BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44520.1
Length=1300
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915755 jgi|Araly1|915755|Al_scaffold_0008_506 1282 0.0
> Ahg915755 jgi|Araly1|915755|Al_scaffold_0008_506
Length=873
Score = 1282 bits (694), Expect = 0.0
Identities = 813/870 (93%), Gaps = 9/870 (1%)
Strand=Plus/Plus
Query 87 ATGGTTACTGCGACAGCATCAACTCCATTTTCACTCTCGTCGTCCGTGGTTTTCACGCGC 146
||||| | |||||||||||| |||||| |||||||||||||||||||| |||||||||||
Sbjct 1 ATGGTAATTGCGACAGCATCGACTCCAGTTTCACTCTCGTCGTCCGTGCTTTTCACGCGC 60
Query 147 CGTCGTAATTTCAAACGTTTTCCAGT---T----T--GCGCCAGTCTTTCTCCGGAGGTT 197
||||||||||||||||||||| |||| | | ||||||||||||||||||||||
Sbjct 61 CGTCGTAATTTCAAACGTTTTTCAGTACCTCGAGTAACCGCCAGTCTTTCTCCGGAGGTT 120
Query 198 TCTCCTCTTCTCAGAGCAGCTCATCACACTGTGGATAATTATGTAAAGAGTGGGATGATT 257
|||||||||||| |||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 121 TCTCCTCTTCTCCGAGCAGCTCACCACACCGTGGATAAATATGTAAAGAGTGGGATGATT 180
Query 258 ATTGGTTTAGGATCTGGAGAAGCTTCAGATTTTGCTATACGTTATTTGGGTCAACAACTT 317
|||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 181 ATTGGTTTAGGATCTGGAGAAGCTTCAGATATGGCTATACGTTATTTGGGTCAGCAACTT 240
Query 318 GGTTCTGGTTCTTTACATAATGTTGTTGGTGTACCAATGTCTGCTCGAAGTGCGAGTGAA 377
|||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||
Sbjct 241 CGTTCTGGTTCTTTACAAAATGTTGTTGGTGTACCAATGTCTGCTCAAAGCGCGAGTGAA 300
Query 378 GCAGCAAAGTATGGAATCCCCTTGGAATATTACCGGGATGGTGTTCAGATTGATTTTGCA 437
|||||||||| ||||||||| |||||||||| |||||||||| |||||||||||||||||
Sbjct 301 GCAGCAAAGTCTGGAATCCCTTTGGAATATTTCCGGGATGGTTTTCAGATTGATTTTGCA 360
Query 438 TTTCATGATGCTGATGCTGTAGAAGAGAATACGCTTATTGCAGTTATTGGACGGCGGAGA 497
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 361 TTTCATGATGCTGATGCTGTAGAAGAGGGTACGCTTATTGCAGTTATTGGACGACGGAGA 420
Query 498 AGTTCACAGGAAGATGACTATATTCTGAAACAAAAGTCTATTGTAAAAGTAGCTGATGAG 557
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 421 AGTTCACAGGAAGATGATTATATTCTGAAACAAAAGTCTATTGTAAAAGCAGCTGATGAG 480
Query 558 GCAGTCTTCATGATAAAGGAAGAACAATACAAAGCCGGTCTTGAAGGTTCTATCCCTGTT 617
|||||||| ||||| || |||||||||||||||||| | |||||||||||||||||||||
Sbjct 481 GCAGTCTTTATGATTAATGAAGAACAATACAAAGCCAGCCTTGAAGGTTCTATCCCTGTT 540
Query 618 TTAGTTCAATCTCTTAATTGGTTGGCCATAGCTGAGGAGATAGATGACTTGTATCTAGGC 677
||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 541 TTAGTTCAATCCCTTAATTGGTTGGCCATAGCTGAGGAGATAGATGACTTTTATTTAGGC 600
Query 678 GATGCAGAGGTGTGGAGAAGAGCTTCTGTTGAAAATGAAGGCCCTCTTGGAGGAGACTTT 737
||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 601 GATGCAGAGGTTTGGAGAAGAGCTTCTGTAGAAAATGAAGGCCCTCTTGGAGGAAACTTT 660
Query 738 CCTATAGTTACCAGTGATGGTCACAACATTCTTGATGTTATATTTACAACTCCGATTCGA 797
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
Sbjct 661 CCTATAGTTACCAGTGATGGTCACAATATTCTTGATGTTATATTTACAACTCCAATTCCA 720
Query 798 AGCCTCGCTGACTTGGCTACAAGCCTTGATAAGATTGATGGGGTTGTGGACCATGGACTA 857
|||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 721 AGCCTCGCTGCCGTGGCTACAAGCCTGGATAAGATTGATGGGGTTGTGGACCATGGACTA 780
Query 858 ATTATCAAAACTCGATGCACGGTGGTGATTGCAGAAGAAACTGTTGTAAGAAGTGTTACC 917
|||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||
Sbjct 781 ATTATCAAAACTCGATGCACGGTGTTGATCGCAGAAGAAACTGATGTAAGAAGTGTTACC 840
Query 918 TTGCAGACCAGTGCATTGGAGGGTGGTGTA 947
||||||||||||||| ||||||||||||||
Sbjct 841 TTGCAGACCAGTGCAGTGGAGGGTGGTGTA 870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48606719175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5