BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G44555.1 Length=359 Score E Sequences producing significant alignments: (Bits) Value Ahg915761 jgi|Araly1|915761|Al_scaffold_0008_512 440 3e-123 Ahg900212 jgi|Araly1|900212|Al_scaffold_0004_862 440 3e-123 Ahg915760 jgi|Araly1|915760|Al_scaffold_0008_511 429 6e-120 Ahg915759 jgi|Araly1|915759|Al_scaffold_0008_510 429 6e-120 Ahg887389 jgi|Araly1|887389|Al_scaffold_0588_2 429 6e-120 Ahg887388 jgi|Araly1|887388|Al_scaffold_0588_1 429 6e-120 Ahg915763 jgi|Araly1|915763|Al_scaffold_0008_514 425 8e-119 Ahg915764 jgi|Araly1|915764|Al_scaffold_0008_515 359 8e-99 > Ahg915761 jgi|Araly1|915761|Al_scaffold_0008_512 Length=369 Score = 440 bits (238), Expect = 3e-123 Identities = 329/371 (89%), Gaps = 14/371 (4%) Strand=Plus/Plus Query 1 ATGGCAATCAAAAACGTGATTTTTCTTC-TATCGATTGTATGCGTTGCAATGTCTGCAAA 59 ||||| ||||||||||| |||||| || || || || ||||| ||||| |||||||||| Sbjct 1 ATGGCTTTCAAAAACGTGTTTTTTC-TCTTAGCGGTTTTATGCATTGCACTGTCTGCAAA 59 Query 60 TGCTCAATTACCTCAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCCATTCC 119 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 60 TGCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTCC 119 Query 120 CGGTGTA-C-----TG---G-TATAACAAAATGTTT-ATCATCCTTTATGAATATTGCAG 168 ||||||| | || | ||||||||||||||| | |||| |||||||||||| ||| Sbjct 120 CGGTGTACCAGGATTGCCTGATATAACAAAATGTTTGA-CATCTTTTATGAATATTCCAG 178 Query 169 GGTGTATCGCAGAGTTTTCACAATCTATACTCACTGGAAAGTTTGGCAACATAGGCCCTG 228 ||||||||||||||||||| ||||||||||||| |||||||||||| |||||||| |||| Sbjct 179 GGTGTATCGCAGAGTTTTCGCAATCTATACTCATTGGAAAGTTTGGAAACATAGGACCTG 238 Query 229 TTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAACTGTATTCCGCAACTTCCATTCAATC 288 ||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||| Sbjct 239 CTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAATC 298 Query 289 CATTTTTTCCTCCTCTGCTAAAGGAACAATGTTCAAAAACCGTTGGCGCAATTTCTCATA 348 |||||||||||||| ||||||||||||||||||||||||| ||||||||| || ||| || Sbjct 299 CATTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGGCGCACTTCCTCCTA 358 Query 349 CGAGAAAGTAG 359 | | ||||||| Sbjct 359 CTAAAAAGTAG 369 > Ahg900212 jgi|Araly1|900212|Al_scaffold_0004_862 Length=369 Score = 440 bits (238), Expect = 3e-123 Identities = 329/371 (89%), Gaps = 14/371 (4%) Strand=Plus/Plus Query 1 ATGGCAATCAAAAACGTGATTTTTCTTC-TATCGATTGTATGCGTTGCAATGTCTGCAAA 59 ||||| ||||||||||| |||||| || || || || ||||| ||||| |||||||||| Sbjct 1 ATGGCTTTCAAAAACGTGTTTTTTC-TCTTAGCGGTTTTATGCATTGCACTGTCTGCAAA 59 Query 60 TGCTCAATTACCTCAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCCATTCC 119 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 60 TGCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTCC 119 Query 120 CGGTGTA-C-----TG---G-TATAACAAAATGTTT-ATCATCCTTTATGAATATTGCAG 168 ||||||| | || | ||||||||||||||| | ||| |||||||||||| ||| Sbjct 120 CGGTGTACCAGGATTGCCTGATATAACAAAATGTTTGA-CATATTTTATGAATATTCCAG 178 Query 169 GGTGTATCGCAGAGTTTTCACAATCTATACTCACTGGAAAGTTTGGCAACATAGGCCCTG 228 ||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| Sbjct 179 GGTGTATCGCAGAGTTTTCGCAATCTATACTCATTGGAAAGTTTGGAAACATAGGCCCTG 238 Query 229 TTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAACTGTATTCCGCAACTTCCATTCAATC 288 ||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||| Sbjct 239 CTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAATC 298 Query 289 CATTTTTTCCTCCTCTGCTAAAGGAACAATGTTCAAAAACCGTTGGCGCAATTTCTCATA 348 |||||||||||||| ||||||||||||||||||||||||| ||||||||| || ||| || Sbjct 299 CATTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGGCGCACTTCCTCCTA 358 Query 349 CGAGAAAGTAG 359 | | ||||||| Sbjct 359 CCAAAAAGTAG 369 > Ahg915760 jgi|Araly1|915760|Al_scaffold_0008_511 Length=369 Score = 429 bits (232), Expect = 6e-120 Identities = 325/369 (88%), Gaps = 10/369 (3%) Strand=Plus/Plus Query 1 ATGGCAATCAAAAACGTGATTTTTCTTCTATCGATTGTATGCGTTGCAATGTCTGCAAAT 60 ||||| ||||||||||||||||||| || || || ||||| ||||| ||||||||||| Sbjct 1 ATGGCTTTCAAAAACGTGATTTTTCTACTGGCGGTTTTATGCATTGCACTGTCTGCAAAT 60 Query 61 GCTCAATTACCTCAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCCATTCCC 120 ||||||||||| |||||||||||||||||||||||||||||| |||||||||| | |||| Sbjct 61 GCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTTCATTCCTACCGAGTCCC 120 Query 121 -G-GT-----G--TA-CTGGTATAACAAAATGTTTATCATCCTTTATGAATATTGCAGGG 170 | || | || ||| ||||||||||||||| ||||| |||||||||||| ||||| Sbjct 121 GGTGTACCAGGATTACCTGATATAACAAAATGTTTGTCATCTTTTATGAATATTCCAGGG 180 Query 171 TGTATCGCAGAGTTTTCACAATCTATACTCACTGGAAAGTTTGGCAACATAGGCCCTGTT 230 ||||||||||||||||| ||||||||||||| ||||||||| || ||||||||||||| | Sbjct 181 TGTATCGCAGAGTTTTCGCAATCTATACTCATTGGAAAGTTCGGAAACATAGGCCCTGCT 240 Query 231 TGTTGCAAAGCAATTTTGGAAGCTGAAACCAACTGTATTCCGCAACTTCCATTCAATCCA 290 |||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| Sbjct 241 TGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAATCCA 300 Query 291 TTTTTTCCTCCTCTGCTAAAGGAACAATGTTCAAAAACCGTTGGCGCAATTTCTCATACG 350 |||||||||||| ||||||||||||| ||||||||||| ||||| ||| || ||| ||| Sbjct 301 TTTTTTCCTCCTATGCTAAAGGAACAGTGTTCAAAAACTGTTGGTGCACTTCCTCCTACC 360 Query 351 AGAAAGTAG 359 | ||||||| Sbjct 361 AAAAAGTAG 369 > Ahg915759 jgi|Araly1|915759|Al_scaffold_0008_510 Length=369 Score = 429 bits (232), Expect = 6e-120 Identities = 327/371 (88%), Gaps = 14/371 (4%) Strand=Plus/Plus Query 1 ATGGCAATCAAAAACGTGATTTTTCTTC-TATCGATTGTATGCGTTGCAATGTCTGCAAA 59 ||||| |||||||||||||||||| || || || || ||||| ||||| |||||||||| Sbjct 1 ATGGCTTTCAAAAACGTGATTTTTC-TCTTAGCGGTTTTATGCATTGCACTGTCTGCAAA 59 Query 60 TGCTCAATTACCTCAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCCATTCC 119 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 60 TGCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTCC 119 Query 120 C-G-GT-----G--TAC-TGGTATAACAAAATGTTT-ATCATCCTTTATGAATATTGCAG 168 | | || | ||| || ||||||||||||||| | |||| |||||||||||| ||| Sbjct 120 CGGTGTACCAGGATTACATGATATAACAAAATGTTTGA-CATCTTTTATGAATATTCCAG 178 Query 169 GGTGTATCGCAGAGTTTTCACAATCTATACTCACTGGAAAGTTTGGCAACATAGGCCCTG 228 ||||||||||||||||||| ||||||||||||| ||||||||| || ||||||||||||| Sbjct 179 GGTGTATCGCAGAGTTTTCGCAATCTATACTCATTGGAAAGTTCGGAAACATAGGCCCTG 238 Query 229 TTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAACTGTATTCCGCAACTTCCATTCAATC 288 ||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||| Sbjct 239 CTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAATC 298 Query 289 CATTTTTTCCTCCTCTGCTAAAGGAACAATGTTCAAAAACCGTTGGCGCAATTTCTCATA 348 |||||||||||||| ||||||||||||| ||||||||||| ||||| ||| || ||| || Sbjct 299 CATTTTTTCCTCCTATGCTAAAGGAACAGTGTTCAAAAACTGTTGGTGCACTTCCTCCTA 358 Query 349 CGAGAAAGTAG 359 | | ||||||| Sbjct 359 CCAAAAAGTAG 369 > Ahg887389 jgi|Araly1|887389|Al_scaffold_0588_2 Length=369 Score = 429 bits (232), Expect = 6e-120 Identities = 325/369 (88%), Gaps = 10/369 (3%) Strand=Plus/Plus Query 1 ATGGCAATCAAAAACGTGATTTTTCTTCTATCGATTGTATGCGTTGCAATGTCTGCAAAT 60 ||||| ||||||||||||||||||| || || || ||||| ||||| ||||||||||| Sbjct 1 ATGGCCTTCAAAAACGTGATTTTTCTACTGGCGGTTTTATGCATTGCACTGTCTGCAAAT 60 Query 61 GCTCAATTACCTCAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCCATTCCC 120 ||||||||||| |||||||||||||||||||||||||||||| |||||||||| | |||| Sbjct 61 GCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTTCATTCCTACCGAGTCCC 120 Query 121 -G-GT-----G--TA-CTGGTATAACAAAATGTTTATCATCCTTTATGAATATTGCAGGG 170 | || | || ||| ||||||||||||||| ||||| |||||||||||| ||||| Sbjct 121 GGTGTACCAGGATTACCTGATATAACAAAATGTTTGTCATCTTTTATGAATATTCCAGGG 180 Query 171 TGTATCGCAGAGTTTTCACAATCTATACTCACTGGAAAGTTTGGCAACATAGGCCCTGTT 230 ||||||||||||||||| ||||||||||||| ||||||||| || ||||||||||||| | Sbjct 181 TGTATCGCAGAGTTTTCGCAATCTATACTCATTGGAAAGTTCGGAAACATAGGCCCTGCT 240 Query 231 TGTTGCAAAGCAATTTTGGAAGCTGAAACCAACTGTATTCCGCAACTTCCATTCAATCCA 290 |||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| Sbjct 241 TGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAATCCA 300 Query 291 TTTTTTCCTCCTCTGCTAAAGGAACAATGTTCAAAAACCGTTGGCGCAATTTCTCATACG 350 |||||||||||| ||||||||||||| ||||||||||| ||||| ||| || ||| ||| Sbjct 301 TTTTTTCCTCCTATGCTAAAGGAACAGTGTTCAAAAACTGTTGGTGCACTTCCTCCTACC 360 Query 351 AGAAAGTAG 359 | ||||||| Sbjct 361 AAAAAGTAG 369 > Ahg887388 jgi|Araly1|887388|Al_scaffold_0588_1 Length=369 Score = 429 bits (232), Expect = 6e-120 Identities = 326/370 (88%), Gaps = 12/370 (3%) Strand=Plus/Plus Query 1 ATGGCAATCAAAAACGTGATTTTTCTTCTATCGATTGTATGCGTTGCAATGTCTGCAAAT 60 ||||| ||||||||||||||||||| ||| || || ||||| ||||| ||||||||||| Sbjct 1 ATGGCTTTCAAAAACGTGATTTTTCTCCTAGCGGTTCTATGCATTGCACTGTCTGCAAAT 60 Query 61 GCTCAATTACCTCAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCCA-T-TC 118 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | || Sbjct 61 GCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTCTC 120 Query 119 ------CC-GG-TGTA-CTGGTATAACAAAATGTTTATCATCCTTTATGAATATTGCAGG 169 || || | || ||| ||||||||||||||| ||||| |||||||||||| |||| Sbjct 121 GGTGTACCAGGAT-TACCTGATATAACAAAATGTTTGTCATCTTTTATGAATATTCCAGG 179 Query 170 GTGTATCGCAGAGTTTTCACAATCTATACTCACTGGAAAGTTTGGCAACATAGGCCCTGT 229 |||||||||||||||||| ||||| ||||||| ||||||||| || ||||||||||||| Sbjct 180 GTGTATCGCAGAGTTTTCGCAATCCATACTCATTGGAAAGTTCGGAAACATAGGCCCTGC 239 Query 230 TTGTTGCAAAGCAATTTTGGAAGCTGAAACCAACTGTATTCCGCAACTTCCATTCAATCC 289 ||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| Sbjct 240 TTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAATCC 299 Query 290 ATTTTTTCCTCCTCTGCTAAAGGAACAATGTTCAAAAACCGTTGGCGCAATTTCTCATAC 349 ||||||||||||| ||||||||||||| ||||||||||| ||||| ||| || ||| ||| Sbjct 300 ATTTTTTCCTCCTATGCTAAAGGAACAGTGTTCAAAAACTGTTGGTGCACTTCCTCCTAC 359 Query 350 GAGAAAGTAG 359 | ||||||| Sbjct 360 CAAAAAGTAG 369 > Ahg915763 jgi|Araly1|915763|Al_scaffold_0008_514 Length=357 Score = 425 bits (230), Expect = 8e-119 Identities = 316/356 (89%), Gaps = 12/356 (3%) Strand=Plus/Plus Query 1 ATGGCAATCAAAAACGTGATTTTTCTTCTATCGATTGTATGCGTTGCAATGTCTGCAAAT 60 ||||| ||||||| ||||||||||| ||| || || ||||| ||||| ||||||||||| Sbjct 1 ATGGCTTTCAAAAATGTGATTTTTCTCCTAGCGGTTTTATGCATTGCACTGTCTGCAAAT 60 Query 61 GCTCAATTACCTCAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCCATTCCC 120 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 61 GCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTCCC 120 Query 121 -G-GT-----G--TA-CTGGTATAACAAAATGTTT-ATCATCCTTTATGAATATTGCAGG 169 | || | || ||| ||||||||||||||| | |||| |||||||||||| |||| Sbjct 121 GGTGTACCAGGATTACCTGATATAACAAAATGTTTGA-CATCTTTTATGAATATTCCAGG 179 Query 170 GTGTATCGCAGAGTTTTCACAATCTATACTCACTGGAAAGTTTGGCAACATAGGCCCTGT 229 |||||||||||||||||| ||||||||||||| ||||||||| || |||||||| |||| Sbjct 180 GTGTATCGCAGAGTTTTCGCAATCTATACTCATTGGAAAGTTCGGAAACATAGGTCCTGC 239 Query 230 TTGTTGCAAAGCAATTTTGGAAGCTGAAACCAACTGTATTCCGCAACTTCCATTCAATCC 289 ||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| Sbjct 240 TTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAATCC 299 Query 290 ATTTTTTCCTCCTCTGCTAAAGGAACAATGTTCAAAAACCGTTGGCGCAATTTCTC 345 ||||||||||||| ||||||||||||||||||||||||| ||||||||| || ||| Sbjct 300 ATTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGGCGCACTTCCTC 355 > Ahg915764 jgi|Araly1|915764|Al_scaffold_0008_515 Length=372 Score = 359 bits (194), Expect = 8e-99 Identities = 318/375 (85%), Gaps = 19/375 (5%) Strand=Plus/Plus Query 1 ATGGCAATCAAAAACGTGATTTTTCTTCTATCGATTGTATGCGTTGCAATGTCTGCAAAT 60 ||||| ||||||||||||||||||| || || || ||||| ||||| ||||||||||| Sbjct 1 ATGGCTTTCAAAAACGTGATTTTTCTACTGGCGGTTTTATGCATTGCACTGTCTGCAAAT 60 Query 61 GCTCAATTACCTCAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCCATTCCC 120 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 61 GCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTCCC 120 Query 121 -G-GT-----G--TA-CTGGTATAACAAAATGTTTATCATCCTTTATGAATATTGCAGGG 170 | || | || ||| ||||||||||||||| ||||| |||||||||||| ||||| Sbjct 121 GGTGTACCAGGATTACCTGATATAACAAAATGTTTGTCATCTTTTATGAATATTCCAGGG 180 Query 171 TGTATCGCAGAGTTTT--CACAAT--CTATACT-CACTG-GAAAGTTTGGCAACATAGGC 224 |||||||||||||||| | | | | | | | ||||| | ||||| | |||||||| Sbjct 181 TGTATCGCAGAGTTTTGGC-CGGTGGC-A-AATCCACTGCGCAAGTTCGTAAACATAGGT 237 Query 225 CCTGTTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAACTGTATTCCGCAACTTCCATTC 284 |||| ||||||||||||||||||||||||||||||||| || |||| |||||||||||| Sbjct 238 CCTGCTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCTACAACTTCCATTC 297 Query 285 AATCCATTTTTTCCTCCTCTGCTAAAGGAACAATGTTCAAAAACCGTTGGCGCAATTTCT 344 |||||||||||||||||| |||| |||||||| ||||||||||| ||||||||| || || Sbjct 298 AATCCATTTTTTCCTCCTATGCTGAAGGAACAGTGTTCAAAAACTGTTGGCGCACTTCCT 357 Query 345 CATACGAGAAAGTAG 359 | ||| | ||||||| Sbjct 358 CCTACCAAAAAGTAG 372 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12782122315 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5