BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44460.1
Length=758
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948670 jgi|Araly1|948670|scaffold_800557.1 876 0.0
> Ahg948670 jgi|Araly1|948670|scaffold_800557.1
Length=589
Score = 876 bits (474), Expect = 0.0
Identities = 535/565 (95%), Gaps = 2/565 (0%)
Strand=Plus/Plus
Query 41 AACTAAGAAGAAGAGTAACAATGGAGATCAATAACGAGAAGAAGAAACTCTCAAGACAAT 100
||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1 AACTACGAAGAAGAGTAACAATGGAGTTCAATAACGAGAAGAAGAAACTCTCGAGACAAT 60
Query 101 CTTCTTCCTTCAGACTACGAAGTCCAAGTCTAAACGCTCTTCGTCTCCACCGAGTCTTT- 159
|||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 61 CTTCTTCCTTTAGACTCCGAAGTCCAAGTCTAAACGCTCTCCGTCTCCACCGAGT-TTTC 119
Query 160 GACCTATTCGACAAAAATAACGATGGATTCATAACCGTCGAAGAACTAAGTCAAGCACTC 219
||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 120 GACCTATTCGACAAAAACAACGACGGATTCATCACCGTCGAAGAACTAAGCCAAGCACTC 179
Query 220 TCAAGACTCGGTCTCGACGCTGATTTCTCCGATCTCAAGTCAACAGTTGATTCTTTCATC 279
||| ||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 180 TCACGACTCGGTCTCGAAGCTGATTTCTCCGATCTCAAATCAACGGTTGACTCTTTCATC 239
Query 280 AAACCGGACAAAACCGGACTCCGGTTCGATGACTTTGCTGCACTCCACAAAACCTTAGAC 339
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 AAACCAGACAAAACCGGACTCCGGTTCGATGACTTTGCTGCACTCCACAAAACCCTAGAC 299
Query 340 GAATCTTTCTTTGGAGGAGAAGGAAGTTGCTGTGATGGGTCTCCGGAATCAGATCTTGAA 399
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 300 GAATCTTTCTTTGGAGGAGAAGGAAGTTGCTGCGACGGGTCTCCGGAATCAGATCTTGAA 359
Query 400 GAAGCTTTTAATGTGTTCGATGAAGACGGAGATGGTTTTATCTCCGCTGTGGAATTGCAA 459
|||||||| ||||| || ||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 360 GAAGCTTTCAATGTATTTGATGAAGACGGAGATGGATTTATCTCCGCCGTGGAATTACAA 419
Query 460 AAGGTTTTGAAGAAGCTTGGATTACCTGAAGCAGGAGAGATTGAACAAGTGGAGAAGATG 519
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 420 AAGGTTTTGAAGAAGCTTGGACTACCTGAAGCAGGAGAGATTGAACAAGTGAAGAAGATG 479
Query 520 ATTGTCTCTGTTGATAGTAATCATGATGGTCGCGTTGACTTTTTCGAATTCAAGAACATG 579
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ATTGTATCTGTTGATAGTAATCATGATGGTCGCGTTGACTTTTTCGAATTCAAGAACATG 539
Query 580 ATGCAAACTGTTGTTGTTCCTTCTT 604
|||||||||||||||||||||||||
Sbjct 540 ATGCAAACTGTTGTTGTTCCTTCTT 564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27944098161
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5