BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44480.1
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915766 jgi|Araly1|915766|Al_scaffold_0008_517 1853 0.0
Ahg890118 jgi|Araly1|890118|Al_scaffold_0007_2104 1120 0.0
> Ahg915766 jgi|Araly1|915766|Al_scaffold_0008_517
Length=1239
Score = 1853 bits (1003), Expect = 0.0
Identities = 1121/1180 (95%), Gaps = 0/1180 (0%)
Strand=Plus/Plus
Query 132 AGAAATGGATTGCTTAGAACCCAAAACAAAGAACAATCTCACTGGAAAGCTTCTCTTAGT 191
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 60 AGAAATGGATTGCTTAGAACCGAAAACAAAGAACAATCTCACTGGAAAGCTTCTCTTAGT 119
Query 192 AGCTTCACTCTTAATTTTAGCCATTATTGTGATCAGTCAATCTTCAAGTTTCACATCTCC 251
|||||| ||| |||| |||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 120 AGCTTCTCTCCTAATCTTAGCCGTTATTGTGATCAGTCAATCTTCAAGTTTTACATCTCC 179
Query 252 AAGCGCGTTTTCTCAAAGAGAGGAAGGAGTGACTCATGTGTTAGTCACTGGTGGTGCTGG 311
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 180 AAGCGCGTTTTCTCGAAGAGAGGAAGGAGTGACTCATGTGCTAGTCACTGGTGGTGCTGG 239
Query 312 TTATATCGGGTCACATGCGGCTTTAAGACTTCTTAGAGATTCATACCGCGTAACCATTGT 371
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTATATCGGGTCACATGCTGCTTTAAGACTTCTTAGAGATTCATACCGCGTAACCATTGT 299
Query 372 GGACAATCTTTCGCGTGGAAATCTTGGTGCGGTTAAGACTTTACAGCAATTATTCCCGCA 431
|||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||
Sbjct 300 GGACAATCTTTCGCGTGGGAATCTTGGTGCGGTTAAGACTTTACAGCGATTATTTCCGCA 359
Query 432 GACAGGAAGACTTCAGTTCATTTATGCTGACTTAGGAGATCCCTTAGCGGTCGAGAAAAT 491
|| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 360 AACGGGAAGACTTCAATTCATTTATGCTGACTTAGGAGATCCCATAGCGGTCGAGAAAAT 419
Query 492 CTTCTCGGAGAATGCTTTTGACGCTGTAATGCATTTTGCTGCGGTAGCTTATGTCGGAGA 551
|||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 420 CTTCTCCGAGAACGCTTTTGACGCTGTGATGCATTTTGCTGCGGTAGCTTATGTTGGAGA 479
Query 552 AAGCACTCTTTATCCTCTAAAATATTACCATAACATTACATCAAACACGTTAGGAGTTCT 611
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 AAGCACTCTTTATCCTCTTAAATATTACCATAACATTACATCAAACACATTAGGAGTTCT 539
Query 612 TGAAGCTATGGCTAGACATAAAGTAAAGAAACTGATATATTCTAGCACTTGTGCTACATA 671
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 540 TGAAGCTATGGCTAGACATAAAGTGAAGAAATTGATATATTCTAGCACTTGTGCTACATA 599
Query 672 TGGAGAGCCTGAAAAAATGCCGATTACTGAAGACACTCCACAGGTACCGATTAATCCATA 731
||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||| || ||
Sbjct 600 TGGAGAGCCTGAAAAAATGCCGATTACCGAAGATACTCCGCAGGTCCCGATTAACCCTTA 659
Query 732 CGGAAAAGCTAAAAAGATGGCAGAGGATATGATCTTGGATTTCTCAAAGAACTCTGACAT 791
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 660 CGGAAAAGCCAAAAAGATGGCAGAGGATATGATCTTGGATTTCTCTAAGAACTCTGACAT 719
Query 792 GGCGGTTATGATCTTAAGATACTTCAATGTGATTGGTTCAGATCCAGGAGGTAGATTAGG 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GGCGGTTATGATCTTAAGATACTTCAATGTGATTGGTTCAGATCCAGGAGGTAGATTAGG 779
Query 852 AGAAGCGCCAAGACCCGAACTTCGTGAGCAAGGAAGGATTTCTGGTGCTTGTTTCGATGC 911
|||||| ||||||||||| ||||| ||||||||| |||||||||||||||||||||||||
Sbjct 780 AGAAGCTCCAAGACCCGAGCTTCGCGAGCAAGGACGGATTTCTGGTGCTTGTTTCGATGC 839
Query 912 AGCTCGTGGTTTCATTCCCGGACTACAAGTGAAAGGAACGGATTACAAAACATCGGACGG 971
|||||||||||||||||| ||| ||||||| |||||||| ||||||||||||||||| ||
Sbjct 840 AGCTCGTGGTTTCATTCCTGGATTACAAGTAAAAGGAACAGATTACAAAACATCGGATGG 899
Query 972 TACTTGCATTAGAGACTATATAGATGTTACTGACCTCGTGGATGCTCACGTGAAGGCTCT 1031
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 900 TACTTGCATTAGAGATTATATAGATGTTACTGATCTCGTGGATGCTCACGTGAAGGCTCT 959
Query 1032 CGAGAAAGCTCAGCCTCGAAAAGTCGGTATCTACAATGTTGGAACCGGAAAAGGGAGATC 1091
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 960 CGTGAAAGCTCAGCCTCGAAAAGTCGGTATCTACAATGTTGGAACCGGAAAAGGAAGATC 1019
Query 1092 GGTTAAAGAATTCGTTGAGGCATGTAAGAAGGCGACAGGAGTTGAGATCAAAGTAGATTT 1151
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1020 GGTTAAAGAATTCGTGGAGGCATGTAAGAAGGCAACAGGAGTTGAGATCAAAGTAGATTT 1079
Query 1152 CTTGCCTCGACGACCGGGAGATTACGCAGAGGTTTACAGTGATCCAACAAAGATTTTGAA 1211
|||||||||| ||||||||||||||||||| || || ||||| || ||||||||||||||
Sbjct 1080 CTTGCCTCGAAGACCGGGAGATTACGCAGAAGTGTATAGTGACCCGACAAAGATTTTGAA 1139
Query 1212 AGATTTGAATTGGACTGCTCGATTCACTAATCTTCAAGATAGTCTTCAAGTTGCTTGGAG 1271
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1140 AGAATTGAATTGGACTGCTCGATTTACTAATCTTCAAGATAGTCTTCAAGTTGCTTGGAG 1199
Query 1272 ATGGCAAAAAATTCATCCTCATGGATATAATTCTTATTAA 1311
|||||||| |||||||||||||||||| ||||||||||
Sbjct 1200 GTGGCAAAAGATTCATCCTCATGGATATGCTTCTTATTAA 1239
> Ahg890118 jgi|Araly1|890118|Al_scaffold_0007_2104
Length=1176
Score = 1120 bits (606), Expect = 0.0
Identities = 997/1187 (84%), Gaps = 22/1187 (2%)
Strand=Plus/Plus
Query 136 ATGGATTGCTTAGAACCCAAAACAAAGAACAATCTCACT-GGAAAGCTTCTCTTAGTAGC 194
||||| | ||| |||||||||| |||| |||| ||| | || |||||| |||| ||||
Sbjct 1 ATGGAATACTTGGAACCCAAAAGGAAGAGCAATGTCA-TGGGCAAGCTTATCTTGGTAG- 58
Query 195 TTCACTCTTAAT--TTTA-GCCATTATTGTGATC-AGTCAAT-CTTCAAGTTTCACATCT 249
|| |||||| | || | ||||||| || || || | || | | |||||||||||
Sbjct 59 TT-TCTCTTACTGCGCTATG-CATTATTATGCTCAAG-C-ATGCACCGAGTTTCACATCA 114
Query 250 CCAAGCGCGTTTTCTCAAAGAGAGGAAGGAGTGACTCATGTGTTAGTCACTGGTGGTGCT 309
|||| ||||||||||| || |||||||| |||||||||||||||||||||||||| |||
Sbjct 115 CCAACCGCGTTTTCTCGCAGCGAGGAAGGCGTGACTCATGTGTTAGTCACTGGTGGCGCT 174
Query 310 GGTTATATCGGGTCACATGCGGCTTTAAGACTTCTTAGAGATTCATACCGCGTAACCATT 369
|| |||||||| |||||||| || || || || || | |||||||||||| |||||||||
Sbjct 175 GGATATATCGGATCACATGCTGCATTGAGGCTGCTAAAAGATTCATACCGTGTAACCATT 234
Query 370 GTGGACAATCTTTCGCGTGGAAATCTTGGTGCGGTTAAGACTTTACAGCAATTATTCCC- 428
||||||||||||| || || |||||||| || || ||| ||||||| ||| |||||
Sbjct 235 CTGGACAATCTTTCTCGCGGGAATCTTGGCGCTGTCAAGGTTTTACAGGGATTGTTCCCA 294
Query 429 GCAGACAGGAAGACTTCAGTTCATTTATGCTGACTTAGGAGATCCCTTAGCGGTCGAGAA 488
| || | || || ||||| || ||||||||||||||||||||| || ||| ||||| ||
Sbjct 295 GAAG-CCGGGAGGCTTCAATTTATTTATGCTGACTTAGGAGATGCCAAAGCTGTCGATAA 353
Query 489 AATCTTCTCGGAGAATGCTTTTGACGCTGTAATGCATTTTGCTGCGGTAGCTTATGTCGG 548
||||||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| ||
Sbjct 354 AATCTTCTCAGAGAATGCGTTTGATGCTGTTATGCATTTTGCTGCGGTAGCATATGTTGG 413
Query 549 AGAAAGCACTCTTTATCCTCTAAAATATTACCATAACATTACATCAAACACGTTAGGAGT 608
||| |||||||| |||||||||| |||||||| ||||||||||||||||| |||| |||
Sbjct 414 AGAGAGCACTCTAGATCCTCTAAAGTATTACCACAACATTACATCAAACACATTAGTAGT 473
Query 609 TCTTGAAGCTATGGCTAGACATAAAGTAAAGAAACTGATATATTCTAGCACTTGTGCTAC 668
|||||||||| |||||||||||||||||||||| |||||||||| ||||| ||||| ||
Sbjct 474 TCTTGAAGCTGTGGCTAGACATAAAGTAAAGAAGTTGATATATTCAAGCACATGTGCCAC 533
Query 669 ATATGGAGAGCCTGAAAAAATGCCGATTACTGAAGACACTCCACAGGTACCGATTAATCC 728
|||||||| ||||| || ||||| ||| ||||| ||||||||||| |||||||| ||
Sbjct 534 TTATGGAGAACCTGACAAGATGCCTATTGTTGAAGTTACTCCACAGGTCCCGATTAACCC 593
Query 729 ATACGGAAAAGCTAAAAAGATGGCAGAGGATATGATCTTGGATTTCTC-AAAGAACTCTG 787
|| ||||||||||| |||||||| || ||||||||| |||||||||| ||| |||||||
Sbjct 594 TTATGGAAAAGCTAAGAAGATGGCTGAAGATATGATCCTGGATTTCTCTAAA-AACTCTG 652
Query 788 ACATGGCGGTTATGATCTTAAGATACTTCAATGTGATTGGTTCAGATCCAGGAGGTAGAT 847
||||||| || |||||| |||||||||| |||||||| |||||||| |||| |||||||
Sbjct 653 ACATGGCAGTCATGATCCTAAGATACTTTAATGTGATCGGTTCAGACCCAGAAGGTAGAC 712
Query 848 TAGGAGAAGCGCCAAGACCCGAACTTCGTGAGCAAGGAAGGATTTCTGGTGCTTGTTTCG 907
|||||||||| |||| ||| || || || || || || | ||||| |||||||||||||
Sbjct 713 TAGGAGAAGCTCCAAAACCAGAGCTACGCGAACATGGGCGAATTTCAGGTGCTTGTTTCG 772
Query 908 ATGCAGCTCGTGGTTTCATTCCCGGACTACAAGTGAAAGGAACGGATTACAAAACATCG- 966
||||||||||||| | ||||| || || || || |||||||| || ||||||||| |
Sbjct 773 ATGCAGCTCGTGGCGTGATTCCAGGCCTGCAGGTCAAAGGAACAGACTACAAAACA-GGA 831
Query 967 GACGGTACTTGCATTAGAGACTATATAGATGTTACTGACCTCGTGGATGCTCACGTGAAG 1026
|| || ||||| || | ||||| ||||| ||||||||||| || |||||||||||||||
Sbjct 832 GATGGAACTTGTGTTCGTGACTACATAGACGTTACTGACCTTGTAGATGCTCACGTGAAG 891
Query 1027 GCTCTCGAGAAAGCTCAGCCTCGAAAAGTCGGTATCTACAATGTTGGAACCGGAAAAGGG 1086
||||||||||||||| ||||| |||| ||||| ||||||||||| || |||||||||||
Sbjct 892 GCTCTCGAGAAAGCTAAGCCTAGAAATGTCGGAATCTACAATGTAGGTACCGGAAAAGGA 951
Query 1087 AGATCGGTTAAAGAATTCGTTGAGGCATGTAAGAAGGCGACAGGAGTTGAGATCAAAGTA 1146
|||||||| || || || || || ||||||||||| || |||||||| || |||||||||
Sbjct 952 AGATCGGTGAAGGAGTTTGTGGAAGCATGTAAGAAAGCAACAGGAGTAGATATCAAAGTA 1011
Query 1147 GATTTCTTGCCTCGACGACCGGGAGATTACGCAGAGGTTTACAGTGATCCAACAAAGATT 1206
||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1012 GATTTCTTGCCTCGAAGACCTGGAGATTACGCAGAGGTTTACAGTGATCCAGCAAAGATT 1071
Query 1207 TTGAAAGATTTGAATTGGACTGCTCGATT-CACTAATCTTCAAGATAGTCTTCAAGTTGC 1265
||| |||| |||||||| ||||||| || ||||||||||||||| |||||| |||||||
Sbjct 1072 CTGAGAGATCTGAATTGGTCTGCTCG-TTACACTAATCTTCAAGAAAGTCTTGAAGTTGC 1130
Query 1266 TTGGA-GATGGCAAAAAATTCATCCTCATGGATATAATTCTTATTAA 1311
||||| | |||||||| | |||||| ||||||||| ||||| ||||
Sbjct 1131 TTGGAAG-TGGCAAAAGACTCATCCCCATGGATATGCTTCTTCTTAA 1176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49026071262
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5