BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44450.1
Length=1344
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494541 jgi|Araly1|494541|fgenesh2_kg.8__357__AT5G44450.1 1628 0.0
> Ahg494541 jgi|Araly1|494541|fgenesh2_kg.8__357__AT5G44450.1
Length=1152
Score = 1628 bits (881), Expect = 0.0
Identities = 1085/1177 (92%), Gaps = 40/1177 (3%)
Strand=Plus/Plus
Query 1 AAATGTCGTCTTCTCTTCACAGCCCATTCGTTTCCATTGGTCACTTCCATTGCCACCACA 60
||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1 AAATGTCGTTTTCTCTTCACAGCCCATTTGTTTCCATTGGTCACTTCCATTG---CCACA 57
Query 61 ACAACCAAAACCATATCTCGCCG-C--CG-C--CGTCGACGACGACGACACTTGCTTCAC 114
|| |||||||||||||||||||| | || | || ||||||||||||||||||||||||
Sbjct 58 ACCACCAAAACCATATCTCGCCGCCGTCGACGACGACGACGACGACGACACTTGCTTCAC 117
Query 115 CACCGTATCGCTATCAACAGAGGAA-AGAGATAAGAAGCGTGTTAACTCTTTCTTCT-AA 172
||||||||| |||||||||| ||| ||||| ||||||||| |||||||| |||||| ||
Sbjct 118 CACCGTATCTATATCAACAGA-GAAGAGAGACAAGAAGCGTTTTAACTCTCTCTTCTGAA 176
Query 173 TTCCATGGATATTTGTGGCGTTGATTCCGAAGGGAAAGAGTTTAATAGCGTACAAGAGAT 232
|| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 177 -TCTATGGAGATTTGTGGCGTTGATTCCGAAGGCAAAGAGTTTAACAGCGTACAAGAGAT 235
Query 233 GTGGAGAGAAGAAATT-G-G-AGAAGGAGACGAAACTaa-aaaaaCCCAATGGTATAGAG 288
|||||||||||||||| | | ||||||||||||||| || ||||||||||||||||||||
Sbjct 236 GTGGAGAGAAGAAATTGGAGAAGAAGGAGACGAAAC-AAGAAAAACCCAATGGTATAGAG 294
Query 289 ATGGTGTTTCTTATTGGGAAGGTGTTGAAGCTTCTGTTGATGGAGTATTAGGAGGATATG 348
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 295 ATGGTGTTTCTTATTGGGAAGGTGTTGAAGCATCTGTTGATGGAGTATTAGGAGGATATG 354
Query 349 GGCATGTGAATGATGCTGATATTATAGGAAGTGAGGTTTTTCTTAAGACTCTTTTGCAAG 408
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GTCATGTGAATGATGCTGATATTATAGGAAGTGAGGTTTTTCTTAAGACTCTTTTGCAAG 414
Query 409 AAAGATTAGTTAACAATGTTGGAGCTAATCAGCATTTAGTAGCTCTTGATTGTGGATCTG 468
||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 415 AAAGATTAGTTAA---TGTTGGACCTAATCAACATTTAGTAGCTCTTGATTGTGGATCTG 471
Query 469 GTATTGGAAGAATCACTAAAAATCTTCTGATTCGATACTTTAACGAGGTTGATCTTCTTG 528
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 472 GTATTGGAAGAATCACTAAGAATCTTCTGATTCGATATTTTAACGAGGTTGATCTTCTTG 531
Query 529 AGCCTGTAGCACAATTT-TTGGATGCAGCTCGTGAAAATTTGGCATCTGCAGGCTCTGAA 587
|||||||||| |||||| ||| ||||||| |||||||| ||||||||||| ||||| ||
Sbjct 532 AGCCTGTAGCGCAATTTCTTG-ATGCAGCACGTGAAAACTTGGCATCTGCGGGCTCCAAA 590
Query 588 ACGCACAAAGCTACTAACTTTTTCTGTGTACCTCTTCAGGAGTTTACTCCAGCTGCTGGG 647
||||||||||| || |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 591 ACGCACAAAGCAACGAACTTTTTTTGTGTTCCTCTTCAGGAGTTTACTCCAGCTGCTGGG 650
Query 648 AGGTATGATGTAATATGGGTTCAATGGTGCATTGGGCATCTCACGGACAATGACTTTGTT 707
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 AGGTACGATGTCATATGGGTTCAATGGTGCATTGGGCATCTCACGGACAATGACTTTGTT 710
Query 708 TCTTTCTTTAACCGCGCAAAGGGATACCTTAAACCTGGTGGGTTTTTCGTCGTGAAAGAG 767
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 711 TCTTTCTTTAACCGCGCAAAGGGATGCCTTAAACCTGGTGGGTTTTTCGTCGTGAAGGAG 770
Query 768 AATCTCGCTAAAAATGGATTTGTTTTGGATAAAGAGGATCATAGCATCACCAGATCGGAT 827
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 771 AATCTCGCTAAAAAAGGATTTGTTTTGGATAAAGAGGATCACAGCATCACCAGATCGGAT 830
Query 828 CCATACTTCAAACAGCTCTTTCGCCAATGTGGGTTACATCTCTATAGAACAAAGGATCAG 887
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 831 CCCTACTTCAAACAGCTCTTTCGCCAATGCGGGTTACATCTCTATAGAACAAAGGATCAG 890
Query 888 AAAGGTCTTCCACAAGAGTTATTTGCTGTAAAAATGTATGCGTTAACGGTTGACACACCA 947
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 891 AAAGGTCTTCCACAAGAGTTATTTGCCGTAAAAATGTATGCATTAACGGTTGACACACCA 950
Query 948 CCCAAAATCCACCGAACCAGGTCAAAAACT-CGAAGCAACAGACCGCAGATTATCAAATG 1006
|| ||||||||||||||||| ||||||||| | | ||||||||||||||||||||||||
Sbjct 951 CCGAAAATCCACCGAACCAGATCAAAAACTACTA-GCAACAGACCGCAGATTATCAAATA 1009
Query 1007 ACAAAGCTTCCGATTGGTTTACTACGGAGTCTTAATCGTTTGGTGTAAAGAGAGAAGCTA 1066
||||||||| | | |||||||||||| ||| || |||||||||||||||
Sbjct 1010 ACAAAGCTT---A--------C---GGAGTCTTAATCTTTTTGTTTAAAGAGAGAAGCTA 1055
Query 1067 CCAAAGGTGTTGTAAGATCTGGATCAAGGCTTGGCTGCTTC-ATTGTCACATGGTTTGGT 1125
|||||||| |||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct 1056 CCAAAGGTATTGTAAGATCTGGATCAAGGCTTGGCTGCTACCACTGTCACATGGTTTGGT 1115
Query 1126 TTTGTGCATGCTCGATTCTCCTCTCCTCCATCACCTT 1162
||||||| |||||||||||| |||| |||||||||||
Sbjct 1116 TTTGTGCCTGCTCGATTCTCTTCTCTTCCATCACCTT 1152
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284127523
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5