BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44500.1
Length=1132
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494537 jgi|Araly1|494537|fgenesh2_kg.8__353__AT5G44500.1 1587 0.0
Ahg492815 jgi|Araly1|492815|fgenesh2_kg.7__2248__AT4G20440.3 525 3e-148
Ahg915758 jgi|Araly1|915758|Al_scaffold_0008_509 121 1e-26
> Ahg494537 jgi|Araly1|494537|fgenesh2_kg.8__353__AT5G44500.1
Length=1094
Score = 1587 bits (859), Expect = 0.0
Identities = 1024/1101 (93%), Gaps = 22/1101 (2%)
Strand=Plus/Plus
Query 21 AATTCTCCGGCGTATACAAGTCGCCGGCAAAAATGTCGATGTCGAAGAGCTCCAAGATGC 80
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 4 AATTCTCCGGCGTATTCAAGTCGCCGGCGAAAATGTCGATGTCGAAGAGCTCCAAGATGC 63
Query 81 TTCAGTTCATAAACTACAGGATGCGAGTAACAATCCAAGACGGAAGACAGCTAATCGGAA 140
||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||
Sbjct 64 TTCAGTTCATAAACTACAGGATGCGAGTAACGATCCAAGACGGACGTCAGCTAATCGGAA 123
Query 141 AATTCATGGCGTTCGATCGCCACATGAATCTTGTTCTTGGCGACTGCGAAGAGTTTCGAA 200
||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |
Sbjct 124 AATTCATGGCGTTCGATCGTCACATGAATCTCGTTCTCGGCGACTGCGAAGAGTTTCGGA 183
Query 201 AACTTCCTCCGGCGAAAGGTAATAAGAAGACGAACGAAGAAAGAGAAGAGCGTCGTACGC 260
||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 184 AACTTCCTCCGACGAAAGGTAGTAAGAAGACGAACGAAGATAGAGAAGAGCGTCGTACGC 243
Query 261 TTGGTTTGGTTTTACTTAGAGGAGAAGAAGTGATTTCGATGACTGTCGAAGGTCCACCGC 320
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 244 TTGGTTTGGTTTTACTTAGAGGAGAAGAAGTGATTTCAATGACTGTCGAAGGTCCACCAC 303
Query 321 CACCTGAAGAATCTCGCGCCAAATCTGGATCTGTAACCGCTGTGGCTGGTCCCGGAATCG 380
|||| |||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 304 CACCGGAAGAATCTCGCGCCAAATCAGGATCTGTAACCGCCGTTGCTGGTCCCGGAATCG 363
Query 381 GTCGTGCTGCTGGACGTGGAGTACCTACTGGTCCATTGGTTCAAGCTCAGCCTGGTTTAT 440
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 364 GTCGTGCTGCTGGACGTGGTGTACCTACTGGTCCATTGGTTCAAGCTCAGCCTGGATTAT 423
Query 441 CTGGTCCTGTTCGTGGAATTGGTGGACCTGCTCCTGGAATGATGCAGCCTCAGATCTCTA 500
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 424 CTGGTCCTGTTCGTGGAATTGGTGGACCTGCTCCGGGAATGATGCAGCCTCAGATCTCTA 483
Query 501 GACCACCACAGATTATTCGTCCTCCGGGACAAATGCCACCACAGCCT-C--C---TTTTG 554
||||||| |||||||||||||| || ||||||||||| |||| |||| | | ||||
Sbjct 484 GACCACCGCAGATTATTCGTCCGCCAGGACAAATGCCGCCACCGCCTCCGTCTGGTTTTA 543
Query 555 CTGGTCAAGGAGGTCCTCCTCCACCTTATGGTATGAGACCACCGTATCCTGGTCCACCAC 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 CTGGTCAAGGAGGTCCTCCTCCACCTTATGGTATGAGACCACCGTATCCTGGTCCACCAC 603
Query 615 CGCCTCAGTATGGTGGACAGCAAAGGCCAATGATGATTCCTCCACCTGGTGGTATGATGA 674
||||||| ||||||||||| || ||||||||||||||||||| ||||||||||||||||
Sbjct 604 CGCCTCAATATGGTGGACA--AA-GGCCAATGATGATTCCTCCGCCTGGTGGTATGATGA 660
Query 675 GAGGACCTCCTCCACCTCATGGTATGCAAGGACCGCCTCCTTCTCGCCCTGGAATGCCTC 734
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 661 GAGGACCTCCTCCACCTCATGGGATGCAAGGACCGCCTCCGCCTCGCCCTGGAATGCCTC 720
Query 735 C-CC-CC-GGTGGTGCTCCGATGTTTGCTCCGCCTCATCCTGGCATGCCACCTGCTCCGC 791
| || || ||||||||||| |||||||||||||||| || |||||||| ||| ||||||
Sbjct 721 CACCGCCTGGTGGTGCTCCCATGTTTGCTCCGCCTCGCCCGGGCATGCCGCCTCCTCCGC 780
Query 792 CAAATCACCATAATCAGCAACATTGATTAGGAGTCACTTCATCTACAACGAAAGCAACAT 851
||||||| |||||||||||||||||||||||||||||||||||||| ||| |||| ||||
Sbjct 781 CAAATCATCATAATCAGCAACATTGATTAGGAGTCACTTCATCTACTACGGAAGCCACAT 840
Query 852 CCACATGATTGAGTTACCCC-TCGGCTAGTCGTAGCGTTTTTCTCCGTGAAGCTCAGAGA 910
|||||||||||||||||||| |||||||||| |||||||||||||| || |||||||||
Sbjct 841 CCACATGATTGAGTTACCCCCTCGGCTAGTCATAGCGTTTTTCTCCCTGGAGCTCAGAGG 900
Query 911 ATTGATGAGTTCATATTGGTGATTT-CTCGTGGAAAAAGCAACTGATTTTAGAAATAGTG 969
|| |||||||||||||||||| ||| || |||||||||||||||||||||||||||||||
Sbjct 901 ATCGATGAGTTCATATTGGTG-TTTGCT-GTGGAAAAAGCAACTGATTTTAGAAATAGTG 958
Query 970 AACTTGTAGGAGTTACAACCTTGCTCCATGAACTTGAATGTATTACTTGTAAAAGAGGCT 1029
||||||||| |||||| ||||||| |||||||||| |||||||||||||| |||||||
Sbjct 959 AACTTGTAGAAGTTACTGTCTTGCTCTATGAACTTGAGTGTATTACTTGTAATAGAGGCT 1018
Query 1030 CTCAATGGTTTTGACTGGCAATTCGGTTCTCAACATATATTAGGCTATGTTG-CTGGTTA 1088
|||||||||| |||||||||||||||||||||||| | ||||||||||||| | |||||
Sbjct 1019 CTCAATGGTT--GACTGGCAATTCGGTTCTCAACAT-T-TTAGGCTATGTTGTC-GGTTA 1073
Query 1089 TGTACGTAACAAATATCTTAC 1109
||||||||||||||| |||||
Sbjct 1074 TGTACGTAACAAATAACTTAC 1094
> Ahg492815 jgi|Araly1|492815|fgenesh2_kg.7__2248__AT4G20440.3
Length=1429
Score = 525 bits (284), Expect = 3e-148
Identities = 630/786 (80%), Gaps = 67/786 (9%)
Strand=Plus/Plus
Query 45 CGGCAAAAATGTCGATGTCGAAGAGCTCCAAGATGCTTCAGTTCATAAACTACAGGATGC 104
|||| |||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 102 CGGCGAAAATGTCGATGTCGAAGAGTTCAAAGATGCTTCAGTTCATCAACTACAGGATGC 161
Query 105 GAGTAACAATCCAAGACGGAAGACAGCTAATCGGAAAATTCATGGCGTTCGATCGCCACA 164
|||| || |||||||||||||||||||| | || || ||||||||||| || || ||||
Sbjct 162 GAGTGACGATCCAAGACGGAAGACAGCTCGTTGGGAAGTTCATGGCGTTTGACCGTCACA 221
Query 165 TGAATCTTGTTCTTGGCGACTGCGAAGAGTTTCGAAAACTTCCTCCGGCGAAAGGTAATA 224
|||| || ||||| ||||| ||||| |||||||| || ||||| || |||||||| |
Sbjct 222 TGAACCTCGTTCTCGGCGATTGCGAGGAGTTTCGTAAGCTTCCACCAGCGAAAGG---GA 278
Query 225 AGAAGA-CGAACGAAGAAAGAGAAGAGCGTCGTACGCTTGGTTTGGTTTTACTTAGAGGA 283
|||||| | |||||||| | ||||| || |||||||| ||||||||||| ||||||||
Sbjct 279 AGAAGATC-AACGAAGAGCGTGAAGATCGCCGTACGCTAGGTTTGGTTTTGCTTAGAGGT 337
Query 284 GAAGAAGTGATTTCGATGACTGTCGAAGGTCCACCGCCACCTGAAGAATCTCGCGCCAAA 343
|||||||| || || |||||||| ||||| ||||| || |||||||||||||| || |||
Sbjct 338 GAAGAAGTTATCTCAATGACTGTTGAAGGACCACCTCCTCCTGAAGAATCTCGTGCTAAA 397
Query 344 TCTGGATCTGTAACCGCTGTGGCTGGTCCCGGAATCGGTCGTGCTGCTGGACGTGGAGTA 403
|||| |||| | | ||||| |||||||| ||||| || ||||| ||||| ||||||||
Sbjct 398 GCTGGCTCTGCAGCTGCTGTTGCTGGTCCAGGAATTGGCCGTGCCGCTGGGCGTGGAGTT 457
Query 404 CCTACTGGTCCATTGGTTCAAGCTCAGCCTGGTTTATCTGGTCCTGTTCGTGGAATTGGT 463
|| |||||||| || |||||||||||||||| |||| |||||||||||||| |||||
Sbjct 458 CCAACTGGTCCGTTAATTCAAGCTCAGCCTGGACTATCAGGTCCTGTTCGTGGTGTTGGT 517
Query 464 GGACCTGCTCCTGGAATGATGCAGCCTCAGATCTCTAGACCACCACA------------- 510
||||| ||||| |||||||||||||||||||||||| | || |||||
Sbjct 518 GGACCAGCTCCGGGAATGATGCAGCCTCAGATCTCTCGTCCGCCACAGCTTTCGGCTCCT 577
Query 511 --GATTATTCGTCCTCCGGGACA-A--ATGCCACCACAGCC-TCCTTT--T-G-C-TGG- 558
||||||||| ||||||||||| | ||||||| | || | ||| | | | ||
Sbjct 578 CCGATTATTCGACCTCCGGGACAGATGTTGCCACCTCCTCCAGCTTTTGGTGGTCAAGGT 637
Query 559 --T-CAA---G--GAGGTCCTCCTCCACCTTATGGTATGA-G--A---CCAC--C-GTAT 601
| ||| | |||||||||| || ||||| ||||||| | | |||| | || |
Sbjct 638 CCTCCAATGGGAAGAGGTCCTCCACCGCCTTACGGTATGAGGCCACCGCCACAGCAGTTT 697
Query 602 CCTGGTCCACCACCGCCTCAGTATGGTGGACAGCAAAGGCCAATGATGATTCCTCCACCT 661
|||| ||||||||||||||||| ||| | |||||||| | ||||||||||| |||
Sbjct 698 TCTGGACCACCACCGCCTCAGTA---TGG--A-CAAAGGCC-A--ATGATTCCTCCTCCT 748
Query 662 GGTGGTATGATGAGAGGA---CCTCCTCCACCTCATGGTATGCAAGGACCGCCTCCTTCT 718
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct 749 GGTGGTATGATGAGAGGACCTCCTCCTCCACCTCATGGGATGCAAGGACCGCCTCCGCCT 808
Query 719 CGCCCTGGAATGCCTCCCCC-CGGTGGTGCTCCGATGTTTGCTCCGCCTCATCCTGGCAT 777
|||||||||||||||||||| | ||||| | | |||||||| || | |||||||||
Sbjct 809 CGCCCTGGAATGCCTCCCCCTCC-TGGTG----G-T-TTTGCTCCACCGCGTCCTGGCAT 861
Query 778 GCCACC 783
||||||
Sbjct 862 GCCACC 867
> Ahg915758 jgi|Araly1|915758|Al_scaffold_0008_509
Length=204
Score = 121 bits (65), Expect = 1e-26
Identities = 67/68 (99%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 53 ATGTCGATGTCGAAGAGCTCCAAGATGCTTCAGTTCATAAACTACAGGATGCGAGTAACA 112
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCGATGTCGAAGAGCTCCAAGATGCTTCAGTTCATAAACTACAGGATGCGAGTAACG 60
Query 113 ATCCAAGA 120
||||||||
Sbjct 61 ATCCAAGA 68
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42202069119
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5