BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44555.1
Length=359
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915761 jgi|Araly1|915761|Al_scaffold_0008_512 440 3e-123
Ahg900212 jgi|Araly1|900212|Al_scaffold_0004_862 440 3e-123
Ahg915760 jgi|Araly1|915760|Al_scaffold_0008_511 429 6e-120
Ahg915759 jgi|Araly1|915759|Al_scaffold_0008_510 429 6e-120
Ahg887389 jgi|Araly1|887389|Al_scaffold_0588_2 429 6e-120
Ahg887388 jgi|Araly1|887388|Al_scaffold_0588_1 429 6e-120
Ahg915763 jgi|Araly1|915763|Al_scaffold_0008_514 425 8e-119
Ahg915764 jgi|Araly1|915764|Al_scaffold_0008_515 359 8e-99
> Ahg915761 jgi|Araly1|915761|Al_scaffold_0008_512
Length=369
Score = 440 bits (238), Expect = 3e-123
Identities = 329/371 (89%), Gaps = 14/371 (4%)
Strand=Plus/Plus
Query 1 ATGGCAATCAAAAACGTGATTTTTCTTC-TATCGATTGTATGCGTTGCAATGTCTGCAAA 59
||||| ||||||||||| |||||| || || || || ||||| ||||| ||||||||||
Sbjct 1 ATGGCTTTCAAAAACGTGTTTTTTC-TCTTAGCGGTTTTATGCATTGCACTGTCTGCAAA 59
Query 60 TGCTCAATTACCTCAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCCATTCC 119
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 60 TGCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTCC 119
Query 120 CGGTGTA-C-----TG---G-TATAACAAAATGTTT-ATCATCCTTTATGAATATTGCAG 168
||||||| | || | ||||||||||||||| | |||| |||||||||||| |||
Sbjct 120 CGGTGTACCAGGATTGCCTGATATAACAAAATGTTTGA-CATCTTTTATGAATATTCCAG 178
Query 169 GGTGTATCGCAGAGTTTTCACAATCTATACTCACTGGAAAGTTTGGCAACATAGGCCCTG 228
||||||||||||||||||| ||||||||||||| |||||||||||| |||||||| ||||
Sbjct 179 GGTGTATCGCAGAGTTTTCGCAATCTATACTCATTGGAAAGTTTGGAAACATAGGACCTG 238
Query 229 TTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAACTGTATTCCGCAACTTCCATTCAATC 288
||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 239 CTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAATC 298
Query 289 CATTTTTTCCTCCTCTGCTAAAGGAACAATGTTCAAAAACCGTTGGCGCAATTTCTCATA 348
|||||||||||||| ||||||||||||||||||||||||| ||||||||| || ||| ||
Sbjct 299 CATTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGGCGCACTTCCTCCTA 358
Query 349 CGAGAAAGTAG 359
| | |||||||
Sbjct 359 CTAAAAAGTAG 369
> Ahg900212 jgi|Araly1|900212|Al_scaffold_0004_862
Length=369
Score = 440 bits (238), Expect = 3e-123
Identities = 329/371 (89%), Gaps = 14/371 (4%)
Strand=Plus/Plus
Query 1 ATGGCAATCAAAAACGTGATTTTTCTTC-TATCGATTGTATGCGTTGCAATGTCTGCAAA 59
||||| ||||||||||| |||||| || || || || ||||| ||||| ||||||||||
Sbjct 1 ATGGCTTTCAAAAACGTGTTTTTTC-TCTTAGCGGTTTTATGCATTGCACTGTCTGCAAA 59
Query 60 TGCTCAATTACCTCAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCCATTCC 119
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 60 TGCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTCC 119
Query 120 CGGTGTA-C-----TG---G-TATAACAAAATGTTT-ATCATCCTTTATGAATATTGCAG 168
||||||| | || | ||||||||||||||| | ||| |||||||||||| |||
Sbjct 120 CGGTGTACCAGGATTGCCTGATATAACAAAATGTTTGA-CATATTTTATGAATATTCCAG 178
Query 169 GGTGTATCGCAGAGTTTTCACAATCTATACTCACTGGAAAGTTTGGCAACATAGGCCCTG 228
||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||
Sbjct 179 GGTGTATCGCAGAGTTTTCGCAATCTATACTCATTGGAAAGTTTGGAAACATAGGCCCTG 238
Query 229 TTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAACTGTATTCCGCAACTTCCATTCAATC 288
||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 239 CTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAATC 298
Query 289 CATTTTTTCCTCCTCTGCTAAAGGAACAATGTTCAAAAACCGTTGGCGCAATTTCTCATA 348
|||||||||||||| ||||||||||||||||||||||||| ||||||||| || ||| ||
Sbjct 299 CATTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGGCGCACTTCCTCCTA 358
Query 349 CGAGAAAGTAG 359
| | |||||||
Sbjct 359 CCAAAAAGTAG 369
> Ahg915760 jgi|Araly1|915760|Al_scaffold_0008_511
Length=369
Score = 429 bits (232), Expect = 6e-120
Identities = 325/369 (88%), Gaps = 10/369 (3%)
Strand=Plus/Plus
Query 1 ATGGCAATCAAAAACGTGATTTTTCTTCTATCGATTGTATGCGTTGCAATGTCTGCAAAT 60
||||| ||||||||||||||||||| || || || ||||| ||||| |||||||||||
Sbjct 1 ATGGCTTTCAAAAACGTGATTTTTCTACTGGCGGTTTTATGCATTGCACTGTCTGCAAAT 60
Query 61 GCTCAATTACCTCAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCCATTCCC 120
||||||||||| |||||||||||||||||||||||||||||| |||||||||| | ||||
Sbjct 61 GCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTTCATTCCTACCGAGTCCC 120
Query 121 -G-GT-----G--TA-CTGGTATAACAAAATGTTTATCATCCTTTATGAATATTGCAGGG 170
| || | || ||| ||||||||||||||| ||||| |||||||||||| |||||
Sbjct 121 GGTGTACCAGGATTACCTGATATAACAAAATGTTTGTCATCTTTTATGAATATTCCAGGG 180
Query 171 TGTATCGCAGAGTTTTCACAATCTATACTCACTGGAAAGTTTGGCAACATAGGCCCTGTT 230
||||||||||||||||| ||||||||||||| ||||||||| || ||||||||||||| |
Sbjct 181 TGTATCGCAGAGTTTTCGCAATCTATACTCATTGGAAAGTTCGGAAACATAGGCCCTGCT 240
Query 231 TGTTGCAAAGCAATTTTGGAAGCTGAAACCAACTGTATTCCGCAACTTCCATTCAATCCA 290
|||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 241 TGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAATCCA 300
Query 291 TTTTTTCCTCCTCTGCTAAAGGAACAATGTTCAAAAACCGTTGGCGCAATTTCTCATACG 350
|||||||||||| ||||||||||||| ||||||||||| ||||| ||| || ||| |||
Sbjct 301 TTTTTTCCTCCTATGCTAAAGGAACAGTGTTCAAAAACTGTTGGTGCACTTCCTCCTACC 360
Query 351 AGAAAGTAG 359
| |||||||
Sbjct 361 AAAAAGTAG 369
> Ahg915759 jgi|Araly1|915759|Al_scaffold_0008_510
Length=369
Score = 429 bits (232), Expect = 6e-120
Identities = 327/371 (88%), Gaps = 14/371 (4%)
Strand=Plus/Plus
Query 1 ATGGCAATCAAAAACGTGATTTTTCTTC-TATCGATTGTATGCGTTGCAATGTCTGCAAA 59
||||| |||||||||||||||||| || || || || ||||| ||||| ||||||||||
Sbjct 1 ATGGCTTTCAAAAACGTGATTTTTC-TCTTAGCGGTTTTATGCATTGCACTGTCTGCAAA 59
Query 60 TGCTCAATTACCTCAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCCATTCC 119
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 60 TGCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTCC 119
Query 120 C-G-GT-----G--TAC-TGGTATAACAAAATGTTT-ATCATCCTTTATGAATATTGCAG 168
| | || | ||| || ||||||||||||||| | |||| |||||||||||| |||
Sbjct 120 CGGTGTACCAGGATTACATGATATAACAAAATGTTTGA-CATCTTTTATGAATATTCCAG 178
Query 169 GGTGTATCGCAGAGTTTTCACAATCTATACTCACTGGAAAGTTTGGCAACATAGGCCCTG 228
||||||||||||||||||| ||||||||||||| ||||||||| || |||||||||||||
Sbjct 179 GGTGTATCGCAGAGTTTTCGCAATCTATACTCATTGGAAAGTTCGGAAACATAGGCCCTG 238
Query 229 TTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAACTGTATTCCGCAACTTCCATTCAATC 288
||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 239 CTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAATC 298
Query 289 CATTTTTTCCTCCTCTGCTAAAGGAACAATGTTCAAAAACCGTTGGCGCAATTTCTCATA 348
|||||||||||||| ||||||||||||| ||||||||||| ||||| ||| || ||| ||
Sbjct 299 CATTTTTTCCTCCTATGCTAAAGGAACAGTGTTCAAAAACTGTTGGTGCACTTCCTCCTA 358
Query 349 CGAGAAAGTAG 359
| | |||||||
Sbjct 359 CCAAAAAGTAG 369
> Ahg887389 jgi|Araly1|887389|Al_scaffold_0588_2
Length=369
Score = 429 bits (232), Expect = 6e-120
Identities = 325/369 (88%), Gaps = 10/369 (3%)
Strand=Plus/Plus
Query 1 ATGGCAATCAAAAACGTGATTTTTCTTCTATCGATTGTATGCGTTGCAATGTCTGCAAAT 60
||||| ||||||||||||||||||| || || || ||||| ||||| |||||||||||
Sbjct 1 ATGGCCTTCAAAAACGTGATTTTTCTACTGGCGGTTTTATGCATTGCACTGTCTGCAAAT 60
Query 61 GCTCAATTACCTCAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCCATTCCC 120
||||||||||| |||||||||||||||||||||||||||||| |||||||||| | ||||
Sbjct 61 GCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTTCATTCCTACCGAGTCCC 120
Query 121 -G-GT-----G--TA-CTGGTATAACAAAATGTTTATCATCCTTTATGAATATTGCAGGG 170
| || | || ||| ||||||||||||||| ||||| |||||||||||| |||||
Sbjct 121 GGTGTACCAGGATTACCTGATATAACAAAATGTTTGTCATCTTTTATGAATATTCCAGGG 180
Query 171 TGTATCGCAGAGTTTTCACAATCTATACTCACTGGAAAGTTTGGCAACATAGGCCCTGTT 230
||||||||||||||||| ||||||||||||| ||||||||| || ||||||||||||| |
Sbjct 181 TGTATCGCAGAGTTTTCGCAATCTATACTCATTGGAAAGTTCGGAAACATAGGCCCTGCT 240
Query 231 TGTTGCAAAGCAATTTTGGAAGCTGAAACCAACTGTATTCCGCAACTTCCATTCAATCCA 290
|||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 241 TGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAATCCA 300
Query 291 TTTTTTCCTCCTCTGCTAAAGGAACAATGTTCAAAAACCGTTGGCGCAATTTCTCATACG 350
|||||||||||| ||||||||||||| ||||||||||| ||||| ||| || ||| |||
Sbjct 301 TTTTTTCCTCCTATGCTAAAGGAACAGTGTTCAAAAACTGTTGGTGCACTTCCTCCTACC 360
Query 351 AGAAAGTAG 359
| |||||||
Sbjct 361 AAAAAGTAG 369
> Ahg887388 jgi|Araly1|887388|Al_scaffold_0588_1
Length=369
Score = 429 bits (232), Expect = 6e-120
Identities = 326/370 (88%), Gaps = 12/370 (3%)
Strand=Plus/Plus
Query 1 ATGGCAATCAAAAACGTGATTTTTCTTCTATCGATTGTATGCGTTGCAATGTCTGCAAAT 60
||||| ||||||||||||||||||| ||| || || ||||| ||||| |||||||||||
Sbjct 1 ATGGCTTTCAAAAACGTGATTTTTCTCCTAGCGGTTCTATGCATTGCACTGTCTGCAAAT 60
Query 61 GCTCAATTACCTCAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCCA-T-TC 118
||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 61 GCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTCTC 120
Query 119 ------CC-GG-TGTA-CTGGTATAACAAAATGTTTATCATCCTTTATGAATATTGCAGG 169
|| || | || ||| ||||||||||||||| ||||| |||||||||||| ||||
Sbjct 121 GGTGTACCAGGAT-TACCTGATATAACAAAATGTTTGTCATCTTTTATGAATATTCCAGG 179
Query 170 GTGTATCGCAGAGTTTTCACAATCTATACTCACTGGAAAGTTTGGCAACATAGGCCCTGT 229
|||||||||||||||||| ||||| ||||||| ||||||||| || |||||||||||||
Sbjct 180 GTGTATCGCAGAGTTTTCGCAATCCATACTCATTGGAAAGTTCGGAAACATAGGCCCTGC 239
Query 230 TTGTTGCAAAGCAATTTTGGAAGCTGAAACCAACTGTATTCCGCAACTTCCATTCAATCC 289
||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 240 TTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAATCC 299
Query 290 ATTTTTTCCTCCTCTGCTAAAGGAACAATGTTCAAAAACCGTTGGCGCAATTTCTCATAC 349
||||||||||||| ||||||||||||| ||||||||||| ||||| ||| || ||| |||
Sbjct 300 ATTTTTTCCTCCTATGCTAAAGGAACAGTGTTCAAAAACTGTTGGTGCACTTCCTCCTAC 359
Query 350 GAGAAAGTAG 359
| |||||||
Sbjct 360 CAAAAAGTAG 369
> Ahg915763 jgi|Araly1|915763|Al_scaffold_0008_514
Length=357
Score = 425 bits (230), Expect = 8e-119
Identities = 316/356 (89%), Gaps = 12/356 (3%)
Strand=Plus/Plus
Query 1 ATGGCAATCAAAAACGTGATTTTTCTTCTATCGATTGTATGCGTTGCAATGTCTGCAAAT 60
||||| ||||||| ||||||||||| ||| || || ||||| ||||| |||||||||||
Sbjct 1 ATGGCTTTCAAAAATGTGATTTTTCTCCTAGCGGTTTTATGCATTGCACTGTCTGCAAAT 60
Query 61 GCTCAATTACCTCAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCCATTCCC 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 61 GCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTCCC 120
Query 121 -G-GT-----G--TA-CTGGTATAACAAAATGTTT-ATCATCCTTTATGAATATTGCAGG 169
| || | || ||| ||||||||||||||| | |||| |||||||||||| ||||
Sbjct 121 GGTGTACCAGGATTACCTGATATAACAAAATGTTTGA-CATCTTTTATGAATATTCCAGG 179
Query 170 GTGTATCGCAGAGTTTTCACAATCTATACTCACTGGAAAGTTTGGCAACATAGGCCCTGT 229
|||||||||||||||||| ||||||||||||| ||||||||| || |||||||| ||||
Sbjct 180 GTGTATCGCAGAGTTTTCGCAATCTATACTCATTGGAAAGTTCGGAAACATAGGTCCTGC 239
Query 230 TTGTTGCAAAGCAATTTTGGAAGCTGAAACCAACTGTATTCCGCAACTTCCATTCAATCC 289
||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 240 TTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAATCC 299
Query 290 ATTTTTTCCTCCTCTGCTAAAGGAACAATGTTCAAAAACCGTTGGCGCAATTTCTC 345
||||||||||||| ||||||||||||||||||||||||| ||||||||| || |||
Sbjct 300 ATTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGGCGCACTTCCTC 355
> Ahg915764 jgi|Araly1|915764|Al_scaffold_0008_515
Length=372
Score = 359 bits (194), Expect = 8e-99
Identities = 318/375 (85%), Gaps = 19/375 (5%)
Strand=Plus/Plus
Query 1 ATGGCAATCAAAAACGTGATTTTTCTTCTATCGATTGTATGCGTTGCAATGTCTGCAAAT 60
||||| ||||||||||||||||||| || || || ||||| ||||| |||||||||||
Sbjct 1 ATGGCTTTCAAAAACGTGATTTTTCTACTGGCGGTTTTATGCATTGCACTGTCTGCAAAT 60
Query 61 GCTCAATTACCTCAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCCATTCCC 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 61 GCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTCCC 120
Query 121 -G-GT-----G--TA-CTGGTATAACAAAATGTTTATCATCCTTTATGAATATTGCAGGG 170
| || | || ||| ||||||||||||||| ||||| |||||||||||| |||||
Sbjct 121 GGTGTACCAGGATTACCTGATATAACAAAATGTTTGTCATCTTTTATGAATATTCCAGGG 180
Query 171 TGTATCGCAGAGTTTT--CACAAT--CTATACT-CACTG-GAAAGTTTGGCAACATAGGC 224
|||||||||||||||| | | | | | | | ||||| | ||||| | ||||||||
Sbjct 181 TGTATCGCAGAGTTTTGGC-CGGTGGC-A-AATCCACTGCGCAAGTTCGTAAACATAGGT 237
Query 225 CCTGTTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAACTGTATTCCGCAACTTCCATTC 284
|||| ||||||||||||||||||||||||||||||||| || |||| ||||||||||||
Sbjct 238 CCTGCTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCTACAACTTCCATTC 297
Query 285 AATCCATTTTTTCCTCCTCTGCTAAAGGAACAATGTTCAAAAACCGTTGGCGCAATTTCT 344
|||||||||||||||||| |||| |||||||| ||||||||||| ||||||||| || ||
Sbjct 298 AATCCATTTTTTCCTCCTATGCTGAAGGAACAGTGTTCAAAAACTGTTGGCGCACTTCCT 357
Query 345 CATACGAGAAAGTAG 359
| ||| | |||||||
Sbjct 358 CCTACCAAAAAGTAG 372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12782122315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5