BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44560.1
Length=971
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494532 jgi|Araly1|494532|fgenesh2_kg.8__348__AT5G44560.1 1336 0.0
Ahg887505 jgi|Araly1|887505|Al_scaffold_0066_3 1099 0.0
> Ahg494532 jgi|Araly1|494532|fgenesh2_kg.8__348__AT5G44560.1
Length=889
Score = 1336 bits (723), Expect = 0.0
Identities = 830/880 (94%), Gaps = 14/880 (2%)
Strand=Plus/Plus
Query 93 TCTCGATTTGAGAAGTGAGAAGAGAAATCGCCATGAACATTTTCAAGAAGAAGACCACTC 152
||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 23 TCTCGATTTGAGAAGAGAGAAGAGAAATCGCCATGAACATCTTCAGGAAGAAGACCACTC 82
Query 153 CCAAAGATGCTCTTCGTACTAGTAAGAGAGAAATGGCTGTTGCTACTCGAGGTATCGAAC 212
||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 83 CCAAAGATGCTCTTCGTACCAGTAAGAGAGAAATGGCTGTGGCTACACGAGGTATCGAAC 142
Query 213 GGGAGATTACATCTCTTCAACTAGAGGAGAAGAGACTAGTTGCAGAAATCAAGAAAACAG 272
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 143 GGGAGATTACATCTCTTCAACTAGAGGAGAAGAGACTAGTTGCAGAGATCAAGAAAACAG 202
Query 273 CTAAGACTGGAAATGAGGCTGCCACAAAGATTTTAGCTCGTCAACTTGTTCGATTGAGGC 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 CTAAGACTGGAAATGAGGCTGCCACAAAGATTTTAGCTCGTCAACTTGTTCGATTGAGGC 262
Query 333 AACAGATTACCAACTTACAAGGAAGCCGTGCTCAGATTAGGGGTGTAACAACTCATACAC 392
||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||
Sbjct 263 AACAGATTACCAACTTACAGGGAAGCCGTGCTCAAATTAGGGGTGTGACGACTCATACAC 322
Query 393 AGGCTCTGTATGCCAGCACTTCGATTTCATCTGGTATGAAAGGTGCTACCAAAGCTATGG 452
|||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct 323 AGGCTCTGTATGCCAGCACTTCAATATCATCTGGCATGAAAGGTGCTACCAAAGCTATGG 382
Query 453 TTGCAATGAACAAGCAAATGGCACCAACGAAACAAGCCAAGGTGATTAAAGATTTCCAAA 512
||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| |
Sbjct 383 TTGCAATGAACAAGCAAATGGCACCCACTAAACAAGCCAAGGTGATTAAGGATTTCCAGA 442
Query 513 AGCAGTCGGCACAGCTAGACATGACGATAGAGATGATGTCAGAGGCAATTGATGAAACAC 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 AGCAGTCGGCACAGCTAGACATGACGATAGAGATGATGTCAGAGGCAATTGATGAAACAC 502
Query 573 TTGACAAAGATGAGGCTGAAGAAGAAACAGAAGATCTCACTAACCAGGTTCTTGATGAGA 632
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 503 TTGACAAAGATGAGGCTGAAGAAGAAACCGAAGATCTCACTAACCAAGTTCTTGATGAGA 562
Query 633 TTGGTGTTGGTGTTGCATCTCAGTTATCTTCAGCTCCAAAAGGTCGGATTGCTACGAAAA 692
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||
Sbjct 563 TTGGTGTTGGTGTTGCATCACAGCTATCTTCAGCTCCAAAAGGTCGGATTGCTACAAAAA 622
Query 693 CCGCAGCTCCTCCCGCTTCCACTGCAGCTACTAACAAGAACTCTGAATCAAGTGAAGTGG 752
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 623 CCGCAGCTCCTCCCGCTTCCACTGCAGCAACTAAAAAGAACTCTGAATCAAGTGAAGTGG 682
Query 753 ATGAGCTTGAGAAGAGGTTGGCTTCGCTACGACGAATCTGAGATTTATGAAAAACAAAGA 812
|||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct 683 ATGAGCTTGAGAAGAGGTTGGCTTCGCTTCGACGAATCTGAGATGTATGAAAA-----GA 737
Query 813 AAGAAGAGAGCAGCTTCCttt-tttttGTTATCTCTGTATAAATCTGCTGAAACTTAAGC 871
|| | ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 738 --GA-G----CAGCTTCCTTTCTTTTTGTTATCTCTGTATAAATCTGCTGAAACTTAAGC 790
Query 872 TGTTTGATATTAAGATTGGCCATCAGAAAACTATTAAGGCTTTTTAAGAAATGAAGAAGA 931
||||||||| |||||||| ||||||||||||| |||||||||||||||| | |||||
Sbjct 791 TGTTTGATACTAAGATTGATCATCAGAAAACTAA-AAGGCTTTTTAAGAAAAGTTGAAGA 849
Query 932 CATGTATACACATATTTTATTATAGATAGTTCCTCTACGT 971
||||||||||||||||||| || |||||||||||||||||
Sbjct 850 CATGTATACACATATTTTACTAAAGATAGTTCCTCTACGT 889
> Ahg887505 jgi|Araly1|887505|Al_scaffold_0066_3
Length=672
Score = 1099 bits (595), Expect = 0.0
Identities = 647/672 (96%), Gaps = 3/672 (0%)
Strand=Plus/Plus
Query 125 ATGAACATTTTCAAGAAGAAGACCACTCCCAAAGATGCTCTTCGTACTAGTAAGAGAGAA 184
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGAACATCTTCAAGAAGAAGACCACTCCCAAAGATGCTCTTCGTACCAGTAAGAGAGAA 60
Query 185 ATGGCTGTTGCTACTCGAGGTATCGAACGGGAGATTACATCTCTTCAACTAGAGGAGAAG 244
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATGGCTGTGGCTACACGAGGTATCGAACGGGAGATTACATCTCTTCAACTAGAGGAGAAG 120
Query 245 AGACTAGTTGCAGAAATCAAGAAAACAGCTAAGACTGGAAATGAGGCTGCCACAAAGATT 304
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGACTAGTTGCAGAGATCAAGAAAACAGCTAAGACTGGAAATGAGGCTGCCACAAAGATT 180
Query 305 TTAGCTCGTCAACTTGTTCGATTGAGGCAACAGATTACCAACTTACAAGGAAGCCGTGCT 364
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 181 TTAGCTCGTCAACTTGTTCGATTGAGGCAACAGATTACCAACTTACAGGGAAGTCGTGCT 240
Query 365 CAGATTAGGGGTGTAACAACTCATACACAGGCTCTGTATGCCAGCACTTCGATTTCATCT 424
|||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 CAGATTAGGGGTGTGACGACTCATACACAGGCTCTGTATGCCAGCACTTCGATATCATCT 300
Query 425 GGTATGAAAGGTGCTACCAAAGCTATGGTTGCAATGAACAAGCAAATGGCACCAACGAAA 484
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 301 GGCATGAAAGGTGCTACCAAAGCTATGGTTGCAATGAACAAGCAAATGGCACCCACTAAA 360
Query 485 CAAGCCAAGGTGATTAAAGATTTCCAAAAGCAGTCGGCACAGCTAGACATGACGATAGAG 544
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 CAAGCCAAGGTGATTAAGGATTTCCAGAAGCAGTCGGCACAGCTAGACATGACGATAGAG 420
Query 545 ATGATGTCAGAGGCAATTGATGAAACACTTGACAAAGATGAGGCTGAAGAAGAAACAGAA 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATGATGTCAGAGGCAATTGATGAAACACTTGACAAAGATGAGGCTGAAGAAGAAACAGAA 480
Query 605 GATCTCACTAACCAGGTTCTTGATGAGATTGGTGTTGGTGTTGCATCTCAGTTATCTTCA 664
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GATCTCACTAACCAAGTTCTTGATGAGATTGGTGTTGGTGTTGCATCTCAGTTATCTTCA 540
Query 665 GCTCCAAAAGGTCGGATTGCTACGAAAACCGCAGCTCCTCCCGCTTCCACTGCAGCTACT 724
||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 541 GCTCCTAAAGGCCGGATTGCTACAAAAACCGCAGCTCCTCCCGCTTCCACTGCAGCAACT 600
Query 725 AA---CAAGAACTCTGAATCAAGTGAAGTGGATGAGCTTGAGAAGAGGTTGGCTTCGCTA 781
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAAAACAACAACTCTGAATCAAGTGAAGTGGATGAGCTTGAGAAGAGGTTGGCTTCGCTT 660
Query 782 CGACGAATCTGA 793
||||||||||||
Sbjct 661 CGACGAATCTGA 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36064279482
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5