BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44430.1
Length=453
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476731 jgi|Araly1|476731|fgenesh2_kg.2__1861__AT1G75830.1 398 2e-110
Ahg926970 jgi|Araly1|926970|scaffold_202531.1 331 2e-90
Ahg924338 jgi|Araly1|924338|scaffold_105619.1 281 2e-75
Ahg330953 jgi|Araly1|330953|fgenesh1_pm.C_scaffold_8000296 172 2e-42
> Ahg476731 jgi|Araly1|476731|fgenesh2_kg.2__1861__AT1G75830.1
Length=420
Score = 398 bits (215), Expect = 2e-110
Identities = 312/357 (87%), Gaps = 14/357 (4%)
Strand=Plus/Plus
Query 59 TAGTCATGGCTAAGTCTGCTACCATCATCA-CCTTCCTTTTCGCTGCTCTTGTTCTCTTT 117
|||||||||||||||||||||||||| | | |||| ||||||||||||||||| |||||
Sbjct 49 TAGTCATGGCTAAGTCTGCTACCATCGTTACCCTT-TTTTTCGCTGCTCTTGTTTTCTTT 107
Query 118 GCTGCTTTTGAAGCACCAACAATGGTGGAAGCACAGAAGTTGTGCGAGAAGCCAAGTGGG 177
|||||| ||||||| ||||||||||||||||||||||| || ||||||| |||||||||
Sbjct 108 GCTGCTCTTGAAGCGCCAACAATGGTGGAAGCACAGAAATTATGCGAGAGGCCAAGTGGA 167
Query 178 ACATGGTCAGGCGTTTGCGGAAACAGTAATGCATGCAAGAATCAGTGCATTA-ACCTTGA 236
||||||||||| ||||||||||||| |||||||||||||||||||||||||| | |||||
Sbjct 168 ACATGGTCAGGAGTTTGCGGAAACAATAATGCATGCAAGAATCAGTGCATTAGA-CTTGA 226
Query 237 GGGAGCAAAACATGGATCTTGCAACTATGTCTTCCCAGCTCACAAATGTATCTGTTACGT 296
| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 227 GAAAGCACGACATGGATCTTGCAACTATGTCTTCCCAGCTCACAAATGTATCTGCTACTT 286
Query 297 CCCATGTTAATCTACCAAAAA-TCTTTGGTGCTTGATCGTGTGTGTA-TTTTACTTTAAA 354
||||||||||||||||||||| |||| | ||||| || | ||||| ||||| | |||
Sbjct 287 CCCATGTTAATCTACCAAAAACTCTTAG-TGCTTAATTATAAGTGTAATTTTA-TA-AAA 343
Query 355 TAAGTCGGTGTCACTCTATGAGTGACT-TTATGACATGCAT-A-T-ATGTTTATGTT 407
||||| |||||||||||| |||| | |||||||||| | | | |||||||||||
Sbjct 344 TAAGTATGTGTCACTCTATAAGTGG-TATTATGACATGTACCAGTTATGTTTATGTT 399
> Ahg926970 jgi|Araly1|926970|scaffold_202531.1
Length=283
Score = 331 bits (179), Expect = 2e-90
Identities = 247/278 (89%), Gaps = 12/278 (4%)
Strand=Plus/Plus
Query 52 AGT-ATAAT-AGTCATGGCTAAGTCTGCTACCATCATCA-CCTTCCTTTTCGCTGCTCTT 108
||| ||||| | |||||||||||| |||| ||||||||| |||| | ||||||||||||
Sbjct 8 AGTAATAATCA-TCATGGCTAAGTTTGCTTCCATCATCACCCTT-ATCTTCGCTGCTCTT 65
Query 109 GTTCTCTTTGCTGCTTTTGAAGCACCAACAA-TGGTGGAAGCACAGAAGTTGTGCGAGAA 167
|||||||||||||| |||||||||||||||| | ||||||||||||| ||||||||||||
Sbjct 66 GTTCTCTTTGCTGCATTTGAAGCACCAACAACT-GTGGAAGCACAGAGGTTGTGCGAGAA 124
Query 168 GCCAAGTGGGACATGGTCAGGCGTTTGCGGAAACAGTAATGCATGCAAGAA-TCAGTGCA 226
||||||||||||||||||||| ||||||||||||| | || |||| ||| ||||||||
Sbjct 125 GCCAAGTGGGACATGGTCAGGAGTTTGCGGAAACAATGGCGCGTGCA-GAAATCAGTGCA 183
Query 227 TTA-ACCTTGAGGGAGCAAAACATGGATCTTGCAACTATGTCTTCCCAGCTCACAAATGT 285
||| || ||||||||||| |||||||||||||||||| |||||||||||||| || |||
Sbjct 184 TTAGAC-TTGAGGGAGCACGACATGGATCTTGCAACTACGTCTTCCCAGCTCATAAGTGT 242
Query 286 ATCTGTTACGTCCCATGTTAATCTACC-AAAAATCTTT 322
||||||||| |||||||||||| |||| ||||||||||
Sbjct 243 ATCTGTTACTTCCCATGTTAATTTACCTAAAAATCTTT 280
> Ahg924338 jgi|Araly1|924338|scaffold_105619.1
Length=290
Score = 281 bits (152), Expect = 2e-75
Identities = 237/277 (86%), Gaps = 10/277 (4%)
Strand=Plus/Plus
Query 52 AGTATAATAGTCATGGCTAAGTC-TGCTACCATCATCA-C-C--TTCCTTTTCGCTGCTC 106
||| || |||||||||||||| | |||||||||||||| | | || | ||||||||||
Sbjct 12 AGT-TATTAGTCATGGCTAAG-CTTGCTACCATCATCATCACGGTT-ATCTTCGCTGCTC 68
Query 107 TTGTTCTCTTTGCTGCTTTTGAAGCACCAACAATGGTGGAAGCACAGAAGTTGTGCGAGA 166
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 69 TTGTTCTCTTTGCTGCTTTTGAAGCACCAACAATGGTGGAAGCACAAAAGTTGTGCGAGA 128
Query 167 AGCCAAGTGGGACATGGTCAGGCGTTTGCGGAAACAGTAATGCATGCAAGAATCAGTGCA 226
|| ||||| ||| || || || ||||||||||||||||| |||||||||| |||||
Sbjct 129 GGCTTAGTGGTACAACGTTGGGAGTCTGCGGAAACAGTAATGCGTGCAAGAATCGGTGCA 188
Query 227 TTA-ACCTTGAGGGAGCAAAACATGGATCTTGCAACTATGTCTTCCCAGCTCACAAATGT 285
|| || | ||||||||| |||||| |||||||||| | |||||||| ||||| ||||
Sbjct 189 TTCTAC-TGGAGGGAGCACGACATGGTTCTTGCAACTTTATCTTCCCATATCACAGATGT 247
Query 286 ATCTGTTACGTCCCATGTTAATCTACCAAAAATCTTT 322
|||||||| |||||||||||| ||||||||| ||||
Sbjct 248 GTCTGTTACTTCCCATGTTAATTTACCAAAAAACTTT 284
> Ahg330953 jgi|Araly1|330953|fgenesh1_pm.C_scaffold_8000296
Length=216
Score = 172 bits (93), Expect = 2e-42
Identities = 110/118 (93%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 191 TTTGCG-GAA-ACAGTAATGCATGCAAGAATCAGTGCATTAACCTTGAGGGAGCAAAACA 248
|||||| ||| || |||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 99 TTTGCGAGAAGCCAATAATGCGTGCAAGAATCAGTGCATTAACCTTGAGGGGGCAAAACA 158
Query 249 TGGATCTTGCAACTATGTCTTCCCAGCTCACAAATGTATCTGTTACGTCCCATGTTAA 306
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 159 TGGATCTTGCAACTATGTCTTCCCAGCTCACAAGTGTATCTGTTACTTCCCATGTTAA 216
Score = 139 bits (75), Expect = 2e-32
Identities = 102/114 (89%), Gaps = 6/114 (5%)
Strand=Plus/Plus
Query 64 ATGGCTAAGTCTGCTACCATCATCA-CCTTCCTTTTCGCTGCTCTTGTTCTCTTTGCTGC 122
|||||||||| |||| ||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 1 ATGGCTAAGTTTGCTTCCATCATCACCCTT-ATCTTCGCTGCTCTTGTTCTCTTTGCTGC 59
Query 123 TTTTG---AA-GCACCAACAATGGTGGAAGCACAGAAGTTGTGCGAGAAGCCAA 172
||||| || ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 60 TTTTGGTGAAAGCACCAACAATGGTGGAAGCACAAAAGTTTTGCGAGAAGCCAA 113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16368747681
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5