BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44590.1
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330935 jgi|Araly1|330935|fgenesh1_pm.C_scaffold_8000278 1443 0.0
Ahg948641 jgi|Araly1|948641|scaffold_800528.1 800 0.0
> Ahg330935 jgi|Araly1|330935|fgenesh1_pm.C_scaffold_8000278
Length=1086
Score = 1443 bits (781), Expect = 0.0
Identities = 959/1043 (92%), Gaps = 19/1043 (2%)
Strand=Plus/Plus
Query 7 ATCTCATATCTACATTCACTTTCTTGCAACAAAAGTTGCTTGCTTACATCTCAATTTTCA 66
||||||| |||||||| ||||||||||||| |||||| ||| ||| ||||||||||||||
Sbjct 7 ATCTCATCTCTACATTTACTTTCTTGCAACCAAAGTTTCTTCCTTTCATCTCAATTTTCA 66
Query 67 AAACCCTTGTTTATAAACCAAACTCAGAAGAAACTCAGATTCTCGATTTCCTTTTGCCTC 126
||||||||||| ||||||| |||||||||||| ||||||||| |||||||||||||||
Sbjct 67 AAACCCTTGTTCATAAACCTTTCTCAGAAGAAACCCAGATTCTCAATTTCCTTTTGCCTC 126
Query 127 AAGCAAAACGAATCTGGTATTGAACAAGTCgaagaagaagaagaagaagaaTTTACCGTT 186
||||||| |||||||| | || || ||| || |||||||||||||| ||||| |||
Sbjct 127 AAGCAAAGTGAATCTGGCAGCAAAGAACACGACGACGAAGAAGAAGAAGAGTTTACTGTT 186
Query 187 GTGACGGCCGTAAAAAGCAGATACAATGAGATTGTTATAGTGGATACTTTTGCTTCTAGA 246
||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 187 GTGACAGCCGTAAGAAGCAGATACAATGAGATTGTTATAGTCGATACTTTTGCTTCTAGA 246
Query 247 TATCTTCTTCTTGATTCCACTAGGAATGTGCATAGTGTTATCAATAAAGGAGGCCAGAAT 306
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 TATCTTCTTCTTGACTCCACTAGGAATGTGCATAGTGTTATCAATAAAGGAGGCCAGAAC 306
Query 307 TGGACTGGAGCTTATTGGGTAAATGTTGTTATTGTGTTTAATTTTGAATCCTATCAACAT 366
||||||||||||||||||||||| | |||| || ||||| ||||||||||||
Sbjct 307 TGGACTGGAGCTTATTGGGTAAA-------A-TGTGGTT--TTTTG--TCCTATCAACAT 354
Query 367 TTTTGTTTGAAGGACGAGTCTGCGTGTTTGCCGCCTATTATCCCTAATGGTCCCATTGCA 426
||||||||| |||| ||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 355 TTTTGTTTGCAGGATGAGTCTGCGAGTTTGCCTCCTATTATCCCTAATGGTCCCATTGCA 414
Query 427 ATCTACGGCTTGGGTGGTGGAACAGCTGCAAGATTGATTCTTGAGTTGTGGCCTTCAACG 486
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 415 ATCTACGGCTTGGGTGGTGGAACAGCTGCAAGATTGATTCTTGAGCTGTGGCCTTCAACG 474
Query 487 GAGCTTGAAGGTTGGGAAATCGATGAAATTTTGATTGAGAAAGCAAGAGACTATCTCGGG 546
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 AAGCTTGAAGGTTGGGAAATCGATGAAATTTTGATTGAGAAAGCAAGAGACTATCTCGGG 534
Query 547 CTGTCTGAGCTAGAGATACCGACATCAAAAGGCGGTAGACTTTGTATTCATGTAGATGAT 606
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 535 TTGTCTGAGCTAGAGATACCGACATCAAAAGGGGGTAGACTTTGTATTCATGTAGATGAT 594
Query 607 GCTCTCTCTCCTTGTCAAGATGATTCAAAAAGATATGCTGGGATCATCGTTGATTTGTTC 666
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GCTCTCTCTCCTTCTCAAGATGATTCAAAAAGATATGCTGGGATCATCGTTGATTTGTTC 654
Query 667 GCGGATGGAAAAGTGCTT-GATCAGCTGCAAGAGATTCCAATGTGGCTAGAACTGGCTAG 725
|| ||||||||||| || |||||||||||| | |||||||||||||| |||||||||||
Sbjct 655 GCTGATGGAAAAGTT-TTAGATCAGCTGCAACATATTCCAATGTGGCTGGAACTGGCTAG 713
Query 726 TAGGTTAATGCCTAACGGTCGCCTTATGGTGAATTGTGCGGGAATCGAAACAGAAGTAAA 785
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
Sbjct 714 TAGGTTAATGCCTAACGGTCGCCTTATGGTCAATTGTGCGGGAATCGAAACAGAGGTACA 773
Query 786 GAATGGAAAACCAGAGTTGGTGTTAGATGATTTGGCTTGGATGTTGAATTCTACTGTCAA 845
||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 774 GAATGGAAAACCACAGTTGGTGTTAGATGATTTAGCTTGGATGTTGAATTCTACAGTCAA 833
Query 846 GATCTTATCAGAAGCATTTCCTGGACAAGTTAGTTGGAAGAGAACACCAGATTCAGAAGG 905
|||||| ||||||||||||||| |||||||||| ||||||||||||||||||||| ||||
Sbjct 834 GATCTTCTCAGAAGCATTTCCTAGACAAGTTAGCTGGAAGAGAACACCAGATTCACAAGG 893
Query 906 TCTCAACTTTGTGGCATTAACAGGAGGCTTACCTGATCTTAGTGACTGGTCTAGTAAGGT 965
|||||||||||| || ||||| |||||||||||||||| |||||||||||||| |||||
Sbjct 894 TCTCAACTTTGTTGCCTTAACCGGAGGCTTACCTGATCGTAGTGACTGGTCTAACAAGGT 953
Query 966 TCCAGTCCGTTTAAGCGAATCAGTGAAGCTATGGAAGCTTTGCGAGACGGTCCCTTTGCA 1025
|||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
Sbjct 954 TCCAGTCCGTTTAAGCGAATCAGTGAAGCTATGGAAGCTTTGCGAGAC---CCCGTTAAA 1010
Query 1026 -ACTCGGTGCTTTGAATGCATCT 1047
| || |||||||||||||||||
Sbjct 1011 TA-TCAGTGCTTTGAATGCATCT 1032
> Ahg948641 jgi|Araly1|948641|scaffold_800528.1
Length=1042
Score = 800 bits (433), Expect = 0.0
Identities = 569/636 (89%), Gaps = 4/636 (1%)
Strand=Plus/Plus
Query 378 GGACGAGTCTGCGTGTTTGCCGCCTATTATCCCTAATGGTCCCATTGCAATCTACGGCTT 437
||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 GGATGAGTTTGCGAGTTTGCCGCCTATTATCCCTAATGGTCCCATTGCAATCTACGGCTT 445
Query 438 GGGTGGTGGAACAGCTGCAAGATTGATTCTTGAGTTGTGGCCTTCAACGGAGCTTGAAGG 497
||||||||||||||||||||||||||| ||||||||||||||| ||| | ||||||||||
Sbjct 446 GGGTGGTGGAACAGCTGCAAGATTGATGCTTGAGTTGTGGCCTACAATGCAGCTTGAAGG 505
Query 498 TTGGGAAATCGATGAAATTTTGATTGAGAAAGCAAGAGACTATCTCGGGCTGTCTGAGCT 557
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 506 TTGGGAAATTGATGAAATTTTGATTGAGAAAGCAAGAGACTATCTCGGGTTGTCTGAGCT 565
Query 558 AGAGATACCGACATCAAAAGGCGGTAGACTTTGTATTCATGTAGATGATGCTCTCTCTCC 617
||||| ||| ||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 566 AGAGAAACCAACATCGAAAGGCGGTAGACTTTGTGTTCATGTAGATGATGCTCTCTCTCC 625
Query 618 TTGTCAAGATGATTCAAAAAGATATGCTGGGATCATCGTTGATTTGTTCGCGGATGGAAA 677
|| |||||||| |||| |||||||||||||||||| ||||||||||| || ||||||||
Sbjct 626 TTCTCAAGATGTTTCAGGAAGATATGCTGGGATCATTGTTGATTTGTTTGCTGATGGAAA 685
Query 678 AGTGCTT-GATCAGCTGCAAGAGATTCCAATGTGGCTAGAACTGGCTAGTAGGTTAATGC 736
|| ||| |||||||||||| || | || || ||| | || || ||||||||| | ||||
Sbjct 686 GGT-CTTAGATCAGCTGCAACAGGTCCCTATTTGGTTGGAGCTTGCTAGTAGGCTGATGC 744
Query 737 CTAACGGTCGCCTTATGGTGAATTGTGCGGGAATCGAAACAGAAGTAAAGAATGGAAAAC 796
||||||||||| |||||||||||||||||||||||||||||||| | |||||||||| |
Sbjct 745 CTAACGGTCGCATTATGGTGAATTGTGCGGGAATCGAAACAGAATTGCAGAATGGAAAGC 804
Query 797 CAGAGTTGGTGTTAGATGATTTGGCTTGGATGTTGAATTCTACTGTCAAGATCTTATCAG 856
| ||||| |||||||||||| || ||||||||||||| |||||||||||||| |||
Sbjct 805 CTCAGTTGTTGTTAGATGATTCAGCCGGGATGTTGAATTCCACTGTCAAGATCTTGGCAG 864
Query 857 AAGCATTTCCTGGACAAGTTAGTTGGAAGAGAACACCAGATTCAGAAGGTCTCAACTTTG 916
|||||||||||||||||||| | |||||||||||||| ||| || ||||||||||||||
Sbjct 865 AAGCATTTCCTGGACAAGTTTGCTGGAAGAGAACACCGGATACACAAGGTCTCAACTTTC 924
Query 917 TGGCATTAACAGGAGGCTTACCTGATCTTAGTGACTGGTCTAGTAAGGTTCCAGTCCGTT 976
| || ||||| ||||||||||||||||||||||||||||||| ||| |||||| | ||||
Sbjct 925 TAGCCTTAACCGGAGGCTTACCTGATCTTAGTGACTGGTCTAATAAAGTTCCAATTCGTT 984
Query 977 TAAGCGAA-TCAGTGAAGCTATGGAAGCTTTGCGAG 1011
| |||||| | |||||||| |||||||||||| |||
Sbjct 985 TGAGCGAAGT-AGTGAAGCAATGGAAGCTTTGTGAG 1019
Score = 281 bits (152), Expect = 6e-75
Identities = 288/349 (83%), Gaps = 27/349 (8%)
Strand=Plus/Plus
Query 1 ATGACCATCTCATATCTACATTCACTTTCTTGCA-ACAAAAGTTGCTTGCTTACATCTCA 59
||||||||||||| ||||||||||||||| | | || |||||||||| ||| ||| ||
Sbjct 42 ATGACCATCTCATCGCTACATTCACTTTCTCG-ATACGAAAGTTGCTTCCTTTTATCCCA 100
Query 60 ATTTTCAAAACCCTTGTTTATAAACCAAACTCAGAAGAAACTCAGATTCTCGATTTCCTT 119
|||||||||||||||||| ||||||| | ||||||| |||| ||||||||| ||||| ||
Sbjct 101 ATTTTCAAAACCCTTGTTCATAAACCCATCTCAGAACAAACCCAGATTCTCAATTTCGTT 160
Query 120 TTGCCTCAAGCAAA---A-CG-AAT--CTGG--TATTGAACAAG--TC--g---a-a-ga 161
|||||||||||||| | || || || ||| |||||| || | | | ||
Sbjct 161 TTGCCTCAAGCAAAGTGATCGTGATGAGAGGCAAATTCAACAAGAATCTAGCAAAGATGA 220
Query 162 --a-gaagaagaagaagaaT-TTACCGTTGTGACGGCCGTAAAAAGCAGATACAATGAGA 217
| |||||||||||||| | || ||||| || ||||| | |||||||||||||||||
Sbjct 221 CGACGAAGAAGAAGAAGAGTATT-GGGTTGTTACAGCCGTGAGAAGCAGATACAATGAGA 279
Query 218 TTGTTATAGTGGATACT-TTTGCTTCTAGATATCTTCTTCTTGATTCCACTAGGAATGTG 276
||||||||||||| ||| ||| |||| |||||||||||||||||||| |||| |||||||
Sbjct 280 TTGTTATAGTGGAGACTGTTT-CTTCCAGATATCTTCTTCTTGATTCAACTAAGAATGTG 338
Query 277 CATAGTGTTATCAATAAAGGAGGCCAGAATTGGACTGGAGCTTATTGGG 325
||||||||||||||||||||||| || |||||||||||| |||||||||
Sbjct 339 CATAGTGTTATCAATAAAGGAGGTCAAAATTGGACTGGATCTTATTGGG 387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39075989925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5