BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44490.1
Length=1368
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915765 jgi|Araly1|915765|Al_scaffold_0008_516 481 7e-135
> Ahg915765 jgi|Araly1|915765|Al_scaffold_0008_516
Length=780
Score = 481 bits (260), Expect = 7e-135
Identities = 321/350 (92%), Gaps = 6/350 (2%)
Strand=Plus/Plus
Query 253 ATAGAGAATTCATGTTTGCACAAGCTTAAGCTAAGTATTCGGAAG-GAGCATGAGAATGA 311
||||||||||||||||||||||||||||||||||||||||| ||| || | ||||||||
Sbjct 1 ATAGAGAATTCATGTTTGCACAAGCTTAAGCTAAGTATTCGTAAGAAAG-AAGAGAATGA 59
Query 312 TAACAAGTCTTGTGTCACGCGATGGATTGGTTTTGTGGCTACCCA-TAAACTTAAGCATC 370
||||||||||||||||||||| ||||| | ||||||||||| | ||||||| ||||||
Sbjct 60 TAACAAGTCTTGTGTCACGCGTTGGATAGATTTTGTGGCTA-AGAGTAAACTTCAGCATC 118
Query 371 TTGATGTTGAGTGTCTTCTTTGGAAGAAAAAGTGTTTGGAAGTGATGCCATTAACCCTCT 430
||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||
Sbjct 119 TTGATGTTGAGTGTCTTCTTTGGAAGAGTGAGAGTTTGGAAGTGATGCCATTAAGCCTCT 178
Query 431 ATATTACTCAGACGCTTTTTTACTTAAGACTCCATCGG-GTATTGTTGGGTAATGTTGAG 489
|||||| | |||||||| ||||||||||||||||| || ||| |||| ||||||||||||
Sbjct 179 ATATTAGTAAGACGCTTCTTTACTTAAGACTCCAT-GGAGTAATGTTAGGTAATGTTGAG 237
Query 490 TCTATTTCATTACCTTGTCTCAAGACTATGCATTTAGAACAAAATGTTTATGCCAATGAG 549
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 238 TCTATTTCATTACCTTGTCTCAAGACTATGCATTTAGAGCAAAATGTTTATGCTAATGAG 297
Query 550 ACGTGTCTAGAGTTCTTTATCTCATCTTGCCCTGTTCTTGAAGATCTGAG 599
||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 298 ACGTGTCTAGAGTTCCTTATCTCATCTTGCCCTGTTCTTGAAGATTTGAG 347
Score = 267 bits (144), Expect = 2e-70
Identities = 220/255 (86%), Gaps = 11/255 (4%)
Strand=Plus/Plus
Query 611 AGCACCGTAGAGGCTTTCATGGGTATT-ATAGCTTAGACTTTGGAGTTTTGATTGATGCA 669
|||| |||||||| ||| ||||| || |||||||||||| |||||||||||||||||||
Sbjct 437 AGCATCGTAGAGGGATTCTTGGGT-TTAATAGCTTAGACTCTGGAGTTTTGATTGATGCA 495
Query 670 CCTAGACTAAAATATTTGAAGATCGGAGATG-ATATATCGCGGAGTAAAATCGTAAGCAA 728
|||||||| || ||||||||| || || ||| || |||||||||||||||||||||| ||
Sbjct 496 CCTAGACTCAAGTATTTGAAGTTCAGAAATGAAT-TATCGCGGAGTAAAATCGTAAGTAA 554
Query 729 TATGGATTCCTTAGCCAAGATTGAAATTGTTGGCCTCTTTTATATTGAACGTGCTTTTCA 788
| ||||||||||||||||| |||||||||||||||||||| ||||| | | |||
Sbjct 555 TTTGGATTCCTTAGCCAAGGTTGAAATTGTTGGCCTCTTTGCTATTG-GCAAAC-CATCA 612
Query 789 TAA-CAAGGTGGCCCGTAACTTTTTCATCGGTATCTCCAGAGTTAGAGATATGATCATCT 847
|| ||| ||||||||||||||||||||||||||||| ||||||| ||||||||| ||||
Sbjct 613 -AACCAA-GTGGCCCGTAACTTTTTCATCGGTATCTCGAGAGTTAAAGATATGATTATCT 670
Query 848 CTGACCGT-GCTATG 861
||||| || ||||||
Sbjct 671 CTGAC-GTTGCTATG 684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51199077531
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5