BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G44550.1 Length=858 Score E Sequences producing significant alignments: (Bits) Value Ahg915751 jgi|Araly1|915751|Al_scaffold_0008_502 968 0.0 Ahg492822 jgi|Araly1|492822|fgenesh2_kg.7__2255__AT4G20390.1 363 2e-99 > Ahg915751 jgi|Araly1|915751|Al_scaffold_0008_502 Length=588 Score = 968 bits (524), Expect = 0.0 Identities = 564/584 (97%), Gaps = 0/584 (0%) Strand=Plus/Plus Query 50 CAAAGCTTACATTGGCTGCTACGAGCGGTAAGAGCTGCAAAATACTCTTAGGGCTGAGAT 109 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5 CAAAGCTCGCATTGGCTGCTACGAGCGGTAAGAGCTGCAAAATACTCTTAGGGCTGAGAT 64 Query 110 TACTTGCCTTCTCAGCCACGTTATCTGCAGCTATTGTAATGGGACTCAACAAAGAGACAA 169 ||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||| Sbjct 65 TACTTGCCTTCTCAGCCACGTTATCTGCAGCCATTGTAATGGGATTGAACAAAGAGACAG 124 Query 170 AGACTTTTATTGTGGGCAAAGTTGGAAATACTCCAATTCAAGCTACTTTTACTGCTAAGT 229 |||||||| ||||||| ||||||||||||||||||||| |||||||||| |||||||||| Sbjct 125 AGACTTTTGTTGTGGGAAAAGTTGGAAATACTCCAATTAAAGCTACTTTCACTGCTAAGT 184 Query 230 TCGACCACACACCAGCTTTTGTGTTTTTCGTAGTAGCTAATGCAATGGTGAGCTTCCACA 289 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 185 TCGACCACACACCAGCTTTTGTGTTTTTCGTAGTGGCTAATGCAATGGTGAGCTTCCACA 244 Query 290 ACTTGTTGATGATTGCTCTTCAGATATTTGGAGGGAAAATGGAGTTCACTGGTTTTCGGC 349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 245 ACTTGTTGATGATTGCTCTTCAGATATTTGGAGGGAAAATGGAGTTCACTGGTTTTCGTC 304 Query 350 TTCTCTCAGTCGCCATTCTTGACATGCTAAATGTGACTCTAATTTCGGCGGCAGCAAACG 409 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 305 TTCTCTCTGTCGCCATTCTTGACATGCTAAATGTGACTCTAATTTCGGCGGCAGCAAACG 364 Query 410 CGGCGGCGTTCATGGCGGAGGTAGGAAAGAACGGGAACAAACACGCGAGATGGGACAAAA 469 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 365 CGGCGGCGTTCATGGCTGAGGTAGGAAAGAACGGGAACAAACACGCGAGATGGGACAAAA 424 Query 470 TCTGTGATAGATTCGCCACTTACTGTGATCACGGCGCCGGAGCATTAATCGCCGCATTCG 529 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 425 TCTGTGACAGATTCGCCACTTACTGTGATCACGGCGCCGGAGCATTAATCGCCGCCTTCG 484 Query 530 CCGGCGTAATCCTTATGCTCATCATCTCCGCCGCGTCAATCTCTCGTCTCGTCCAACCTA 589 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 485 CCGGCGTAATCCTTATGCTCATCATCTCCGCCGCGTCAATCTCTCGTCTCGTCCAGCAAA 544 Query 590 ATAAATGCTGCTCCACCACCGCATCTCCCTCGGTCGTCCCCTGA 633 ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 545 ATAAATGCTGCTCCACCACCGCATCTCCCTCCGTCGTCCCCTGA 588 > Ahg492822 jgi|Araly1|492822|fgenesh2_kg.7__2255__AT4G20390.1 Length=766 Score = 363 bits (196), Expect = 2e-99 Identities = 397/493 (81%), Gaps = 18/493 (4%) Strand=Plus/Plus Query 79 AAGAGCTGCAAAATACTCTTAGGGCTGAGATTACTTGCCTTC-TCAGCCACGTTATCTGC 137 |||||||| ||| ||||||| ||||||||| || |||| ||| | || || ||| |||| Sbjct 73 AAGAGCTGGAAACTACTCTTGGGGCTGAGAATATTTGCATTCAT-GGCTACTTTAGCTGC 131 Query 138 AGCTATTGTAATGGGACTCAACAAAGAGACAAAGACTTTTATTGTGGGCA-AAGTTGGAA 196 ||| ||||||||| ||| ||||||||||||||||| || |||||| || | |||| | Sbjct 132 AGCCATTGTAATGTCACTAAACAAAGAGACAAAGACCTTGGTTGTGGCCACCA-TTGGTA 190 Query 197 ATAC-TCCAATTC-AAGCTACTTTTACTGCTAAG-TTCGACCACACACCAGCTTTTGTGT 253 | | ||| | || |||| ||||| || |||||| ||| | ||||||| || ||||||| Sbjct 191 CT-CTTCCTA-TCAAAGCCACTTTAACCGCTAAGTTTC-AGGACACACCGGCCTTTGTGT 247 Query 254 T-TTTCG-TAGTAGCTAATGCAATGGTGAGCTTCCACAACTTGTTGATGATTGCTCTTCA 311 | ||| | || ||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 248 TCTTT-GTTA-TAGCTAATGTAATGGTGAGCTTCCACAACTTGTTGATGATTGTTCTTCA 305 Query 312 GATATTTGGAGGGAAAATGGAGTTCACTGGTTTTCGGCTTCTCTC-AGTCGCCATTCTTG 370 ||| ||| | ||||| |||||| || ||| | || || ||||| | |||||||||| | Sbjct 306 GATTTTTAGCCGGAAACTGGAGTACAAAGGTGTCCGTCTCCTCTCTA-TCGCCATTCTAG 364 Query 371 ACATGCTAAATGTGACTCTAATTTCGGCGGCAGCAAACGCGGCGGCGTTCATGGCGGAGG 430 |||||||||| | |||||| | || || || ||||||||||||| ||| |||||||| Sbjct 365 ACATGCTAAACGCAACTCTAGTATCTGCTGCTGCAAACGCGGCGGTATTCGTGGCGGAGT 424 Query 431 TAGGAAAGAACGGGAACAAACACGCGA-GATGGGACAAAATCTGTGATAGATTCGCCACT 489 | || ||||| || ||||| ||||| | | ||| ||||| |||| || || || |||||| Sbjct 425 TGGGGAAGAATGGAAACAAGCACGCCAAG-TGGAACAAAGTCTGCGACAGGTTTGCCACT 483 Query 490 TACTGTGATCACGGCGCCGGAGCATTAATCGCCGCATTCGCCGGCGTAATCCTTATGCTC 549 ||||||||||||||||| |||||| | ||||||||||||||||| || || || |||||| Sbjct 484 TACTGTGATCACGGCGCTGGAGCACTCATCGCCGCATTCGCCGGAGTCATTCTAATGCTC 543 Query 550 ATCATCTCCGCCG 562 || ||||| ||| Sbjct 544 CTCGTCTCCTCCG 556 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31756389861 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5