BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G44540.1

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg915752 jgi|Araly1|915752|Al_scaffold_0008_503                     518    1e-146


> Ahg915752 jgi|Araly1|915752|Al_scaffold_0008_503
Length=357

 Score =  518 bits (280),  Expect = 1e-146
 Identities = 335/361 (93%), Gaps = 5/361 (1%)
 Strand=Plus/Plus

Query  1    ATGTCGAAAATCTCAAAAGCTTCTTCTCTCTGTTTACTCCTTCTCGTCTTCTTCCTCTTC  60
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTCGAAAATCTCAAAGGCTTCTTCTCTCTGTTTACTCCTTCTCGTCTTCTTCCTCTTC  60

Query  61   AGTTCCCAACCCGCACTCTCACTCCGTGGCCCAAAACTTCAATCATCAGAACCAAAATCA  120
            ||||||| ||| ||| |||||||||||||||||||||| ||||||   |||||||||| |
Sbjct  61   AGTTCCCGACCTGCATTCTCACTCCGTGGCCCAAAACTGCAATCA---GAACCAAAATTA  117

Query  121  GCTCAAACCCTAATGAATAATTCGTCTTCAATGAACAAGATCAACTCTGGAAA-TGCAAA  179
            ||||||||||||||| || ||||||||||||||| ||||||| |||||  ||| ||||||
Sbjct  118  GCTCAAACCCTAATGGATGATTCGTCTTCAATGAGCAAGATCGACTCTA-AAAGTGCAAA  176

Query  180  ATCCATGATTGCTGGTTTCTTCAGTCACAAGTTTCCATTAAAGGGATGGCCTTTCCCTAA  239
            |||||||||||| || ||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct  177  ATCCATGATTGCAGGATTCTTCAGTCACAAGTTTCCATTAAAGGGCTGGCCATTCCCAAA  236

Query  240  GTACCCACCTTTCACTATGGTTAACCCTAATATTGCAACAAACCCATCTGGAGCGCAAGA  299
            |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct  237  GTACCCACCTTTCACTATGGTTAACCCTAATATTCCAACAAACCCATCTGGAGCTCAAGA  296

Query  300  GGAATCCGCAAAGTTACCTTCTTCTCCAAGCAAAGACAACAAAGATGGACGAAACGCTTG  359
            |||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct  297  GGAATCCGTAAAGTTACCTTCTTCCCCAAGCAAAGACAACAAAGATGGAGGAAACGCTTG  356

Query  360  A  360
            |
Sbjct  357  A  357



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12820277904


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5