BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G44578.1

Length=517
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg915730 jgi|Araly1|915730|Al_scaffold_0008_481                     390    4e-108


> Ahg915730 jgi|Araly1|915730|Al_scaffold_0008_481
Length=312

 Score =  390 bits (211),  Expect = 4e-108
 Identities = 267/295 (91%), Gaps = 0/295 (0%)
 Strand=Plus/Plus

Query  64   ttCAAAATTGACTCAAGTGTTCATTGTGGCTCTTCTCTGTATCTTCATATATCGTACCGA  123
            ||||||||||| ||||||||||||||||| |||||| || |||||||| |||||||||||
Sbjct  18   TTCAAAATTGAGTCAAGTGTTCATTGTGGTTCTTCTTTGCATCTTCATTTATCGTACCGA  77

Query  124  ATCAGCTATGTCTTCTCATCGTGAACAACTTTCACTTACCGGGAGGAGAATGATGGCGAA  183
             |||||||| |||||||||| |||||||||| || || ||||||| ||||||||||||||
Sbjct  78   CTCAGCTATTTCTTCTCATCATGAACAACTTCCAATTTCCGGGAGAAGAATGATGGCGAA  137

Query  184  CATTCCGTATCCGTATGGTGGCATATATGTGAAACCACCACCCTTAAAAAGTAAAGATAG  243
            || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct  138  CACTCCGTATCCGTATGGTGGCATATATGTGAAACCACCACCCTCAAAAAGTAAAGGTAG  197

Query  244  TAATCAGAAAGGGAAGAGAGGGGAGACTTATTATAAGCCAAATAGTGAAATAGGCACTGG  303
            | ||| ||||| |||||||  |||||| |||||||||||||||||||| ||||| || ||
Sbjct  198  TTATCTGAAAGTGAAGAGATTGGAGACATATTATAAGCCAAATAGTGAGATAGGTACAGG  257

Query  304  ACCATCACATAGTGGACATGGTGGTAGCAGCATTGAACATGTTTCCTCTCCTTAG  358
            ||||||||||||||||||||||||||||| |||||| || ||||| |||||||||
Sbjct  258  ACCATCACATAGTGGACATGGTGGTAGCACCATTGATCAAGTTTCATCTCCTTAG  312



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18810705377


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5