BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G44495.1 Length=360 Score E Sequences producing significant alignments: (Bits) Value Ahg915763 jgi|Araly1|915763|Al_scaffold_0008_514 457 3e-128 Ahg887388 jgi|Araly1|887388|Al_scaffold_0588_1 448 2e-125 Ahg915761 jgi|Araly1|915761|Al_scaffold_0008_512 446 6e-125 Ahg915760 jgi|Araly1|915760|Al_scaffold_0008_511 442 8e-124 Ahg915759 jgi|Araly1|915759|Al_scaffold_0008_510 442 8e-124 Ahg887389 jgi|Araly1|887389|Al_scaffold_0588_2 436 4e-122 Ahg900212 jgi|Araly1|900212|Al_scaffold_0004_862 435 1e-121 Ahg915764 jgi|Araly1|915764|Al_scaffold_0008_515 388 1e-107 > Ahg915763 jgi|Araly1|915763|Al_scaffold_0008_514 Length=357 Score = 457 bits (247), Expect = 3e-128 Identities = 317/350 (91%), Gaps = 8/350 (2%) Strand=Plus/Plus Query 1 ATGGCTATAAAAAACGTGATCTTATT-T-CTAGCGGTTTTATGCATTGCATTGTCTGTAA 58 |||||| | ||||| ||||| || || | ||||||||||||||||||||| |||||| || Sbjct 1 ATGGCTTTCAAAAATGTGAT-TT-TTCTCCTAGCGGTTTTATGCATTGCACTGTCTGCAA 58 Query 59 ATGCCCAATTACCACAATTTCCGGCACTTTTTCCTTTTCCATTTCCATTTCTACCGAGTC 118 |||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 59 ATGCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTC 118 Query 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTT-ATCATCTGTGATAAATATTCCA 177 ||||||||||||||||||||||||||||||||||||| | ||||| | || ||||||||| Sbjct 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTTGA-CATCTTTTATGAATATTCCA 177 Query 178 GGGTGCATCGTAGAGTTTTCGCAATCCATACTC-TTAGAAAAGTTCGGCAAGATAGGTTC 236 ||||| |||| ||||||||||||||| |||||| || |||| |||||| || |||||| | Sbjct 178 GGGTGTATCGCAGAGTTTTCGCAATCTATACTCATTGGAAA-GTTCGGAAACATAGGTCC 236 Query 237 AGCTTGTTGCAAAGCAATTTTGGAAGCCGAAACCAATTGTATTCCGCAACTTCCGTTCAA 296 |||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||| Sbjct 237 TGCTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAA 296 Query 297 TCCGTTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGGCG 346 ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 297 TCCATTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGGCG 346 > Ahg887388 jgi|Araly1|887388|Al_scaffold_0588_1 Length=369 Score = 448 bits (242), Expect = 2e-125 Identities = 313/347 (90%), Gaps = 6/347 (2%) Strand=Plus/Plus Query 1 ATGGCTATAAAAAACGTGATCTTATT-T-CTAGCGGTTTTATGCATTGCATTGTCTGTAA 58 |||||| | ||||||||||| || || | ||||||||| ||||||||||| |||||| || Sbjct 1 ATGGCTTTCAAAAACGTGAT-TT-TTCTCCTAGCGGTTCTATGCATTGCACTGTCTGCAA 58 Query 59 ATGCCCAATTACCACAATTTCCGGCACTTTTTCCTTTTCCATTTCCATTTCTACCGAGTC 118 |||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 59 ATGCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTC 118 Query 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTTATCATCTGTGATAAATATTCCAG 178 |||||||||||||||||||||||||||||||||||| |||||| | || |||||||||| Sbjct 119 TCGGTGTACCAGGATTACCTGATATAACAAAATGTTTGTCATCTTTTATGAATATTCCAG 178 Query 179 GGTGCATCGTAGAGTTTTCGCAATCCATACTC-TTAGAAAAGTTCGGCAAGATAGGTTCA 237 |||| |||| |||||||||||||||||||||| || |||| |||||| || ||||| | Sbjct 179 GGTGTATCGCAGAGTTTTCGCAATCCATACTCATTGGAAA-GTTCGGAAACATAGGCCCT 237 Query 238 GCTTGTTGCAAAGCAATTTTGGAAGCCGAAACCAATTGTATTCCGCAACTTCCGTTCAAT 297 |||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||| Sbjct 238 GCTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAAT 297 Query 298 CCGTTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGG 344 || |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 298 CCATTTTTTCCTCCTATGCTAAAGGAACAGTGTTCAAAAACTGTTGG 344 > Ahg915761 jgi|Araly1|915761|Al_scaffold_0008_512 Length=369 Score = 446 bits (241), Expect = 6e-125 Identities = 326/366 (89%), Gaps = 10/366 (3%) Strand=Plus/Plus Query 1 ATGGCTATAAAAAACGTGATCTTATT-TC-TAGCGGTTTTATGCATTGCATTGTCTGTAA 58 |||||| | ||||||||| | || || || |||||||||||||||||||| |||||| || Sbjct 1 ATGGCTTTCAAAAACGTG-T-TTTTTCTCTTAGCGGTTTTATGCATTGCACTGTCTGCAA 58 Query 59 ATGCCCAATTACCACAATTTCCGGCACTTTTTCCTTTTCCATTTCCATTTCTACCGAGTC 118 |||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 59 ATGCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTC 118 Query 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTT-ATCATCTGTGATAAATATTCCA 177 |||||||||||||||| |||||||||||||||||||| | ||||| | || ||||||||| Sbjct 119 CCGGTGTACCAGGATTGCCTGATATAACAAAATGTTTGA-CATCTTTTATGAATATTCCA 177 Query 178 GGGTGCATCGTAGAGTTTTCGCAATCCATACTC-TTAGAAAAGTTCGGCAAGATAGGTTC 236 ||||| |||| ||||||||||||||| |||||| || | |||||| || || ||||| | Sbjct 178 GGGTGTATCGCAGAGTTTTCGCAATCTATACTCATT-GGAAAGTTTGGAAACATAGGACC 236 Query 237 AGCTTGTTGCAAAGCAATTTTGGAAGCCGAAACCAATTGTATTCCGCAACTTCCGTTCAA 296 |||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||| Sbjct 237 TGCTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAA 296 Query 297 TCCGTTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGGCGGAG--CCTCC 354 ||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 297 TCCATTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGGCGCACTTCCTCC 356 Query 355 TACTAA 360 |||||| Sbjct 357 TACTAA 362 > Ahg915760 jgi|Araly1|915760|Al_scaffold_0008_511 Length=369 Score = 442 bits (239), Expect = 8e-124 Identities = 312/347 (90%), Gaps = 6/347 (2%) Strand=Plus/Plus Query 1 ATGGCTATAAAAAACGTGATCTTATT-T-CTAGCGGTTTTATGCATTGCATTGTCTGTAA 58 |||||| | ||||||||||| || || | || |||||||||||||||||| |||||| || Sbjct 1 ATGGCTTTCAAAAACGTGAT-TT-TTCTACTGGCGGTTTTATGCATTGCACTGTCTGCAA 58 Query 59 ATGCCCAATTACCACAATTTCCGGCACTTTTTCCTTTTCCATTTCCATTTCTACCGAGTC 118 |||| |||||||||||||||||||||| ||||||||||||||| |||| |||||||||| Sbjct 59 ATGCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTTCATTCCTACCGAGTC 118 Query 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTTATCATCTGTGATAAATATTCCAG 178 ||||||||||||||||||||||||||||||||||||| |||||| | || |||||||||| Sbjct 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTTGTCATCTTTTATGAATATTCCAG 178 Query 179 GGTGCATCGTAGAGTTTTCGCAATCCATACTC-TTAGAAAAGTTCGGCAAGATAGGTTCA 237 |||| |||| ||||||||||||||| |||||| || |||| |||||| || ||||| | Sbjct 179 GGTGTATCGCAGAGTTTTCGCAATCTATACTCATTGGAAA-GTTCGGAAACATAGGCCCT 237 Query 238 GCTTGTTGCAAAGCAATTTTGGAAGCCGAAACCAATTGTATTCCGCAACTTCCGTTCAAT 297 |||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||| Sbjct 238 GCTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAAT 297 Query 298 CCGTTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGG 344 || |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 298 CCATTTTTTCCTCCTATGCTAAAGGAACAGTGTTCAAAAACTGTTGG 344 > Ahg915759 jgi|Araly1|915759|Al_scaffold_0008_510 Length=369 Score = 442 bits (239), Expect = 8e-124 Identities = 313/348 (90%), Gaps = 8/348 (2%) Strand=Plus/Plus Query 1 ATGGCTATAAAAAACGTGATCTTATT-TC-TAGCGGTTTTATGCATTGCATTGTCTGTAA 58 |||||| | ||||||||||| || || || |||||||||||||||||||| |||||| || Sbjct 1 ATGGCTTTCAAAAACGTGAT-TT-TTCTCTTAGCGGTTTTATGCATTGCACTGTCTGCAA 58 Query 59 ATGCCCAATTACCACAATTTCCGGCACTTTTTCCTTTTCCATTTCCATTTCTACCGAGTC 118 |||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 59 ATGCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTC 118 Query 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTT-ATCATCTGTGATAAATATTCCA 177 |||||||||||||||||| |||||||||||||||||| | ||||| | || ||||||||| Sbjct 119 CCGGTGTACCAGGATTACATGATATAACAAAATGTTTGA-CATCTTTTATGAATATTCCA 177 Query 178 GGGTGCATCGTAGAGTTTTCGCAATCCATACTC-TTAGAAAAGTTCGGCAAGATAGGTTC 236 ||||| |||| ||||||||||||||| |||||| || |||| |||||| || ||||| | Sbjct 178 GGGTGTATCGCAGAGTTTTCGCAATCTATACTCATTGGAAA-GTTCGGAAACATAGGCCC 236 Query 237 AGCTTGTTGCAAAGCAATTTTGGAAGCCGAAACCAATTGTATTCCGCAACTTCCGTTCAA 296 |||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||| Sbjct 237 TGCTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAA 296 Query 297 TCCGTTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGG 344 ||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 297 TCCATTTTTTCCTCCTATGCTAAAGGAACAGTGTTCAAAAACTGTTGG 344 > Ahg887389 jgi|Araly1|887389|Al_scaffold_0588_2 Length=369 Score = 436 bits (236), Expect = 4e-122 Identities = 305/338 (90%), Gaps = 6/338 (2%) Strand=Plus/Plus Query 10 AAAAACGTGATCTTATT-T-CTAGCGGTTTTATGCATTGCATTGTCTGTAAATGCCCAAT 67 ||||||||||| || || | || |||||||||||||||||| |||||| |||||| |||| Sbjct 10 AAAAACGTGAT-TT-TTCTACTGGCGGTTTTATGCATTGCACTGTCTGCAAATGCTCAAT 67 Query 68 TACCACAATTTCCGGCACTTTTTCCTTTTCCATTTCCATTTCTACCGAGTCCCGGTGTAC 127 |||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||| Sbjct 68 TACCACAATTTCCGGCACCGTTTCCTTTTCCATTTTCATTCCTACCGAGTCCCGGTGTAC 127 Query 128 CAGGATTACCTGATATAACAAAATGTTTATCATCTGTGATAAATATTCCAGGGTGCATCG 187 |||||||||||||||||||||||||||| |||||| | || |||||||||||||| |||| Sbjct 128 CAGGATTACCTGATATAACAAAATGTTTGTCATCTTTTATGAATATTCCAGGGTGTATCG 187 Query 188 TAGAGTTTTCGCAATCCATACTC-TTAGAAAAGTTCGGCAAGATAGGTTCAGCTTGTTGC 246 ||||||||||||||| |||||| || |||| |||||| || ||||| | ||||||||| Sbjct 188 CAGAGTTTTCGCAATCTATACTCATTGGAAA-GTTCGGAAACATAGGCCCTGCTTGTTGC 246 Query 247 AAAGCAATTTTGGAAGCCGAAACCAATTGTATTCCGCAACTTCCGTTCAATCCGTTTTTT 306 ||||||||||||||||| ||||||||||| ||||| |||||||| |||||||| |||||| Sbjct 247 AAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAATCCATTTTTT 306 Query 307 CCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGG 344 |||||||||||||||||||| ||||||||||||||||| Sbjct 307 CCTCCTATGCTAAAGGAACAGTGTTCAAAAACTGTTGG 344 > Ahg900212 jgi|Araly1|900212|Al_scaffold_0004_862 Length=369 Score = 435 bits (235), Expect = 1e-121 Identities = 322/363 (89%), Gaps = 9/363 (2%) Strand=Plus/Plus Query 1 ATGGCTATAAAAAACGTGATCTTATT-TC-TAGCGGTTTTATGCATTGCATTGTCTGTAA 58 |||||| | ||||||||| | || || || |||||||||||||||||||| |||||| || Sbjct 1 ATGGCTTTCAAAAACGTG-T-TTTTTCTCTTAGCGGTTTTATGCATTGCACTGTCTGCAA 58 Query 59 ATGCCCAATTACCACAATTTCCGGCACTTTTTCCTTTTCCATTTCCATTTCTACCGAGTC 118 |||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 59 ATGCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTC 118 Query 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTT-ATCATCTGTGATAAATATTCCA 177 |||||||||||||||| |||||||||||||||||||| | ||| | | || ||||||||| Sbjct 119 CCGGTGTACCAGGATTGCCTGATATAACAAAATGTTTGA-CATATTTTATGAATATTCCA 177 Query 178 GGGTGCATCGTAGAGTTTTCGCAATCCATACTC-TTAGAAAAGTTCGGCAAGATAGGTTC 236 ||||| |||| ||||||||||||||| |||||| || | |||||| || || ||||| | Sbjct 178 GGGTGTATCGCAGAGTTTTCGCAATCTATACTCATT-GGAAAGTTTGGAAACATAGGCCC 236 Query 237 AGCTTGTTGCAAAGCAATTTTGGAAGCCGAAACCAATTGTATTCCGCAACTTCCGTTCAA 296 |||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||| Sbjct 237 TGCTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAA 296 Query 297 TCCGTTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGGCGGAGCCTCCTA 356 ||| |||||||||||||||||||||||||||||||||||||||||||||| | | |||| Sbjct 297 TCCATTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGGCGCA-CTTCCTC 355 Query 357 CTA 359 ||| Sbjct 356 CTA 358 > Ahg915764 jgi|Araly1|915764|Al_scaffold_0008_515 Length=372 Score = 388 bits (210), Expect = 1e-107 Identities = 315/365 (86%), Gaps = 10/365 (3%) Strand=Plus/Plus Query 1 ATGGCTATAAAAAACGTGATCTTATT-T-CTAGCGGTTTTATGCATTGCATTGTCTGTAA 58 |||||| | ||||||||||| || || | || |||||||||||||||||| |||||| || Sbjct 1 ATGGCTTTCAAAAACGTGAT-TT-TTCTACTGGCGGTTTTATGCATTGCACTGTCTGCAA 58 Query 59 ATGCCCAATTACCACAATTTCCGGCACTTTTTCCTTTTCCATTTCCATTTCTACCGAGTC 118 |||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 59 ATGCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTC 118 Query 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTTATCATCTGTGATAAATATTCCAG 178 ||||||||||||||||||||||||||||||||||||| |||||| | || |||||||||| Sbjct 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTTGTCATCTTTTATGAATATTCCAG 178 Query 179 GGTGCATCGTAGAGTTTTCGCAA-TC-CATA-CT-CTTAGAAAAGTTCGGCAAGATAGGT 234 |||| |||| |||||||| || | || | | || | || ||||| || |||||| Sbjct 179 GGTGTATCGCAGAGTTTTGGCCGGTGGCAAATCCACTGCGCAA-GTTCGTAAACATAGGT 237 Query 235 TCAGCTTGTTGCAAAGCAATTTTGGAAGCCGAAACCAATTGTATTCCGCAACTTCCGTTC 294 | |||||||||||||||||||||||||| ||||||||||| |||| |||||||| ||| Sbjct 238 CCTGCTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCTACAACTTCCATTC 297 Query 295 AATCCGTTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGGCGGAGCCTCC 354 ||||| ||||||||||||||||| |||||||| ||||||||||||||||||| | | ||| Sbjct 298 AATCCATTTTTTCCTCCTATGCTGAAGGAACAGTGTTCAAAAACTGTTGGCGCA-CTTCC 356 Query 355 TACTA 359 | ||| Sbjct 357 TCCTA 361 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12820277904 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5