||||||||||| || ||||| || ||||||||||||
Sbjct 520 TCTCTTGCTTTCCCGGCCAGTATCCACCCAACCGTCGGAGTCGGTGGACAGTTTAGCGGC 579
Query 502 GGAGGTTACGGCACGTTGCTTAGAAAATACGGTTTAGCAGCGGATAACATAATCGATGCA 561
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 580 GGAGGTTACGGCACGTTGCTTAGAAAATACGGTTTAGCGGCGGATAACATAATCGATGCA 639
Query 562 CTTGTGGTTGACGCACGTGGGAGGATTCTTGACCGACAAGCAATGGGTGAGGATTACTTT 621
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 CTTGTGGTTGACGCGCGTGGGAGGATTCTTGACCGACAAGCAATGGGTGAGGATTACTTT 699
Query 622 TGGGCGATTCGTGGAGGCGGTGGATCGAGCTTTGGTGTTGTACTATCATGGAAGATTAAG 681
||||||||||||||||| || ||||| |||||||||||||||||||| ||||||||||||
Sbjct 700 TGGGCGATTCGTGGAGGTGGCGGATCAAGCTTTGGTGTTGTACTATCGTGGAAGATTAAG 759
Query 682 TTAGTCGATGTTCCGTCCACGGTCACCGTGTTTAAAGTCCAG-AAACATCGGAGAAAGAG 740
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 760 TTAGTCGATGTTCCGTCCACGGTCACCGTGTTTAAAGTCCAGAAAACATCGGAGAAAGAG 819
Query 741 GCCGTTAGGATCATCAACAAGTGGCAGTATGTTGCGGATAAGGTCCCTGAA-GATCTTTT 799
|| |||||||||||||||||||||||||||||||| | |||||| ||| || ||||||||
Sbjct 820 GCTGTTAGGATCATCAACAAGTGGCAGTATGTTGCAGCTAAGGTTCCT-AATGATCTTTT 878
Query 800 CATCAGCGCAACGTTGGAGAGATCAAACGAAAACTCT-GTGCAGGCTTTGTTTACTGGAC 858
||||||||||||||||||||||||| || |||||| | ||||| ||||||||||| ||||
Sbjct 879 CATCAGCGCAACGTTGGAGAGATCAGACAAAAACT-TAGTGCACGCTTTGTTTACGGGAC 937
Query 859 TCTATCTTGGTCCGGTGAATAATCTCTTGGCCTTGATGGAAGAAAAGTTTCCAGAATTAG 918
| ||||||||||||||||| |||| |||||||||||||||||||||||||| || |||
Sbjct 938 TTTATCTTGGTCCGGTGAACGATCTGTTGGCCTTGATGGAAGAAAAGTTTCCGGAGTTAA 997
Query 919 GTCTTGATATCCAAGACTGCACAGAGATGAGTTGGGTTGAATCTGCACTCTGGTTTGCTG 978
|||||| || |||| ||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 998 ATCTTGAGATGGAAGATTGCACAGAGATGAGTTGGGTTGAGTCTGTACTCTGGTTTGCTG 1057
Query 979 ATTTCTCTAAAGGAGAGTCTCTTGGTGTTCTCGCGAATCGGAAGCGTACATCTCTGTCTT 1038
||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 ATTTCCCAAAAGGAGAGTCGCTTGGTGTTCTCGCGAATCGGAAGCGTACATCTCTGTCTT 1117
Query 1039 TCAAGGGTAAAGACGACTTTGTCCAAGAACCGATACCCGAGGCTGCAATTCAAGCGCTAT 1098
||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1118 TCAAGGGTAAAGATGATTTTGTCCAAGAACCGATACCCGAGGCTGCAATTCAAGAGCTAT 1177
Query 1099 GGAGGCGATTAGAGGCGCCTGAGGCTCGGCTTGCAAAGGTTATATTAACTCCATATGGTG 1158
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||
Sbjct 1178 GGAGGCGATTAGAGGCGCCTGAGGCTCGGCTTGCAAAGGTCATATTGACTCCATTTGGTG 1237
Query 1159 GAAAAATGAGTGAAATCGCAGAGCACGAAACGTCATTCCCACATCGAAAAGGGAATCTCT 1218
| ||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||
Sbjct 1238 GGAAAATGAGTGAAATCGCAGAGCACGAAACACCGTTCCCACATCGAGAAGGGAATCTCT 1297
Query 1219 ATGAGATTCAGTATCTGGCTTTTTGGAGAGAAGAGGAAGACAAGAACAAGATGGAAACAG 1278
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 ATGAGATTCAGTATTTGGCTTTTTGGAGAGAAGAGGAAGACAAGAACAAGATGGAAACAG 1357
Query 1279 AGAAGTATCTGAAATGGGTTGAGAGCGTTTACAATCTTATGACTCCTTATGTTTCGAAAT 1338
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 AGAAGTATCTGAAATGGGTCGAGAGCGTTTACAATCTTATGACTCCTTATGTTTCGAAAT 1417
Query 1339 CTCCAAGAAGAGCTTATGTCAACTTCATGGATCTTGATTTGGGAATGTATCTTGGAAAGG 1398
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1418 CTCCAAGAGGAGCTTATGTCAATTTCATGGATCTTGATTTGGGAATGTATCTTGGAAAGG 1477
Query 1399 AAGAGACAAAGTACGAGGAAGGGAAGAGTTGGGGAGTGAAGTATTTCAAGAACAATTTCG 1458
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1478 AGGAGACAAAGTACGAGGAAGGAAAGAGTTGGGGAGTGAAGTATTTCAAGAACAATTTCG 1537
Query 1459 AGAGATTGGTGAGAGTGAAAACAAGCGTTGATCCAACAGATTTCTTCTGTGATGAAC 1515
||||||||||||| |||||||| || ||||||||||||||||||||||| |||||||
Sbjct 1538 AGAGATTGGTGAGGGTGAAAACGAGTGTTGATCCAACAGATTTCTTCTGCGATGAAC 1594
Score = 592 bits (320), Expect = 3e-168
Identities = 401/439 (91%), Gaps = 10/439 (2%)
Strand=Plus/Plus
Query 1 Aactctttgctctctctcttactc-tttctactgtatgtttctcctctctctactcttGT 59
||||||||||||||||| |||||| |||| ||||| |||||||||||||||| |||||||
Sbjct 34 AACTCTTTGCTCTCTCTTTTACTCTTTTC-ACTGTGTGTTTCTCCTCTCTCTGCTCTTGT 92
Query 60 TTTAGCTCATACCAATAACCACGAAGACTTTCTTAAGTGTCTTTCTCACCGGATTAACGA 119
|| || | | | ||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 93 TTCAG--C-T--C-ATAACCACGAAGACTTTCTTAAGTGTCTTTCTCACAGGATAAACGA 146
Query 120 CAACACCATCGTATCCAAAATCATACACACTTCCAAAGACTCATCCCTTTT-TTCCATCT 178
||||||| ||||||||||| |||||||||||||||||| ||| | |||||| ||||||||
Sbjct 147 CAACACCGTCGTATCCAAAGTCATACACACTTCCAAAGGCTC-TTCCTTTTGTTCCATCT 205
Query 179 TGGATTCTTCCATACAAAACCCAAGATTCTCGGTTCCCGAAACACCTAAACCGGTCTCAA 238
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 206 TGGATTCTTCCATACAAAATCCAAGATTCTCTGTTCCTGAAACACCTAAACCGGTCTCAA 265
Query 239 TCGTCACTCCGGTTAGAGCCAGTGACGTTCAAACCGTGATCAGATGCGCACTGCTTCACG 298
|| |||||||||||| ||||||||||||||||||||| ||||||||||||| ||| || |
Sbjct 266 TCATCACTCCGGTTAAAGCCAGTGACGTTCAAACCGTCATCAGATGCGCACGGCTGCATG 325
Query 299 GAATCCACGTAAGGACTCGCAGCGCCGGTCACGGCTGGGAAGGTCAATCTTACATTGCGT 358
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 326 GTATCCATGTAAGGACTCGCAGCGCCGGTCACGGCTGGGAAGGTCAATCTTACATCGCGT 385
Query 359 ACAACAAACCATACGTCGTCATCGATCTGAGGAATCTTCGGTCTATATCATTAGACGTCG 418
|||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||| |
Sbjct 386 ACAACAAACCATTCGTCGTCATCGATCTTAGGAATCTTCGGTCTATATCATTAAACGTTG 445
Query 419 AAAACCGGACTGGTTGGGT 437
| ||||||||||||||||
Sbjct 446 ATGACCGGACTGGTTGGGT 464
> Ahg948672 jgi|Araly1|948672|scaffold_800559.1
Length=1474
Score = 1164 bits (630), Expect = 0.0
Identities = 873/989 (88%), Gaps = 21/989 (2%)
Strand=Plus/Plus
Query 541 GCGGATAACATAATCGATGCACTTGTGGTTGACGC-ACGTGGGAGGATTCTTGACCGACA 599
||||||||||||||||||||||||||||| || || | ||||||||||||||||||||||
Sbjct 441 GCGGATAACATAATCGATGCACTTGTGGTCGATGCGA-GTGGGAGGATTCTTGACCGACA 499
Query 600 AGCAATGGGTGAGGA-T--TACTTTTGGGCGATTCGTGGAGGCGGTGGATCGAGCTTTGG 656
||||||||| ||||| | ||||||||||||||| ||||||| || ||||| ||||||||
Sbjct 500 AGCAATGGGCGAGGAGTACTACTTTTGGGCGATTTGTGGAGGGGGCGGATCAAGCTTTGG 559
Query 657 TGTTGTACTATCATGGAAGATTAAGTTAGTCGATGTTCCGTCCACGGTCACCGTGTTTAA 716
|| ||||||| ||||||||||| |||||||||||||| || || | |||||||||||
Sbjct 560 CATTATACTATCGTGGAAGATTAAATTAGTCGATGTTCCATCTACAATAACCGTGTTTAA 619
Query 717 AGTCCAGA-AACATCGGAGAAAGAGGCCGTTAGGATCATCAACAAGTGGCAGTATGTTGC 775
|||| ||| |||||| |||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 620 AGTCAAGAGAACATCAAAGAAAGAGGCCGTTAGGATCATCAACAAATGGCAATATGTTGC 679
Query 776 GGATAAGGTCCCTGAAGATCTTTTCATCAGCG-CAACGTTGGAGAGATCAAACGAAAACT 834
|||||||| ||||| ||||||||||| || | |||| ||||||||||||||| |||||
Sbjct 680 AGATAAGGTTCCTGATGATCTTTTCATTAG-GACAACATTGGAGAGATCAAACAAAAACG 738
Query 835 CTGTGCAGGCTTTGTTTACTGGACTCTATCTTGGTCCGGTGAATAATCTCTTGGCCTTGA 894
| || || |||||||| ||||| || ||||| ||||| | ||| ||||| ||||| ||||
Sbjct 739 CAGTACACGCTTTGTTCACTGGTCTTTATCTCGGTCCCGCGAACAATCTTTTGGCGTTGA 798
Query 895 TGGAAGAAAAGTTTCCAGAATTAGGTCTTGATATCCAAGACTGCACAGAGATGAGTTGGG 954
|||||||||||||||| |||||||||||||| | | | |||||||||||||||||||
Sbjct 799 TGGAAGAAAAGTTTCCGGAATTAGGTCTTGAGAAAGATGGTTGCACAGAGATGAGTTGGG 858
Query 955 TTGAATCTGCACTCTGGTTTGCTGATTTCTC-TAAAGGAGAGTCTCTTG--G-TGTTCTC 1010
|||| |||| ||||||||||||||||||| | ||||||||| ||||||| | |||||||
Sbjct 859 TTGAGTCTGTACTCTGGTTTGCTGATTTC-CATAAAGGAGAATCTCTTGATGATGTTCTC 917
Query 1011 GCGAATCGGA-AGCGTACATCTCTGTCTTTCAAGGGTAAAGACGACTTTGTCCAAGAACC 1069
|||||| || ||||||||||||| |||| |||||| ||||| || ||||||||||||||
Sbjct 918 ACGAATC-GAGAGCGTACATCTCTATCTTACAAGGGAAAAGATGATTTTGTCCAAGAACC 976
Query 1070 GATACCCGAGGCTGCAATTCAAGCGCTATGGAGGCGATTAGAGGCGCCTGAGGCTCGGCT 1129
||||||||||||||||||||||| |||||||||||||||||| || || |||||||| ||
Sbjct 977 GATACCCGAGGCTGCAATTCAAGAGCTATGGAGGCGATTAGACGCCCCCGAGGCTCGACT 1036
Query 1130 TGCAAAGGTTATATTAACTCCATATGGTGGAAAAATGAGTGAAATCGCAGAGCACGAAAC 1189
||||||| | ||||||||||||| |||||| |||||||||||||| ||||||||||||||
Sbjct 1037 TGCAAAGATCATATTAACTCCATTTGGTGGGAAAATGAGTGAAATTGCAGAGCACGAAAC 1096
Query 1190 G-TCATTCCCACATCGAAAAGGGAATCTCTATGAGATTCAGTATCTGGCTTTTTGGAGAG 1248
| ||||||||||||| |||||||||||||||||||||||||| |||||| |||||||
Sbjct 1097 ACT-ATTCCCACATCGAGAAGGGAATCTCTATGAGATTCAGTATGTGGCTTACTGGAGAG 1155
Query 1249 AAGAGGAAGACAAGAACAAGATGGAAACAGAGAAGTATCTGAAATGGGTTGAGAGCGTTT 1308
|||||||||||||||||| || || ||| | || |||||||||||||| || |||||||
Sbjct 1156 AAGAGGAAGACAAGAACATGACGGGGACAAATAAATATCTGAAATGGGTCGATAGCGTTT 1215
Query 1309 AC-AATCTTATGACTCCTTATGTTTCGAAATCTCCAAGAAGAGCTTATGTCAACTTCATG 1367
|| || ||||||||||| ||||||||||||||||||||| ||||||||||||| ||| ||
Sbjct 1216 ACGAA-CTTATGACTCCATATGTTTCGAAATCTCCAAGAGGAGCTTATGTCAATTTCGTG 1274
Query 1368 GATCTTGATTTGGGAATGTATCTTGGAAAGGAAGA-GACAAAGTACGAGGAAGGGAAGAG 1426
||| | |||||||| ||||||||||||||| |||| |||||||||||||||||| |||||
Sbjct 1275 GATATGGATTTGGGTATGTATCTTGGAAAG-AAGAAGACAAAGTACGAGGAAGGAAAGAG 1333
Query 1427 TTGGGGAGTGAAGTATTTCAAGAACAATTTCGAGAGATTGGTGAGAGTGAAAACAAGCGT 1486
||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 1334 TTGGGGAGTGAAGTACTTCAAGAACAATTTCGAGAGATTGGTGAGAGTTAAAACGAGTGT 1393
Query 1487 TGATCCAACAGATTTCTTCTGTGATGAAC 1515
||||||||||||||||||||| |||||||
Sbjct 1394 TGATCCAACAGATTTCTTCTGCGATGAAC 1422
Score = 438 bits (237), Expect = 5e-122
Identities = 312/348 (90%), Gaps = 6/348 (2%)
Strand=Plus/Plus
Query 93 TAAGTGTCTTTCTCACCGGATTAACGACAACACCATCGTATCCAAAATCATACACACTTC 152
||||||||||||| ||||||| ||| |||||||| ||| ||||||| |||||||||||||
Sbjct 2 TAAGTGTCTTTCTTACCGGATGAACCACAACACCGTCGAATCCAAAGTCATACACACTTC 61
Query 153 CAAAGACTCATCCCTTTTT-TCCATCTTGGATTCTTCCATACAAAACCCAAGATTCTCGG 211
||||||||| | ||||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 62 CAAAGACTC-TTCCTTTTTCTCCATTTTGGATTCTTCCATACAAAATCCAAGATTCTCGG 120
Query 212 TTCCCGAAACACCTAAACCGGTCTCAATCGTCACTCCGGTTAGAGCCAGTGACGTTCAAA 271
|| | |||||||||||||||||||||||| | |||||||||| |||||||||||||||||
Sbjct 121 TTTCTGAAACACCTAAACCGGTCTCAATCATAACTCCGGTTAAAGCCAGTGACGTTCAAA 180
Query 272 CCGTGATCAGATGCGCACTGCTT-CACGGAATCCACGTAAGGACTCGCAGCGCCGGTCAC 330
|||||||||||||||||| | || || ||||| || ||||||||||| ||||||||||||
Sbjct 181 CCGTGATCAGATGCGCACGG-TTGCATGGAATTCATGTAAGGACTCGGAGCGCCGGTCAC 239
Query 331 GGCTGGGAAGGTCAATCTTACATTGCGTACAACAAACCATACGTCGTCATCGATCTGA-G 389
||| ||||||| ||| |||||||||||||||||||||| ||| ||||||||| | | |
Sbjct 240 TGCTACGAAGGTCTATCGTACATTGCGTACAACAAACCATTCGTTGTCATCGATAT-ACG 298
Query 390 GAATCTTCGGTCTATATCATTAGACGTCGAAAACCGGACTGGTTGGGT 437
|||||||| ||||||||||||||||||||| |||||||| ||||||||
Sbjct 299 GAATCTTCAGTCTATATCATTAGACGTCGATAACCGGACCGGTTGGGT 346
> Ahg494545 jgi|Araly1|494545|fgenesh2_kg.8__361__AT5G44410.1
Length=1708
Score = 697 bits (377), Expect = 0.0
Identities = 849/1071 (79%), Gaps = 55/1071 (5%)
Strand=Plus/Plus
Query 467 ACCCAACCGTTGGCGTCGGAGGCCAGTTTAGCGGCGGAGGTTACGGCACGTTGCTTAGAA 526
||||||| || || ||||||| || || | || ||||| || || || ||| | ||||
Sbjct 609 ACCCAACGGTCGGTATCGGAGGGCAATTCGGAGGTGGAGGGTATGGAACATTGATGAGAA 668
Query 527 AATACGGTTTAGCAGCGGATAACATAATCGATGCACTTGTGGTTGA--CGCACGTGGGAG 584
||||||||||| | |||||||| |||| || |||| | | ||||| || || || ||
Sbjct 669 AATACGGTTTATCGGCGGATAATGTAATTGACGCACATATCGTTGATGCGAAC--GGAAG 726
Query 585 GATTCTTGACCGACAA-GCAATGGGTGAGGATTACTTTTGGGCGATTCGTGGAGGCGGTG 643
|||||||||||||| || ||||||||||||| ||||||||| ||||||||||| || |
Sbjct 727 CTTTCTTGACCGACAAGGC-ATGGGTGAGGATTTCTTTTGGGCTATTCGTGGAGGGGGAG 785
Query 644 GATCGAGCTTTGGTGTTGTACTATCATGGAAGATTAAG-TTAG-TCGATGTTCCGTCCAC 701
||||||| ||| ||||||| ||||||||||||||| || || | |||||||||||||
Sbjct 786 GATCGAGTTTTTGTGTTGTCCTATCATGGAAGATT-AGATT-GCTCGATGTTCCGTCGGT 843
Query 702 GGTCACCGTGTTTAAAGTCCAG-AAACATCGGAGAAAGAGGCCGT-TAGGATCATCAACA 759
|| || || ||||| ||| | |||||||||| ||||| || || | |||||||||||
Sbjct 844 AGTAACGGTCTTTAACGTCGTGAAAACATCGGAAAAAGATGCTGTCT-CGATCATCAACA 902
Query 760 AGTGGCAGTATGTTGCGGATAAGGTCCCTGAA-GATCTTTTCATCAGCGCAACGTTGGAG 818
||||||||||| ||||||||||||| || || |||||||||||||| || | |||| ||
Sbjct 903 AGTGGCAGTATATTGCGGATAAGGTTCC-AAATGATCTTTTCATCAGAGCTATGTTGCAG 961
Query 819 AGATCAAA-CGAAAACTCTGTGCAGGCTTTGTTTACTGGACTCTATCTTGGTCCGGTGAA 877
| | ||| || | | | | | |||| |||| | ||||| ||||| |||||||| ||
Sbjct 962 A-AGGAAACCG--AGGT-T-T--ATGCTTCGTTTCCAGGACTTTATCTCGGTCCGGT-AA 1013
Query 878 -TAATCTCTTGGCCTTGATGGAAGAAAAGTTTCCAGAATTAGGTCTTGATATCCAAGACT 936
|||| || || || ||| |||| |||||||| |||||||||||||| || ||| |
Sbjct 1014 GCGATCTATTAGCGTTAATGAAAGATAAGTTTCCGGAATTAGGTCTTGAGATTGGAGATT 1073
Query 937 GCACAGAGATGAGTTGGGTTGAATCTGCACTCTGGTT-TGCTGATTTCTCTAAAGGAGAG 995
| ||||| || || ||| || || | ||| ||| | ||| ||| | ||||| | |
Sbjct 1074 G--TAGAGA--AG-TGAATTGGAT-TG-AGTCT-GTTCT-CTGGTTTGT-TAAAGAACAA 1123
Query 996 TCTCTTGG-TGTTCTCGCGAATCGGAAGCGTACATCTC-TG-TCTTTCAAGGGTAAAGAC 1052
|| ||| ||| | ||| || ||||| | | ||| | ||||||||||| |||||
Sbjct 1124 TC-AATGGAAACTCTTGTGAAACGAAAGCG-A-ACCTCGAGATCTTTCAAGGGAAAAGAT 1180
Query 1053 GACTTTGTCCAAGAACCGATACCCGAGGCTGCAATTCAAG-CGCTATGGAGGCGATTAGA 1111
|| |||||| ||||||||||||| | | || |||| | || |||| ||||| ||
Sbjct 1181 GATTTTGTCGAAGAACCGATACCTAAACCCGCGATTC-GGTATCTTTGGAAACGATTCGA 1239
Query 1112 GGCGCCTGAGGCTCGGCTTGCAAAGGTTATATTAACTCCATATGGTGGAAAAATGAGTGA 1171
|||||| |||||||||||||||||| | | | | ||||||| |||||| |||||||||||
Sbjct 1240 GGCGCCCGAGGCTCGGCTTGCAAAGATCACACTCACTCCATTTGGTGGCAAAATGAGTGA 1299
Query 1172 AATCGCAGAGCACGAAACGTCATTCCCACATCGAAAAGGGAATCTCTATGAGATTCAGTA 1231
||| || || | ||||| ||||||||||| || | |||||||| ||||||||||| ||
Sbjct 1300 AATAGCGGAATATGAAACACCATTCCCACATAGAGAGGGGAATCTTTATGAGATTCAATA 1359
Query 1232 TCTGGCTTTTTGGAGAGAAGAGGAAGACAAGAACAAGATGGAA-ACAGAGAAGTATCTGA 1290
| |||||| |||||| ||||| ||||| |||||||||| || |||||||||||| |||
Sbjct 1360 TTTGGCTTATTGGAGTGAAGAAGAAGATAAGAACAAGA-CTAATACAGAGAAGTATTTGA 1418
Query 1291 AATGGGTTGAGAGCGTTTA-CAATCTTATGACTCCTTATGTTTCGAAATCTCCAAGAAGA 1349
|||||| ||||| || || ||| |||||||||||||||||||||||||||||||||||
Sbjct 1419 GATGGGTGGAGAGTGTATATGAAT-TTATGACTCCTTATGTTTCGAAATCTCCAAGAAGA 1477
Query 1350 GCTTATGTCAACTTCATG-GATC-TTGATTTGGGAATGTATCTTGGAAAGGA-A-GA-GA 1404
|||||||| ||||| | | || | |||||||||||||||||||||| | | | | || ||
Sbjct 1478 GCTTATGTTAACTTTA-GAGA-CATTGATTTGGGAATGTATCTTGGGATGAACATGAAGA 1535
Query 1405 CAAAGTACGAGGAAGGGAAGAGTTGGGGAGTGAAGTATTTCAAGAACAATTTCGAGAGAT 1464
||||||||||||||| |||| ||||||||||||||||||||||||||| ||||| ||||
Sbjct 1536 CAAAGTACGAGGAAGCAAAGATTTGGGGAGTGAAGTATTTCAAGAACAACTTCGATAGAT 1595
Query 1465 TGGTGAGAGTGAAAACAAGCGTTGATCCAACAGATTTCTTCTGTGATGAAC 1515
|||||||||||||||||| |||||||||| |||||||| ||||||||||
Sbjct 1596 TGGTGAGAGTGAAAACAAATGTTGATCCAATGGATTTCTTTTGTGATGAAC 1646
> Ahg951814 jgi|Araly1|951814|scaffold_18400001.1
Length=278
Score = 348 bits (188), Expect = 8e-95
Identities = 204/212 (96%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 1304 CGTTTACAATCTTATGACTCCTTATGTTTCGAAATCTCCAAGAAGAGCTTATGTCAACTT 1363
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 8 CGTTTACAATCTTATGACTCCTTATGTTTCGAAATCTCCAAGAGGAGCTTATGTCAATTT 67
Query 1364 CATGGATCTTGATTTGGGAATGTATCTTGGAAAGGAAGAGACAAAGTACGAGGAAGGGAA 1423
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 68 CATGGATCTTGATTTGGGAATGTATCTTGGAAAGGAGGAGACAAAGTACGAGGAAGGAAA 127
Query 1424 GAGTTGGGGAGTGAAGTATTTCAAGAACAATTTCGAGAGATTGGTGAGAGTGAAAACAAG 1483
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 128 GAGTTGGGGAGTGAAGTATTTCAAGAACAATTTCGAGAGATTGGTGAGGGTGAAAACGAG 187
Query 1484 CGTTGATCCAACAGATTTCTTCTGTGATGAAC 1515
||||||||||||||||||||||| |||||||
Sbjct 188 TGTTGATCCAACAGATTTCTTCTGCGATGAAC 219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56716374805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5