BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44495.1
Length=360
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915763 jgi|Araly1|915763|Al_scaffold_0008_514 457 3e-128
Ahg887388 jgi|Araly1|887388|Al_scaffold_0588_1 448 2e-125
Ahg915761 jgi|Araly1|915761|Al_scaffold_0008_512 446 6e-125
Ahg915760 jgi|Araly1|915760|Al_scaffold_0008_511 442 8e-124
Ahg915759 jgi|Araly1|915759|Al_scaffold_0008_510 442 8e-124
Ahg887389 jgi|Araly1|887389|Al_scaffold_0588_2 436 4e-122
Ahg900212 jgi|Araly1|900212|Al_scaffold_0004_862 435 1e-121
Ahg915764 jgi|Araly1|915764|Al_scaffold_0008_515 388 1e-107
> Ahg915763 jgi|Araly1|915763|Al_scaffold_0008_514
Length=357
Score = 457 bits (247), Expect = 3e-128
Identities = 317/350 (91%), Gaps = 8/350 (2%)
Strand=Plus/Plus
Query 1 ATGGCTATAAAAAACGTGATCTTATT-T-CTAGCGGTTTTATGCATTGCATTGTCTGTAA 58
|||||| | ||||| ||||| || || | ||||||||||||||||||||| |||||| ||
Sbjct 1 ATGGCTTTCAAAAATGTGAT-TT-TTCTCCTAGCGGTTTTATGCATTGCACTGTCTGCAA 58
Query 59 ATGCCCAATTACCACAATTTCCGGCACTTTTTCCTTTTCCATTTCCATTTCTACCGAGTC 118
|||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 59 ATGCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTC 118
Query 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTT-ATCATCTGTGATAAATATTCCA 177
||||||||||||||||||||||||||||||||||||| | ||||| | || |||||||||
Sbjct 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTTGA-CATCTTTTATGAATATTCCA 177
Query 178 GGGTGCATCGTAGAGTTTTCGCAATCCATACTC-TTAGAAAAGTTCGGCAAGATAGGTTC 236
||||| |||| ||||||||||||||| |||||| || |||| |||||| || |||||| |
Sbjct 178 GGGTGTATCGCAGAGTTTTCGCAATCTATACTCATTGGAAA-GTTCGGAAACATAGGTCC 236
Query 237 AGCTTGTTGCAAAGCAATTTTGGAAGCCGAAACCAATTGTATTCCGCAACTTCCGTTCAA 296
|||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||
Sbjct 237 TGCTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAA 296
Query 297 TCCGTTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGGCG 346
||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCCATTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGGCG 346
> Ahg887388 jgi|Araly1|887388|Al_scaffold_0588_1
Length=369
Score = 448 bits (242), Expect = 2e-125
Identities = 313/347 (90%), Gaps = 6/347 (2%)
Strand=Plus/Plus
Query 1 ATGGCTATAAAAAACGTGATCTTATT-T-CTAGCGGTTTTATGCATTGCATTGTCTGTAA 58
|||||| | ||||||||||| || || | ||||||||| ||||||||||| |||||| ||
Sbjct 1 ATGGCTTTCAAAAACGTGAT-TT-TTCTCCTAGCGGTTCTATGCATTGCACTGTCTGCAA 58
Query 59 ATGCCCAATTACCACAATTTCCGGCACTTTTTCCTTTTCCATTTCCATTTCTACCGAGTC 118
|||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 59 ATGCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTC 118
Query 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTTATCATCTGTGATAAATATTCCAG 178
|||||||||||||||||||||||||||||||||||| |||||| | || ||||||||||
Sbjct 119 TCGGTGTACCAGGATTACCTGATATAACAAAATGTTTGTCATCTTTTATGAATATTCCAG 178
Query 179 GGTGCATCGTAGAGTTTTCGCAATCCATACTC-TTAGAAAAGTTCGGCAAGATAGGTTCA 237
|||| |||| |||||||||||||||||||||| || |||| |||||| || ||||| |
Sbjct 179 GGTGTATCGCAGAGTTTTCGCAATCCATACTCATTGGAAA-GTTCGGAAACATAGGCCCT 237
Query 238 GCTTGTTGCAAAGCAATTTTGGAAGCCGAAACCAATTGTATTCCGCAACTTCCGTTCAAT 297
|||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||
Sbjct 238 GCTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAAT 297
Query 298 CCGTTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGG 344
|| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 298 CCATTTTTTCCTCCTATGCTAAAGGAACAGTGTTCAAAAACTGTTGG 344
> Ahg915761 jgi|Araly1|915761|Al_scaffold_0008_512
Length=369
Score = 446 bits (241), Expect = 6e-125
Identities = 326/366 (89%), Gaps = 10/366 (3%)
Strand=Plus/Plus
Query 1 ATGGCTATAAAAAACGTGATCTTATT-TC-TAGCGGTTTTATGCATTGCATTGTCTGTAA 58
|||||| | ||||||||| | || || || |||||||||||||||||||| |||||| ||
Sbjct 1 ATGGCTTTCAAAAACGTG-T-TTTTTCTCTTAGCGGTTTTATGCATTGCACTGTCTGCAA 58
Query 59 ATGCCCAATTACCACAATTTCCGGCACTTTTTCCTTTTCCATTTCCATTTCTACCGAGTC 118
|||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 59 ATGCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTC 118
Query 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTT-ATCATCTGTGATAAATATTCCA 177
|||||||||||||||| |||||||||||||||||||| | ||||| | || |||||||||
Sbjct 119 CCGGTGTACCAGGATTGCCTGATATAACAAAATGTTTGA-CATCTTTTATGAATATTCCA 177
Query 178 GGGTGCATCGTAGAGTTTTCGCAATCCATACTC-TTAGAAAAGTTCGGCAAGATAGGTTC 236
||||| |||| ||||||||||||||| |||||| || | |||||| || || ||||| |
Sbjct 178 GGGTGTATCGCAGAGTTTTCGCAATCTATACTCATT-GGAAAGTTTGGAAACATAGGACC 236
Query 237 AGCTTGTTGCAAAGCAATTTTGGAAGCCGAAACCAATTGTATTCCGCAACTTCCGTTCAA 296
|||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||
Sbjct 237 TGCTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAA 296
Query 297 TCCGTTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGGCGGAG--CCTCC 354
||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 297 TCCATTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGGCGCACTTCCTCC 356
Query 355 TACTAA 360
||||||
Sbjct 357 TACTAA 362
> Ahg915760 jgi|Araly1|915760|Al_scaffold_0008_511
Length=369
Score = 442 bits (239), Expect = 8e-124
Identities = 312/347 (90%), Gaps = 6/347 (2%)
Strand=Plus/Plus
Query 1 ATGGCTATAAAAAACGTGATCTTATT-T-CTAGCGGTTTTATGCATTGCATTGTCTGTAA 58
|||||| | ||||||||||| || || | || |||||||||||||||||| |||||| ||
Sbjct 1 ATGGCTTTCAAAAACGTGAT-TT-TTCTACTGGCGGTTTTATGCATTGCACTGTCTGCAA 58
Query 59 ATGCCCAATTACCACAATTTCCGGCACTTTTTCCTTTTCCATTTCCATTTCTACCGAGTC 118
|||| |||||||||||||||||||||| ||||||||||||||| |||| ||||||||||
Sbjct 59 ATGCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTTCATTCCTACCGAGTC 118
Query 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTTATCATCTGTGATAAATATTCCAG 178
||||||||||||||||||||||||||||||||||||| |||||| | || ||||||||||
Sbjct 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTTGTCATCTTTTATGAATATTCCAG 178
Query 179 GGTGCATCGTAGAGTTTTCGCAATCCATACTC-TTAGAAAAGTTCGGCAAGATAGGTTCA 237
|||| |||| ||||||||||||||| |||||| || |||| |||||| || ||||| |
Sbjct 179 GGTGTATCGCAGAGTTTTCGCAATCTATACTCATTGGAAA-GTTCGGAAACATAGGCCCT 237
Query 238 GCTTGTTGCAAAGCAATTTTGGAAGCCGAAACCAATTGTATTCCGCAACTTCCGTTCAAT 297
|||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||
Sbjct 238 GCTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAAT 297
Query 298 CCGTTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGG 344
|| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 298 CCATTTTTTCCTCCTATGCTAAAGGAACAGTGTTCAAAAACTGTTGG 344
> Ahg915759 jgi|Araly1|915759|Al_scaffold_0008_510
Length=369
Score = 442 bits (239), Expect = 8e-124
Identities = 313/348 (90%), Gaps = 8/348 (2%)
Strand=Plus/Plus
Query 1 ATGGCTATAAAAAACGTGATCTTATT-TC-TAGCGGTTTTATGCATTGCATTGTCTGTAA 58
|||||| | ||||||||||| || || || |||||||||||||||||||| |||||| ||
Sbjct 1 ATGGCTTTCAAAAACGTGAT-TT-TTCTCTTAGCGGTTTTATGCATTGCACTGTCTGCAA 58
Query 59 ATGCCCAATTACCACAATTTCCGGCACTTTTTCCTTTTCCATTTCCATTTCTACCGAGTC 118
|||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 59 ATGCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTC 118
Query 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTT-ATCATCTGTGATAAATATTCCA 177
|||||||||||||||||| |||||||||||||||||| | ||||| | || |||||||||
Sbjct 119 CCGGTGTACCAGGATTACATGATATAACAAAATGTTTGA-CATCTTTTATGAATATTCCA 177
Query 178 GGGTGCATCGTAGAGTTTTCGCAATCCATACTC-TTAGAAAAGTTCGGCAAGATAGGTTC 236
||||| |||| ||||||||||||||| |||||| || |||| |||||| || ||||| |
Sbjct 178 GGGTGTATCGCAGAGTTTTCGCAATCTATACTCATTGGAAA-GTTCGGAAACATAGGCCC 236
Query 237 AGCTTGTTGCAAAGCAATTTTGGAAGCCGAAACCAATTGTATTCCGCAACTTCCGTTCAA 296
|||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||
Sbjct 237 TGCTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAA 296
Query 297 TCCGTTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGG 344
||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 297 TCCATTTTTTCCTCCTATGCTAAAGGAACAGTGTTCAAAAACTGTTGG 344
> Ahg887389 jgi|Araly1|887389|Al_scaffold_0588_2
Length=369
Score = 436 bits (236), Expect = 4e-122
Identities = 305/338 (90%), Gaps = 6/338 (2%)
Strand=Plus/Plus
Query 10 AAAAACGTGATCTTATT-T-CTAGCGGTTTTATGCATTGCATTGTCTGTAAATGCCCAAT 67
||||||||||| || || | || |||||||||||||||||| |||||| |||||| ||||
Sbjct 10 AAAAACGTGAT-TT-TTCTACTGGCGGTTTTATGCATTGCACTGTCTGCAAATGCTCAAT 67
Query 68 TACCACAATTTCCGGCACTTTTTCCTTTTCCATTTCCATTTCTACCGAGTCCCGGTGTAC 127
|||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||
Sbjct 68 TACCACAATTTCCGGCACCGTTTCCTTTTCCATTTTCATTCCTACCGAGTCCCGGTGTAC 127
Query 128 CAGGATTACCTGATATAACAAAATGTTTATCATCTGTGATAAATATTCCAGGGTGCATCG 187
|||||||||||||||||||||||||||| |||||| | || |||||||||||||| ||||
Sbjct 128 CAGGATTACCTGATATAACAAAATGTTTGTCATCTTTTATGAATATTCCAGGGTGTATCG 187
Query 188 TAGAGTTTTCGCAATCCATACTC-TTAGAAAAGTTCGGCAAGATAGGTTCAGCTTGTTGC 246
||||||||||||||| |||||| || |||| |||||| || ||||| | |||||||||
Sbjct 188 CAGAGTTTTCGCAATCTATACTCATTGGAAA-GTTCGGAAACATAGGCCCTGCTTGTTGC 246
Query 247 AAAGCAATTTTGGAAGCCGAAACCAATTGTATTCCGCAACTTCCGTTCAATCCGTTTTTT 306
||||||||||||||||| ||||||||||| ||||| |||||||| |||||||| ||||||
Sbjct 247 AAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAATCCATTTTTT 306
Query 307 CCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGG 344
|||||||||||||||||||| |||||||||||||||||
Sbjct 307 CCTCCTATGCTAAAGGAACAGTGTTCAAAAACTGTTGG 344
> Ahg900212 jgi|Araly1|900212|Al_scaffold_0004_862
Length=369
Score = 435 bits (235), Expect = 1e-121
Identities = 322/363 (89%), Gaps = 9/363 (2%)
Strand=Plus/Plus
Query 1 ATGGCTATAAAAAACGTGATCTTATT-TC-TAGCGGTTTTATGCATTGCATTGTCTGTAA 58
|||||| | ||||||||| | || || || |||||||||||||||||||| |||||| ||
Sbjct 1 ATGGCTTTCAAAAACGTG-T-TTTTTCTCTTAGCGGTTTTATGCATTGCACTGTCTGCAA 58
Query 59 ATGCCCAATTACCACAATTTCCGGCACTTTTTCCTTTTCCATTTCCATTTCTACCGAGTC 118
|||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 59 ATGCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTC 118
Query 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTT-ATCATCTGTGATAAATATTCCA 177
|||||||||||||||| |||||||||||||||||||| | ||| | | || |||||||||
Sbjct 119 CCGGTGTACCAGGATTGCCTGATATAACAAAATGTTTGA-CATATTTTATGAATATTCCA 177
Query 178 GGGTGCATCGTAGAGTTTTCGCAATCCATACTC-TTAGAAAAGTTCGGCAAGATAGGTTC 236
||||| |||| ||||||||||||||| |||||| || | |||||| || || ||||| |
Sbjct 178 GGGTGTATCGCAGAGTTTTCGCAATCTATACTCATT-GGAAAGTTTGGAAACATAGGCCC 236
Query 237 AGCTTGTTGCAAAGCAATTTTGGAAGCCGAAACCAATTGTATTCCGCAACTTCCGTTCAA 296
|||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||
Sbjct 237 TGCTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAA 296
Query 297 TCCGTTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGGCGGAGCCTCCTA 356
||| |||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 297 TCCATTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGGCGCA-CTTCCTC 355
Query 357 CTA 359
|||
Sbjct 356 CTA 358
> Ahg915764 jgi|Araly1|915764|Al_scaffold_0008_515
Length=372
Score = 388 bits (210), Expect = 1e-107
Identities = 315/365 (86%), Gaps = 10/365 (3%)
Strand=Plus/Plus
Query 1 ATGGCTATAAAAAACGTGATCTTATT-T-CTAGCGGTTTTATGCATTGCATTGTCTGTAA 58
|||||| | ||||||||||| || || | || |||||||||||||||||| |||||| ||
Sbjct 1 ATGGCTTTCAAAAACGTGAT-TT-TTCTACTGGCGGTTTTATGCATTGCACTGTCTGCAA 58
Query 59 ATGCCCAATTACCACAATTTCCGGCACTTTTTCCTTTTCCATTTCCATTTCTACCGAGTC 118
|||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 59 ATGCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTC 118
Query 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTTATCATCTGTGATAAATATTCCAG 178
||||||||||||||||||||||||||||||||||||| |||||| | || ||||||||||
Sbjct 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTTGTCATCTTTTATGAATATTCCAG 178
Query 179 GGTGCATCGTAGAGTTTTCGCAA-TC-CATA-CT-CTTAGAAAAGTTCGGCAAGATAGGT 234
|||| |||| |||||||| || | || | | || | || ||||| || ||||||
Sbjct 179 GGTGTATCGCAGAGTTTTGGCCGGTGGCAAATCCACTGCGCAA-GTTCGTAAACATAGGT 237
Query 235 TCAGCTTGTTGCAAAGCAATTTTGGAAGCCGAAACCAATTGTATTCCGCAACTTCCGTTC 294
| |||||||||||||||||||||||||| ||||||||||| |||| |||||||| |||
Sbjct 238 CCTGCTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCTACAACTTCCATTC 297
Query 295 AATCCGTTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGGCGGAGCCTCC 354
||||| ||||||||||||||||| |||||||| ||||||||||||||||||| | | |||
Sbjct 298 AATCCATTTTTTCCTCCTATGCTGAAGGAACAGTGTTCAAAAACTGTTGGCGCA-CTTCC 356
Query 355 TACTA 359
| |||
Sbjct 357 TCCTA 361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12820277904
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5