BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44550.1
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915751 jgi|Araly1|915751|Al_scaffold_0008_502 968 0.0
Ahg492822 jgi|Araly1|492822|fgenesh2_kg.7__2255__AT4G20390.1 363 2e-99
> Ahg915751 jgi|Araly1|915751|Al_scaffold_0008_502
Length=588
Score = 968 bits (524), Expect = 0.0
Identities = 564/584 (97%), Gaps = 0/584 (0%)
Strand=Plus/Plus
Query 50 CAAAGCTTACATTGGCTGCTACGAGCGGTAAGAGCTGCAAAATACTCTTAGGGCTGAGAT 109
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5 CAAAGCTCGCATTGGCTGCTACGAGCGGTAAGAGCTGCAAAATACTCTTAGGGCTGAGAT 64
Query 110 TACTTGCCTTCTCAGCCACGTTATCTGCAGCTATTGTAATGGGACTCAACAAAGAGACAA 169
||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||
Sbjct 65 TACTTGCCTTCTCAGCCACGTTATCTGCAGCCATTGTAATGGGATTGAACAAAGAGACAG 124
Query 170 AGACTTTTATTGTGGGCAAAGTTGGAAATACTCCAATTCAAGCTACTTTTACTGCTAAGT 229
|||||||| ||||||| ||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 125 AGACTTTTGTTGTGGGAAAAGTTGGAAATACTCCAATTAAAGCTACTTTCACTGCTAAGT 184
Query 230 TCGACCACACACCAGCTTTTGTGTTTTTCGTAGTAGCTAATGCAATGGTGAGCTTCCACA 289
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 185 TCGACCACACACCAGCTTTTGTGTTTTTCGTAGTGGCTAATGCAATGGTGAGCTTCCACA 244
Query 290 ACTTGTTGATGATTGCTCTTCAGATATTTGGAGGGAAAATGGAGTTCACTGGTTTTCGGC 349
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 245 ACTTGTTGATGATTGCTCTTCAGATATTTGGAGGGAAAATGGAGTTCACTGGTTTTCGTC 304
Query 350 TTCTCTCAGTCGCCATTCTTGACATGCTAAATGTGACTCTAATTTCGGCGGCAGCAAACG 409
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 TTCTCTCTGTCGCCATTCTTGACATGCTAAATGTGACTCTAATTTCGGCGGCAGCAAACG 364
Query 410 CGGCGGCGTTCATGGCGGAGGTAGGAAAGAACGGGAACAAACACGCGAGATGGGACAAAA 469
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 CGGCGGCGTTCATGGCTGAGGTAGGAAAGAACGGGAACAAACACGCGAGATGGGACAAAA 424
Query 470 TCTGTGATAGATTCGCCACTTACTGTGATCACGGCGCCGGAGCATTAATCGCCGCATTCG 529
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 425 TCTGTGACAGATTCGCCACTTACTGTGATCACGGCGCCGGAGCATTAATCGCCGCCTTCG 484
Query 530 CCGGCGTAATCCTTATGCTCATCATCTCCGCCGCGTCAATCTCTCGTCTCGTCCAACCTA 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 485 CCGGCGTAATCCTTATGCTCATCATCTCCGCCGCGTCAATCTCTCGTCTCGTCCAGCAAA 544
Query 590 ATAAATGCTGCTCCACCACCGCATCTCCCTCGGTCGTCCCCTGA 633
||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 545 ATAAATGCTGCTCCACCACCGCATCTCCCTCCGTCGTCCCCTGA 588
> Ahg492822 jgi|Araly1|492822|fgenesh2_kg.7__2255__AT4G20390.1
Length=766
Score = 363 bits (196), Expect = 2e-99
Identities = 397/493 (81%), Gaps = 18/493 (4%)
Strand=Plus/Plus
Query 79 AAGAGCTGCAAAATACTCTTAGGGCTGAGATTACTTGCCTTC-TCAGCCACGTTATCTGC 137
|||||||| ||| ||||||| ||||||||| || |||| ||| | || || ||| ||||
Sbjct 73 AAGAGCTGGAAACTACTCTTGGGGCTGAGAATATTTGCATTCAT-GGCTACTTTAGCTGC 131
Query 138 AGCTATTGTAATGGGACTCAACAAAGAGACAAAGACTTTTATTGTGGGCA-AAGTTGGAA 196
||| ||||||||| ||| ||||||||||||||||| || |||||| || | |||| |
Sbjct 132 AGCCATTGTAATGTCACTAAACAAAGAGACAAAGACCTTGGTTGTGGCCACCA-TTGGTA 190
Query 197 ATAC-TCCAATTC-AAGCTACTTTTACTGCTAAG-TTCGACCACACACCAGCTTTTGTGT 253
| | ||| | || |||| ||||| || |||||| ||| | ||||||| || |||||||
Sbjct 191 CT-CTTCCTA-TCAAAGCCACTTTAACCGCTAAGTTTC-AGGACACACCGGCCTTTGTGT 247
Query 254 T-TTTCG-TAGTAGCTAATGCAATGGTGAGCTTCCACAACTTGTTGATGATTGCTCTTCA 311
| ||| | || ||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 248 TCTTT-GTTA-TAGCTAATGTAATGGTGAGCTTCCACAACTTGTTGATGATTGTTCTTCA 305
Query 312 GATATTTGGAGGGAAAATGGAGTTCACTGGTTTTCGGCTTCTCTC-AGTCGCCATTCTTG 370
||| ||| | ||||| |||||| || ||| | || || ||||| | |||||||||| |
Sbjct 306 GATTTTTAGCCGGAAACTGGAGTACAAAGGTGTCCGTCTCCTCTCTA-TCGCCATTCTAG 364
Query 371 ACATGCTAAATGTGACTCTAATTTCGGCGGCAGCAAACGCGGCGGCGTTCATGGCGGAGG 430
|||||||||| | |||||| | || || || ||||||||||||| ||| ||||||||
Sbjct 365 ACATGCTAAACGCAACTCTAGTATCTGCTGCTGCAAACGCGGCGGTATTCGTGGCGGAGT 424
Query 431 TAGGAAAGAACGGGAACAAACACGCGA-GATGGGACAAAATCTGTGATAGATTCGCCACT 489
| || ||||| || ||||| ||||| | | ||| ||||| |||| || || || ||||||
Sbjct 425 TGGGGAAGAATGGAAACAAGCACGCCAAG-TGGAACAAAGTCTGCGACAGGTTTGCCACT 483
Query 490 TACTGTGATCACGGCGCCGGAGCATTAATCGCCGCATTCGCCGGCGTAATCCTTATGCTC 549
||||||||||||||||| |||||| | ||||||||||||||||| || || || ||||||
Sbjct 484 TACTGTGATCACGGCGCTGGAGCACTCATCGCCGCATTCGCCGGAGTCATTCTAATGCTC 543
Query 550 ATCATCTCCGCCG 562
|| ||||| |||
Sbjct 544 CTCGTCTCCTCCG 556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31756389861
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5