BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44440.1
Length=1756
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948675 jgi|Araly1|948675|scaffold_800562.1 2028 0.0
Ahg948672 jgi|Araly1|948672|scaffold_800559.1 1567 0.0
Ahg494545 jgi|Araly1|494545|fgenesh2_kg.8__361__AT5G44410.1 985 0.0
Ahg946113 jgi|Araly1|946113|scaffold_702342.1 407 2e-112
Ahg951814 jgi|Araly1|951814|scaffold_18400001.1 339 6e-92
> Ahg948675 jgi|Araly1|948675|scaffold_800562.1
Length=1653
Score = 2028 bits (1098), Expect = 0.0
Identities = 1444/1610 (90%), Gaps = 27/1610 (2%)
Strand=Plus/Plus
Query 4 CACCTATCTT--AGAAATGGAGTTCTCAAGCTTTTTG-TTTACTATTTTACTCTTTTCAC 60
|||||||||| | ||||||||||||||| || |||| | | || |||||||||||||||
Sbjct 6 CACCTATCTTACAAAAATGGAGTTCTCAAACTCTTTGCTCT-CTCTTTTACTCTTTTCAC 64
Query 61 TGAATATTTCTCCTCT-TGT-TTC-AG-CTCATGGCTC-CAACCATGAAGACTTTCTTAA 115
|| | |||||||||| | | || | ||| |||| ||||| ||||||||||||||
Sbjct 65 TGTGTGTTTCTCCTCTCTCTGCTCTTGTTTCA--GCTCATAACCACGAAGACTTTCTTAA 122
Query 116 GTGTCTTTCTTACCGAATGAACGACAACACCGTCGAACCCAAAGTCATACACACTTCCAA 175
|||||||||| || | || |||||||||||||||| | ||||||||||||||||||||||
Sbjct 123 GTGTCTTTCTCACAGGATAAACGACAACACCGTCGTATCCAAAGTCATACACACTTCCAA 182
Query 176 AGACTCTTCCtttttttCCATATTGGATTCTTCGATACAAAATCCAAGATTCTCGGTTTC 235
|| ||||||||||| |||||| ||||||||||| |||||||||||||||||||| | |||
Sbjct 183 AGGCTCTTCCTTTTGTTCCATCTTGGATTCTTCCATACAAAATCCAAGATTCTCTG-TTC 241
Query 236 C-GAAACACCTAAACCGGTCTCAATCATCACTCCCGTTAAAGCCAGTGACGTTCAAACTG 294
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 242 CTGAAACACCTAAACCGGTCTCAATCATCACTCCGGTTAAAGCCAGTGACGTTCAAACCG 301
Query 295 TGATCAGATGCGCACAGCTGCATGGAATTCATGTAAGGACTCGGAGCGCCGGTCACTGCT 354
| ||||||||||||| ||||||||| || |||||||||||||| |||||||||||| |||
Sbjct 302 TCATCAGATGCGCACGGCTGCATGGTATCCATGTAAGGACTCGCAGCGCCGGTCACGGCT 361
Query 355 ACGAAGGTCTCTCTTACATTGCGTACAACAAACCATTCGCT-GTCATCGAT-TTAAGGAA 412
||||||| |||||||| ||||||||||||||||||| | ||||||||| || |||||
Sbjct 362 GGGAAGGTCAATCTTACATCGCGTACAACAAACCATTCG-TCGTCATCGATCTT-AGGAA 419
Query 413 TCTTCGGTCTATATCATTAGACGTTGATAACCGGACAGGTTGGGTCCAAACCGGAGCAAC 472
||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||
Sbjct 420 TCTTCGGTCTATATCATTAAACGTTGATGACCGGACTGGTTGGGTCCAAACCGGAGCAAC 479
Query 473 GGCTGGGGAATTGTA-TTATGAGATTGGGAAAACCACCAAATCTCTTGCTTTCCCGGCCG 531
| |||| || || || || ||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GACTGGAGAGTTATACTT-TGAGATTGGGAAAACCACCAAATCTCTTGCTTTCCCGGCCA 538
Query 532 GTATTCACCCAACCGTTGGTGTAGGCGGACAATTTAGCGGTGGTGGTTATGGCACATTGC 591
|||| ||||||||||| || || || ||||| |||||||| || ||||| ||||| ||||
Sbjct 539 GTATCCACCCAACCGTCGGAGTCGGTGGACAGTTTAGCGGCGGAGGTTACGGCACGTTGC 598
Query 592 TAAGGAAATACGGTTTAGCTGCGGATAACATAATCGATGCACTTGTGGTTGACGCGAGTG 651
| || |||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 599 TTAGAAAATACGGTTTAGCGGCGGATAACATAATCGATGCACTTGTGGTTGACGCGCGTG 658
Query 652 GGAGGATTCTTGACCGACAAGCAATGGGCGAGGATTACTTTTGGGCTATTCGTGGAGGGG 711
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 659 GGAGGATTCTTGACCGACAAGCAATGGGTGAGGATTACTTTTGGGCGATTCGTGGAGGTG 718
Query 712 GCGGATCAAGCTTCGGTGTTATACTATCGTGGAAGGTTAAATTAGTCGATGTTCCATCCA 771
||||||||||||| |||||| |||||||||||||| |||| |||||||||||||| ||||
Sbjct 719 GCGGATCAAGCTTTGGTGTTGTACTATCGTGGAAGATTAAGTTAGTCGATGTTCCGTCCA 778
Query 772 CAATTACCGTGTTTAAAGTCCAGAAAACATCGAAGAAAGAGGCCGTTAGGATCATCAAGA 831
| | ||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
Sbjct 779 CGGTCACCGTGTTTAAAGTCCAGAAAACATCGGAGAAAGAGGCTGTTAGGATCATCAACA 838
Query 832 AATGGCAATATGCTGCAGATAAGGTTCCTGATGATCTTTTCATTAG-GACAACATTGGAG 890
| ||||| |||| ||||| |||||||||| ||||||||||||| || | |||| ||||||
Sbjct 839 AGTGGCAGTATGTTGCAGCTAAGGTTCCTAATGATCTTTTCATCAGCG-CAACGTTGGAG 897
Query 891 AGATCAAACAAGAACGCAGTACACGCTTTGTTCACTGGACTATATATTGGTCCGGTGAAC 950
|||||| |||| ||| ||| ||||||||||| || ||||| ||| ||||||||||||||
Sbjct 898 AGATCAGACAAAAACTTAGTGCACGCTTTGTTTACGGGACTTTATCTTGGTCCGGTGAAC 957
Query 951 AATCTATTGGCGTTGATGGAAGAAAAGTTTCCGGAACTAGGTCTTGAGAAAGAAGGTTGT 1010
|||| ||||| ||||||||||||||||||||||| || |||||||| |||| |||
Sbjct 958 GATCTGTTGGCCTTGATGGAAGAAAAGTTTCCGGAGTTAAATCTTGAGATGGAAGATTG- 1016
Query 1011 GA-AGAGATGAGTTGGATTGAGTCTGTACTCTGGTTTGCTGATTTCCCTAAAGGAGAATC 1069
| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1017 CACAGAGATGAGTTGGGTTGAGTCTGTACTCTGGTTTGCTGATTTCCCAAAAGGAGAGTC 1076
Query 1070 TCTTGGTGTTCTCACGAATCGTG-AGCGTACATCTCTATCTTTCAAAGGCAAAGATGATT 1128
|||||||||||| ||||||| | ||||||||||||| |||||||| || ||||||||||
Sbjct 1077 GCTTGGTGTTCTCGCGAATCG-GAAGCGTACATCTCTGTCTTTCAAGGGTAAAGATGATT 1135
Query 1129 TTGTCCAAGAACCGATACCCGAGGCTGCAATTCAAGAGATATGGAGGCGATTAGAAGCCC 1188
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
Sbjct 1136 TTGTCCAAGAACCGATACCCGAGGCTGCAATTCAAGAGCTATGGAGGCGATTAGAGGCGC 1195
Query 1189 CCGAGGCTCGGCTTGGAAAGATCATATTAACTCCATTTGGTGGGAAAATGAGTGAAATGG 1248
| ||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||| |
Sbjct 1196 CTGAGGCTCGGCTTGCAAAGGTCATATTGACTCCATTTGGTGGGAAAATGAGTGAAATCG 1255
Query 1249 CAGAGTACGAAACACCATTCCCACATCGAGGAGGGAATCTCTATGAGATTCAGTATGTGG 1308
||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1256 CAGAGCACGAAACACCGTTCCCACATCGAGAAGGGAATCTCTATGAGATTCAGTATTTGG 1315
Query 1309 CTTACTGGAGAGAAGAGGAAGACAAGAACAAGACGGAGACAGATAAATATCTGAAATGGG 1368
||| |||||||||||||||||||||||||||| ||| ||||| || |||||||||||||
Sbjct 1316 CTTTTTGGAGAGAAGAGGAAGACAAGAACAAGATGGAAACAGAGAAGTATCTGAAATGGG 1375
Query 1369 TCGATAGCGTTTACGAAT-TTATGACTCCATATGTTTCGAAATCTCCAAGAGGAGCTTAT 1427
|||| ||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1376 TCGAGAGCGTTTAC-AATCTTATGACTCCTTATGTTTCGAAATCTCCAAGAGGAGCTTAT 1434
Query 1428 GTCAATTTCAAGGATATGGATTTGGGTATGTATCTTGGAAAGAAGAAGACAAAGTACGAG 1487
|||||||||| |||| | |||||||| ||||||||||||||| || ||||||||||||||
Sbjct 1435 GTCAATTTCATGGATCTTGATTTGGGAATGTATCTTGGAAAGGAGGAGACAAAGTACGAG 1494
Query 1488 GAAGGAAAGAGTTGGGGAGTGAAGTATTTCAAGAACAATTTCGAGAGATTGGTGAGAGTG 1547
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1495 GAAGGAAAGAGTTGGGGAGTGAAGTATTTCAAGAACAATTTCGAGAGATTGGTGAGGGTG 1554
Query 1548 AAGACTAGGGTTGATCCAACAGATTTCTTCTGCGATGAACAGAGCATTCC 1597
|| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AAAACGAGTGTTGATCCAACAGATTTCTTCTGCGATGAACAGAGCATTCC 1604
> Ahg948672 jgi|Araly1|948672|scaffold_800559.1
Length=1474
Score = 1567 bits (848), Expect = 0.0
Identities = 976/1038 (94%), Gaps = 8/1038 (1%)
Strand=Plus/Plus
Query 609 GCTGCGGATAACATAATCGATGCACTTGTGGTTGACGCGAGTGGGAGGATTCTTGACCGA 668
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 438 GCTGCGGATAACATAATCGATGCACTTGTGGTCGATGCGAGTGGGAGGATTCTTGACCGA 497
Query 669 CAAGCAATGGGCGAGGA-T--TACTTTTGGGCTATTCGTGGAGGGGGCGGATCAAGCTTC 725
||||||||||||||||| | ||||||||||| ||| ||||||||||||||||||||||
Sbjct 498 CAAGCAATGGGCGAGGAGTACTACTTTTGGGCGATTTGTGGAGGGGGCGGATCAAGCTTT 557
Query 726 GGTGTTATACTATCGTGGAAGGTTAAATTAGTCGATGTTCCATCCACAATTACCGTGTTT 785
|| ||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||
Sbjct 558 GGCATTATACTATCGTGGAAGATTAAATTAGTCGATGTTCCATCTACAATAACCGTGTTT 617
Query 786 AAAGTCCAGAAAACATCGAAGAAAGAGGCCGTTAGGATCATCAAGAAATGGCAATATGCT 845
|||||| ||| |||||| |||||||||||||||||||||||||| ||||||||||||| |
Sbjct 618 AAAGTCAAGAGAACATCAAAGAAAGAGGCCGTTAGGATCATCAACAAATGGCAATATGTT 677
Query 846 GCAGATAAGGTTCCTGATGATCTTTTCATTAGGACAACATTGGAGAGATCAAACAAGAAC 905
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 678 GCAGATAAGGTTCCTGATGATCTTTTCATTAGGACAACATTGGAGAGATCAAACAAAAAC 737
Query 906 GCAGTACACGCTTTGTTCACTGGACTATATATTGGTCCGGTGAACAATCTATTGGCGTTG 965
||||||||||||||||||||||| || ||| | ||||| | ||||||||| |||||||||
Sbjct 738 GCAGTACACGCTTTGTTCACTGGTCTTTATCTCGGTCCCGCGAACAATCTTTTGGCGTTG 797
Query 966 ATGGAAGAAAAGTTTCCGGAACTAGGTCTTGAGAAAGAAGGTTGTGA-AGAGATGAGTTG 1024
||||||||||||||||||||| |||||||||||||||| ||||| | ||||||||||||
Sbjct 798 ATGGAAGAAAAGTTTCCGGAATTAGGTCTTGAGAAAGATGGTTG-CACAGAGATGAGTTG 856
Query 1025 GATTGAGTCTGTACTCTGGTTTGCTGATTTCCCTAAAGGAGAATCTCTTG--G-TGTTCT 1081
| |||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||
Sbjct 857 GGTTGAGTCTGTACTCTGGTTTGCTGATTTCCATAAAGGAGAATCTCTTGATGATGTTCT 916
Query 1082 CACGAATCGTGAGCGTACATCTCTATCTTTCAAAGGCAAAGATGATTTTGTCCAAGAACC 1141
||||||||| ||||||||||||||||||| ||| || |||||||||||||||||||||||
Sbjct 917 CACGAATCGAGAGCGTACATCTCTATCTTACAAGGGAAAAGATGATTTTGTCCAAGAACC 976
Query 1142 GATACCCGAGGCTGCAATTCAAGAGATATGGAGGCGATTAGAAGCCCCCGAGGCTCGGCT 1201
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||
Sbjct 977 GATACCCGAGGCTGCAATTCAAGAGCTATGGAGGCGATTAGACGCCCCCGAGGCTCGACT 1036
Query 1202 TGGAAAGATCATATTAACTCCATTTGGTGGGAAAATGAGTGAAATGGCAGAGTACGAAAC 1261
|| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1037 TGCAAAGATCATATTAACTCCATTTGGTGGGAAAATGAGTGAAATTGCAGAGCACGAAAC 1096
Query 1262 ACCATTCCCACATCGAGGAGGGAATCTCTATGAGATTCAGTATGTGGCTTACTGGAGAGA 1321
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 ACTATTCCCACATCGAGAAGGGAATCTCTATGAGATTCAGTATGTGGCTTACTGGAGAGA 1156
Query 1322 AGAGGAAGACAAGAACAAGACGGAGACAGATAAATATCTGAAATGGGTCGATAGCGTTTA 1381
||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1157 AGAGGAAGACAAGAACATGACGGGGACAAATAAATATCTGAAATGGGTCGATAGCGTTTA 1216
Query 1382 CGAATTTATGACTCCATATGTTTCGAAATCTCCAAGAGGAGCTTATGTCAATTTCAAGGA 1441
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1217 CGAACTTATGACTCCATATGTTTCGAAATCTCCAAGAGGAGCTTATGTCAATTTCGTGGA 1276
Query 1442 TATGGATTTGGGTATGTATCTTGGAAAGAAGAAGACAAAGTACGAGGAAGGAAAGAGTTG 1501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 TATGGATTTGGGTATGTATCTTGGAAAGAAGAAGACAAAGTACGAGGAAGGAAAGAGTTG 1336
Query 1502 GGGAGTGAAGTATTTCAAGAACAATTTCGAGAGATTGGTGAGAGTGAAGACTAGGGTTGA 1561
|||||||||||| |||||||||||||||||||||||||||||||| || || || |||||
Sbjct 1337 GGGAGTGAAGTACTTCAAGAACAATTTCGAGAGATTGGTGAGAGTTAAAACGAGTGTTGA 1396
Query 1562 TCCAACAGATTTCTTCTGCGATGAACAGAGCATTCCTCTGGTGAACAAAGTTACCTGAAG 1621
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||
Sbjct 1397 TCCAACAGATTTCTTCTGCGATGAACAGAGCATTCCCCTGCTGAACAAAGTTACCTAAAG 1456
Query 1622 ATATCATTTGAAGTTTTT 1639
||||||||||||||||||
Sbjct 1457 ATATCATTTGAAGTTTTT 1474
Score = 676 bits (366), Expect = 0.0
Identities = 410/432 (95%), Gaps = 0/432 (0%)
Strand=Plus/Plus
Query 113 TAAGTGTCTTTCTTACCGAATGAACGACAACACCGTCGAACCCAAAGTCATACACACTTC 172
|||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||
Sbjct 2 TAAGTGTCTTTCTTACCGGATGAACCACAACACCGTCGAATCCAAAGTCATACACACTTC 61
Query 173 CAAAGACTCTTCCtttttttCCATATTGGATTCTTCGATACAAAATCCAAGATTCTCGGT 232
|||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 62 CAAAGACTCTTCCTTTTTCTCCATTTTGGATTCTTCCATACAAAATCCAAGATTCTCGGT 121
Query 233 TTCCGAAACACCTAAACCGGTCTCAATCATCACTCCCGTTAAAGCCAGTGACGTTCAAAC 292
||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 122 TTCTGAAACACCTAAACCGGTCTCAATCATAACTCCGGTTAAAGCCAGTGACGTTCAAAC 181
Query 293 TGTGATCAGATGCGCACAGCTGCATGGAATTCATGTAAGGACTCGGAGCGCCGGTCACTG 352
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 182 CGTGATCAGATGCGCACGGTTGCATGGAATTCATGTAAGGACTCGGAGCGCCGGTCACTG 241
Query 353 CTACGAAGGTCTCTCTTACATTGCGTACAACAAACCATTCGCTGTCATCGATTTAAGGAA 412
|||||||||||| || ||||||||||||||||||||||||| |||||||||| || ||||
Sbjct 242 CTACGAAGGTCTATCGTACATTGCGTACAACAAACCATTCGTTGTCATCGATATACGGAA 301
Query 413 TCTTCGGTCTATATCATTAGACGTTGATAACCGGACAGGTTGGGTCCAAACCGGAGCAAC 472
||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 302 TCTTCAGTCTATATCATTAGACGTCGATAACCGGACCGGTTGGGTCCAAACCGGAGCAAC 361
Query 473 GGCTGGGGAATTGTATTATGAGATTGGGAAAACCACCAAATCTCTTGCTTTCCCGGCCGG 532
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 362 GGCTGGGGAATTGTATTATGAGATTGGGAAAACCCCCAAAACTCTTGCTTTCCCGGCCGG 421
Query 533 TATTCACCCAAC 544
||||||||||||
Sbjct 422 TATTCACCCAAC 433
> Ahg494545 jgi|Araly1|494545|fgenesh2_kg.8__361__AT5G44410.1
Length=1708
Score = 985 bits (533), Expect = 0.0
Identities = 1209/1529 (79%), Gaps = 72/1529 (5%)
Strand=Plus/Plus
Query 96 AACCATGAAGACTTTCTTAAGTGTCTTTCTTACCGAATGAACGACAACACCGTCGAACCC 155
||||| |||||||| || | |||||| || |||| || |||||| || |||| |
Sbjct 173 AACCACGAAGACTTCCTCAGGTGTCTCACTCACCGGATAAACGAC--CA----CGAA-TC 225
Query 156 AA-AGTCATACACACTTCCAAAGACT-CTTCCtttttttCCATATTGGATTCTTCGATAC 213
|| | |||||||||| || ||||| | |||||||||| || || ||| ||||||| ||||
Sbjct 226 AAGAATCATACACACATCAAAAGA-TCCTTCCTTTTTCTCAATCTTGAATTCTTCCATAC 284
Query 214 AAAATCCAAGATTCTCGGTTTC-CGAAACACCTAAACCGGTCTCAATCATCACTCCCGTT 272
|||||||||||||||| | ||| |||||||||||||||||||||||||||||||| |||
Sbjct 285 AAAATCCAAGATTCTCTG-TTCTTGAAACACCTAAACCGGTCTCAATCATCACTCCGGTT 343
Query 273 AAAGCCAGTGACGTTCAAACTGTGATCAGATGCGCACAGCTGCATGGAATTCATGTAAGG 332
|||||| | |||||| || ||| |||||||||| ||| || || || || | |||
Sbjct 344 CAAGCCACCAATGTTCAATCTACGATTAGATGCGCACGGCTTCACGGTATCCACATCAGG 403
Query 333 ACTCGGAGCGCCGGTCACTG-CTACGAAGGTCTCT-CTTACATTGCGTACAA-CAAACCA 389
||| |||| | ||||| || |||||| || || | ||||||| || | || || |||
Sbjct 404 ACTAGGAGTGGTGGTCA-TGACTACGAGGG-CTTTTCTTACATGGCCAA-AATCAGACCG 460
Query 390 TTCGCTGTCATCGATTTAAGGAATCTTCGGTCTATATCATTAGACGTTGATAACCGGACA 449
|||| |||| | ||||| || ||||| ||||||||| ||||||| ||||||||||||||
Sbjct 461 TTCGTTGTCCTTGATTTGAGAAATCTCCGGTCTATAACATTAGATGTTGATAACCGGACC 520
Query 450 GGTTGGGTCCAAACCGGAGCAACGGCTGGGGAATTGTATTATGAGATTGGGAAAACCACC 509
|||||||| || ||||| | || |||||||||||| ||| ||||||||||| | |
Sbjct 521 GGTTGGGTTCAGTCCGGAACTACAATTGGGGAATTGTACTATAAGATTGGGAAATTGAGC 580
Query 510 AAATCTCTT-GC-TTTCCCGGCCGGTAT-TCACCCAACCGTTGGTGTAGGCGGACAATTT 566
|||||| || || ||||| ||||||| | | ||||||| || ||| | || || |||||
Sbjct 581 AAATCT-TTAGCCTTTCC-GGCCGGTCTAT-ACCCAACGGTCGGTATCGGAGGGCAATTC 637
Query 567 AGCGGTGGTGGTTATGGCACATTGCTAAGGAAATACGGTTTAGCTGCGGATAACATAATC 626
| ||||| || ||||| |||||| | || |||||||||||| | |||||||| ||||
Sbjct 638 GGAGGTGGAGGGTATGGAACATTGATGAGAAAATACGGTTTATCGGCGGATAATGTAATT 697
Query 627 GATGCACTTGTGGTTGACGCGAGTGGGAGGATTCTTGACCGACAAG-CAATGGGCGAGGA 685
|| |||| | | ||||| |||| || || ||||||||||||||| || |||| |||||
Sbjct 698 GACGCACATATCGTTGATGCGAACGGAAGCTTTCTTGACCGACAAGGCA-TGGGTGAGGA 756
Query 686 TTACTTTTGGGCTATTCGTGGAGGGGGCGGATCAAGCTTCGGTGTTATACTATCGTGGAA 745
|| |||||||||||||||||||||||| ||||| || || ||||| | ||||| |||||
Sbjct 757 TTTCTTTTGGGCTATTCGTGGAGGGGGAGGATCGAGTTTTTGTGTTGTCCTATCATGGAA 816
Query 746 GGTTAAATTAG-TCGATGTTCCATCCACAATTACCGTGTTTAAAGTCCAGAAAACATCG- 803
| ||| ||| | |||||||||| || | | || || ||||| ||| ||||||||||
Sbjct 817 GATTAGATT-GCTCGATGTTCCGTCGGTAGTAACGGTCTTTAACGTCGTGAAAACATCGG 875
Query 804 AAGAAAGAGGCCGT-TAGGATCATCAAGAAATGGCAATATGCTGCAGATAAGGTTCCTGA 862
|| ||||| || || | | |||||||| || ||||| ||| ||| ||||||||||| |
Sbjct 876 AA-AAAGATGCTGTCTCG-ATCATCAACAAGTGGCAGTATATTGCGGATAAGGTTCCAAA 933
Query 863 TGATCTTTTCATTAG-GACAACATTGGAGAGATCAAACAAGAACGCAGTACACGCTTTGT 921
|||||||||||| || | | | ||| ||| | |||| || | || | |||| ||
Sbjct 934 TGATCTTTTCATCAGAG-CTATGTTGCAGA-AGGAAACC-GA--G--GTTTATGCTTCGT 986
Query 922 T-CACTGGACTATATATTGGTCCGGTGAA-CAATCTATTGGCGTTGATGGAAGAAAAGTT 979
| | | ||||| ||| | |||||||| || | ||||||| ||||| ||| |||| |||||
Sbjct 987 TTC-CAGGACTTTATCTCGGTCCGGT-AAGCGATCTATTAGCGTTAATGAAAGATAAGTT 1044
Query 980 TCCGGAACTAGGTCTTGAGAAAGAAGGTTGT-GAAGA-GATGAGTTGGATTGAGTCTGTA 1037
||||||| |||||||||||| | || |||| || || | ||| |||||||||||||||
Sbjct 1045 TCCGGAATTAGGTCTTGAGATTGGAGATTGTAGA-GAAG-TGAATTGGATTGAGTCTGTT 1102
Query 1038 CTCTGGTTTGCTGATTTCCC-TAAA-GGAGAATCTCTTGGTGTTCTCACGAATCGTGAGC 1095
|||||||||| | | | | || ||| || |||||| || ||||| |||
Sbjct 1103 CTCTGGTTTGTTAAAGAACAATCAATGGA-AA-CTCTTG-TGAA---ACGAA-----AGC 1151
Query 1096 GTACATCTCTATCTTTCAAAGGCAAAGATGATTTTGTCCAAGAACCGATACCCGAGGCTG 1155
| || || ||||||||| || ||||||||||||||| ||||||||||||| | | |
Sbjct 1152 GAACCTCGAGATCTTTCAAGGGAAAAGATGATTTTGTCGAAGAACCGATACCTAAACCCG 1211
Query 1156 CAATTCAAG-AGATATGGAGGCGATTAGAAGCCCCCGAGGCTCGGCTTGGAAAGATCATA 1214
| |||| | | | |||| ||||| || || |||||||||||||||| |||||||| |
Sbjct 1212 CGATTCG-GTATCTTTGGAAACGATTCGAGGCGCCCGAGGCTCGGCTTGCAAAGATCACA 1270
Query 1215 TTAACTCCATTTGGTGGGAAAATGAGTGAAATGGCAGAGTACGAAACACCATTCCCACAT 1274
| |||||||||||||| |||||||||||||| || || || ||||||||||||||||||
Sbjct 1271 CTCACTCCATTTGGTGGCAAAATGAGTGAAATAGCGGAATATGAAACACCATTCCCACAT 1330
Query 1275 CGAGGAGGG-AATCTCTATGAGATTCAGTATGTGGCTTACTGGAGAGAAGAGGAAGACAA 1333
||| |||| ||||| ||||||||||| ||| ||||||| ||||| ||||| ||||| ||
Sbjct 1331 AGAG-AGGGGAATCTTTATGAGATTCAATATTTGGCTTATTGGAGTGAAGAAGAAGATAA 1389
Query 1334 GAACAAGACGGAGACAGATAAATATCTGAAATGGGTCGATAGCGTTTACGAATTTATGAC 1393
||||||||| | ||||| || ||| ||| |||||| || || || || |||||||||||
Sbjct 1390 GAACAAGACTAATACAGAGAAGTATTTGAGATGGGTGGAGAGTGTATATGAATTTATGAC 1449
Query 1394 TCCATATGTTTCGAAATCTCCAAGAGGAGCTTATGTCAA-TTTCA-AGGATATGGATTTG 1451
||| ||||||||||||||||||||| |||||||||| || ||| | || | || ||||||
Sbjct 1450 TCCTTATGTTTCGAAATCTCCAAGAAGAGCTTATGTTAACTTT-AGAG-ACATTGATTTG 1507
Query 1452 GGTATGTATCTTGGAAAGAA---GAAGACAAAGTACGAGGAAGGAAAGAGTTGGGGAGTG 1508
|| ||||||||||| | ||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 1508 GGAATGTATCTTGGGATGAACATGAAGACAAAGTACGAGGAAGCAAAGATTTGGGGAGTG 1567
Query 1509 AAGTATTTCAAGAACAATTTCGAGAGATTGGTGAGAGTGAAGACTAGGGTTGATCCAACA 1568
||||||||||||||||| ||||| ||||||||||||||||| || | ||||||||||
Sbjct 1568 AAGTATTTCAAGAACAACTTCGATAGATTGGTGAGAGTGAAAACAAATGTTGATCCAATG 1627
Query 1569 GATTTCTTCTGCGATGAACAGAGCATTCC 1597
|||||||| || ||||||||||| |||||
Sbjct 1628 GATTTCTTTTGTGATGAACAGAGTATTCC 1656
> Ahg946113 jgi|Araly1|946113|scaffold_702342.1
Length=1644
Score = 407 bits (220), Expect = 2e-112
Identities = 1091/1495 (73%), Gaps = 126/1495 (8%)
Strand=Plus/Plus
Query 155 CAA-AGTCATACACACTTCCAAA-GACTCTTCCttt-ttttCCATATTGGATTCTTCGAT 211
||| |||||||||||| ||||| ||| ||| |||| | || | || | || || ||
Sbjct 180 CAAGAGTCATACACAC-ACCAAACGACACTT-CTTTCTCCTCTGTCTTAGCGTCATCAAT 237
Query 212 ACAAAATCCAAGATTCTCGGTTTCC-GAAACACCTAAACCGGTCTCAATCATCACTCCCG 270
||| |||||||||||||| | ||| || |||||||||||||| | |||| | ||||| |
Sbjct 238 ACAGAATCCAAGATTCTCTG-CTCCTGATACACCTAAACCGGTTTTAATCCTAACTCCGG 296
Query 271 TTAAAGCCAGT--GACGTTCAAACTGTGATCAGATGCGCACAGCTGCATGGA-ATTCATG 327
|| || || | || |||||| | | | | | |||||||| || | | || || ||
Sbjct 297 TTCAA-CC-TTCCGATGTTCAATCAGCGGTTAAATGCGCAC-GCCGGTTCGATATCCACA 353
Query 328 TAAGGACTCGGAGCGCCGGTCACTG-CTACGAAGGTCTCTCTTACATTGCGTACAACAAA 386
| || || || |||| || ||| | |||||||| ||||||||| || | | ||||
Sbjct 354 TCAGAACCCGAAGCGGAGGACAC-GATTACGAAGGACTCTCTTACGTTAC---CCGCAAA 409
Query 387 CCATTCGCT-GTCATCGATTTAAGGAATCTTCGGTCTAT-ATC-ATTAGACGTTGATAAC 443
|| |||| | || |||||||||| || || |||||||| | | ||| ||||| ||||||
Sbjct 410 CCCTTCG-TAATCCTCGATTTAAGAAACCTCCGGTCTATCA-CAATT-GACGTCGATAAC 466
Query 444 CGGACAGG-TTGGGTCCAAACCGGAGCAACGGCT-GGGGAATTGTATTAT--GAGATTGG 499
||| | || |||||||||||||||||| || | | || ||| |||| | || || ||
Sbjct 467 CGGTC-GGTTTGGGTCCAAACCGGAGCCAC-GATCGGTGAA--CTATTCTGCGAAATCGG 522
Query 500 -GAAAACCACCAAATCTCTT-GCTTTCCCGGCCGGTATTCACCCAACCGTTGGTGTAGGC 557
|||| | | || || || || ||||| |||||| || ||| ||||| || || ||
Sbjct 523 CAAAAAGAATCGAA-CT-TTAGCGTTCCCCGCCGGTGTTTGCCCCACCGTAGGCGTCGGA 580
Query 558 GGACAATTTAGCGGTGGTGGTTATGGCACATTGCTAAGGAAATACGGTTTAGCTGCGGAT 617
||||| || ||||| || || || || || || || || ||||||||||| || || |||
Sbjct 581 GGACACTTCAGCGGCGGAGGCTACGGTACTTTACTGAGAAAATACGGTTTGGCAGCCGAT 640
Query 618 AACATAATCGATGCACTTGTGGTTGACGCGA-GTGGGAGGATTCTTGACCGACAAGCA-A 675
|| | || || |||| ||| || || || | | |||||||||||||| ||| || | |
Sbjct 641 CACGTGATAGACGCACGTGTTGTCGATGC-ACGAGGGAGGATTCTTGAAAGACGAG-AGA 698
Query 676 TGGGCGAGGATTACTTTTGGGCTATTCGTGGAGGGGGCGGATCAAGCTTCGGTGTTATAC 735
|||| || |||| ||| ||||| ||||||||||| || ||||||||||| | ||| |||
Sbjct 699 TGGGTGAAGATTTCTTCTGGGCGATTCGTGGAGGTGGTGGATCAAGCTTTTGCGTTGTAC 758
Query 736 TATCGTGGAAGGTTAAATTAGTCGATGTTCCATCCACAATTACCGTGTTTAAAGTCCA-G 794
| || |||||| | ||| || |||||||||| ||| | || || || || || || |
Sbjct 759 TTTCATGGAAGATCGGTTTAATCAATGTTCCATCAACAGTAACTGTCTTCAACGT-CACG 817
Query 795 AAAACATCGAAGAA-AGAGGCCGTT-AGGATCA-TCAAGAAATGGCAATATGCTG-CAGA 850
||| || |||| |||| | || | ||||| || | ||||||| || || | ||
Sbjct 818 -AAA-TTCTCAGAACAGAGTTCTTTAAAGATCATTC-ATCGTTGGCAATTTG-TGTCTGA 873
Query 851 TAAG-GTTC-CTGATGATCTT-TTCATTAGGA-CAACATTGGAGAGATCAAACAAGAACG 906
| || | || |||||||| || |||| || || | ||| |||||| ||||||||
Sbjct 874 T-AGAG-TCTCTGATGAT-TTATTCA-TACGAGTTATGTTGCAGAGAT---ACAAGAACA 926
Query 907 CAGTAC-ACGCTTTG-TTCACTGGACTATATATTGGTCCGGTGAACAATCTATTGGCGTT 964
|| | | |||| | ||| | || | ||| ||||| |||| |||||||| ||| |
Sbjct 927 TGGTTCGA-GCTTCGTTTC-CGGGTTTGTATCTTGGTTCGGTTAACAATCTGTTGAAAAT 984
Query 965 GATGGAA--GAAAAGTTTCCGGAACTAGGTCTT-GAGAAAGAAGGTTGTGAAGAGATGAG 1021
| | || | || ||||| ||| | ||| || ||| |||| | |||| ||||||||||
Sbjct 985 GGT-AAACCGGGAA-TTTCCTGAATTGGGT-TTGGAGGAAGATGATTGTCAAGAGATGAG 1041
Query 1022 TTGGATTGAGTCTGTACTCTGGTTTGCTGATTTCCCTA-AAGGAGAATCTCTTGGTGTTC 1080
||||||||||||||| | ||||||||||| | || || |||| | | | |||||
Sbjct 1042 TTGGATTGAGTCTGTGGTTTGGTTTGCTGA-GT---TAGGAGAAGAACCGATCGATGTTC 1097
Query 1081 TCACG-AATCGTGA-GCGTA-CATC-TCTATCTTTCAAAGGC-AAAGATGATTTTGTCCA 1135
| | | || ||| | || | | || | || ||||| ||||| ||| ||||||||| ||
Sbjct 1098 TTA-GTAAACGT-ACACG-AGCGTCGT-TAGCTTTC-AAGGCTAAATCTGATTTTGTTCA 1152
Query 1136 AGAACCGA-TACCCGAGGCTGC-AATTCAAGAGATATGGAGGCGATTAG-AAGCCCCCGA 1192
|||||| | | || || | || | ||||| | | ||||| || || | ||| || ||
Sbjct 1153 AGAACC-ACTGCCTGAAACCGCGATTTCAA-ATTTGTGGAGACGGTT-GCAAGAACCGGA 1209
Query 1193 GGCTCG-GCTTGGAAAGATCATATTAACTCCATTTGGTGGGAAAATGAGTGAAATGGCAG 1251
|| | || || || | || || |||||||||||||| ||||||||||| || || |
Sbjct 1210 AGC-AGAGCATGCTCAGCTAATTTTCACTCCATTTGGTGGTAAAATGAGTGAGATTGCGG 1268
Query 1252 AGTACGAAACACCATTCCCACATCG-AGGAGGGAATCTCTAT-GAGATTCAGTATGTGGC 1309
| ||||| || ||||| || ||||| | | |||||| | | | |||||||||||| ||
Sbjct 1269 ATTACGAGACGCCATTTCCGCATCGAAAG-GGGAATATAT-TCGAGATTCAGTATCTGAA 1326
Query 1310 TTACTGGAGAGAAGAGGAAGACAAGAACAAGACGGAGACAGATAAATATCTGAAATGGGT 1369
||||| | | ||||| |||| | || | |||| || | ||| ||| ||||||
Sbjct 1327 TTACT---G-G-AGAGG-AGAC--G-TGAA-A--GAGA-AG-T--ATA--TGAGATGGGT 1368
Query 1370 CGATAGCGTTTACGAAT-TTATGACTCCA-TATGTTTCGAAATCTCCAAGAGGAGCTTAT 1427
|| || ||||||| || ||||| | | | ||| ||| ||||| ||||||||||||
Sbjct 1369 GGAGAGAGTTTACG-ATGATATGAGT-GAGTTTGTGGCGAGTTCTCCGAGAGGAGCTTAT 1426
Query 1428 GTCAATTTCAAG-GATATGGATTTGGGTATGTATCTTGGAAAG-AAGAAGACAAAGTACG 1485
| ||| || || ||| | |||||||| |||||| |||| | | |||| || |||||||
Sbjct 1427 ATAAATCTC-AGAGATCTTGATTTGGGGATGTATGTTGG-AGGTAAGAGGAGTAAGTACG 1484
Query 1486 AGGAAGGAAAGAGTTGGGGAGTGAAGTATTTCAA-GAACAATTTCGAGAGATTGGTGAGA 1544
||||||||||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct 1485 AGGAAGGAAAGAGTTGGGGAGTGAAGTATTTTAAAGGT-AATTTCGAGAGATTGGTGAGG 1543
Query 1545 GTGAAGACTAGGGTTGATCCAACAGATTTCTTCTGCGATGAACAGAGCATTCCTC 1599
|| ||||| || |||||||| ||||||||||| ||||||||||| |||||||
Sbjct 1544 GTTAAGACAAGTGTTGATCCTTTTGATTTCTTCTGTGATGAACAGAGTATTCCTC 1598
> Ahg951814 jgi|Araly1|951814|scaffold_18400001.1
Length=278
Score = 339 bits (183), Expect = 6e-92
Identities = 210/223 (94%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 1376 CGTTTACGAAT-TTATGACTCCATATGTTTCGAAATCTCCAAGAGGAGCTTATGTCAATT 1434
||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 8 CGTTTAC-AATCTTATGACTCCTTATGTTTCGAAATCTCCAAGAGGAGCTTATGTCAATT 66
Query 1435 TCAAGGATATGGATTTGGGTATGTATCTTGGAAAGAAGAAGACAAAGTACGAGGAAGGAA 1494
||| |||| | |||||||| ||||||||||||||| || |||||||||||||||||||||
Sbjct 67 TCATGGATCTTGATTTGGGAATGTATCTTGGAAAGGAGGAGACAAAGTACGAGGAAGGAA 126
Query 1495 AGAGTTGGGGAGTGAAGTATTTCAAGAACAATTTCGAGAGATTGGTGAGAGTGAAGACTA 1554
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 127 AGAGTTGGGGAGTGAAGTATTTCAAGAACAATTTCGAGAGATTGGTGAGGGTGAAAACGA 186
Query 1555 GGGTTGATCCAACAGATTTCTTCTGCGATGAACAGAGCATTCC 1597
| |||||||||||||||||||||||||||||||||||||||||
Sbjct 187 GTGTTGATCCAACAGATTTCTTCTGCGATGAACAGAGCATTCC 229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65896123850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5