BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G44574.1

Length=532
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg915736 jgi|Araly1|915736|Al_scaffold_0008_487                     289    2e-77


> Ahg915736 jgi|Araly1|915736|Al_scaffold_0008_487
Length=393

 Score =  289 bits (156),  Expect = 2e-77
 Identities = 197/217 (91%), Gaps = 2/217 (1%)
 Strand=Plus/Plus

Query  122  AAACCTACTAGTTTTAAAGTAAAAGCACGCGGAATAGAAGACGAGGGACAAGAACGAACA  181
            |||||| || ||||||||||||||||||| ||||| ||||||| ||||||||| ||||||
Sbjct  178  AAACCTGCTCGTTTTAAAGTAAAAGCACGTGGAATTGAAGACGTGGGACAAGAGCGAACA  237

Query  182  CACTCCCTAAATAGCAAAAAATCTTCAAGAAGCGTGGAGAAAACTCACCATTCAGAAGGG  241
            |||||| |||||| ||||||||||  |||||||||||||||||||||||| |||||||| 
Sbjct  238  CACTCCATAAATATCAAAAAATCTGGAAGAAGCGTGGAGAAAACTCACCAATCAGAAGGT  297

Query  242  AGGAGATTGAGCAATGT-TTTTCCAAATGCGGGCATAAGAGCAGGACCTTCAAAAAGTGG  300
            |||||| ||||| || | ||||||||| ||||||||||| ||||||||||||||||||||
Sbjct  298  AGGAGACTGAGC-ATTTATTTTCCAAAAGCGGGCATAAGGGCAGGACCTTCAAAAAGTGG  356

Query  301  ACAGGGTGGTGGTCGCATTCCCGTAGCCGCCTCCTAG  337
             |||||||||||||||||||||||||||||| |||||
Sbjct  357  TCAGGGTGGTGGTCGCATTCCCGTAGCCGCCCCCTAG  393



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19383039212


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5