BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G44568.1

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg494529 jgi|Araly1|494529|fgenesh2_kg.8__345__AT5G44568.1          510    3e-144


> Ahg494529 jgi|Araly1|494529|fgenesh2_kg.8__345__AT5G44568.1
Length=446

 Score =  510 bits (276),  Expect = 3e-144
 Identities = 396/452 (88%), Gaps = 16/452 (4%)
 Strand=Plus/Plus

Query  8    TATATATGTGTCTTGTAATGGAGTTTTGAGAGAGTCGAGCACTTAAGTAATGGCTACAAA  67
            ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  1    TATATATATGTCTTGTAATGGAGTTTTGAGAGAGTCGAGCACTTAACTAATGGCTACAAA  60

Query  68   GACATCAAATTTAGGTCATCTTCTTCTGTCTTTGTTTATTCTGCTCTTGTTTATCTTATC  127
            |||||||||||||| || |||||||||||||||||||||||||||||| |||| ||||||
Sbjct  61   GACATCAAATTTAGTTCCTCTTCTTCTGTCTTTGTTTATTCTGCTCTTATTTACCTTATC  120

Query  128  TCAAGTTGGAGTCGCCCAGGCCAAACGTCTCCAACAAAGGAACAAATTGCGTTTGGATTG  187
            ||||||  || | |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  121  TCAAGTAAGACTTGCCCAGGCCAAACGTCTCCAACAAAGGAACGAATTGCGTTTGGATTG  180

Query  188  CGTTCCTCTTCCTCCTCCCCCTCCACCTCTCCGTGGCATCGTCAAACCTCCTATCGCTTC  247
             ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct  181  TGTTCCTCTTCCTCCTCCCCCTCCCCCTCTCCGTCGCATCGTCAAACCTCCTATCGCTTC  240

Query  248  GTTTCACTCTGCATCGCCTAAAGATAAAGGCCCATAAGCCATAAGTCATCAT-AG---TG  303
            ||||| ||||  ||||||||||||||||||||||||| ||| |||||||||  ||   ||
Sbjct  241  GTTTCCCTCTAAATCGCCTAAAGATAAAGGCCCATAACCCA-AAGTCATCACCAGAAGTG  299

Query  304  CAGGATAAGAGGTCAAGAGAGTTTT-ATAAGTATTTTGTTATACAAAA-CCATGTTGTAT  361
             |||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||
Sbjct  300  AAGGATAAGAGGTCAAGAGAGTTTTTATAAGTATTTTGTTATATAAAAACCATGTTGTAT  359

Query  362  CATATTTTT--TATTTATAGTT-A-AGGtttttttttCGTGTCTACAACACATGTACACA  417
              ||| | |  ||||| |  || | |  || || ||| || | |        |||| |||
Sbjct  360  GTTATATATCATATTTCTTTTTTATAAATTGTTATTTAGTTTTTTTT-----TGTATACA  414

Query  418  CACAATCAGACGTATATCTAGAATAAAATAAA  449
            |||||||||||||||||||||||||| |||||
Sbjct  415  CACAATCAGACGTATATCTAGAATAACATAAA  446



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16712147982


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5