BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44600.1
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948641 jgi|Araly1|948641|scaffold_800528.1 1570 0.0
Ahg330935 jgi|Araly1|330935|fgenesh1_pm.C_scaffold_8000278 817 0.0
> Ahg948641 jgi|Araly1|948641|scaffold_800528.1
Length=1042
Score = 1570 bits (850), Expect = 0.0
Identities = 976/1036 (94%), Gaps = 12/1036 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaTGGCAGCTTTGTGTTC-T-CATTTGACCATCTCATCTCTACATTCACTTTCTC 58
|||||||||||||||||| |||| | || ||||||||||||| ||||||||||||||||
Sbjct 15 AAAAAAATGGCAGCTTTGAGTTCTTCCA--TGACCATCTCATCGCTACATTCACTTTCTC 72
Query 59 GATACGAAAATTGCTTCCTTTCATCCCAATTTTCAAAACCCTTGTTCCTAAACCAATCTC 118
||||||||| ||||||||||| ||||||||||||||||||||||||| |||||| |||||
Sbjct 73 GATACGAAAGTTGCTTCCTTTTATCCCAATTTTCAAAACCCTTGTTCATAAACCCATCTC 132
Query 119 AGAACAAACCCAGATTCTCAATTTCATTTTGTCTCAAGCAAAGTAATCATGACGAGAGGC 178
||||||||||||||||||||||||| ||||| |||||||||||| ||| ||| |||||||
Sbjct 133 AGAACAAACCCAGATTCTCAATTTCGTTTTGCCTCAAGCAAAGTGATCGTGATGAGAGGC 192
Query 179 AAATTCAACAAGACTCT-GCCAaagaagaagaagaagaagaagaagaGTATTGGGTTGTT 237
||||||||||||| ||| | |||||| || || |||||||||||||||||||||||||||
Sbjct 193 AAATTCAACAAGAATCTAG-CAAAGATGACGACGAAGAAGAAGAAGAGTATTGGGTTGTT 251
Query 238 ACAGCAGTAAGAAGCAGATACAATGAGATTGTTATAGTGGATACTGCTTCTTCCAGATAT 297
||||| || |||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 252 ACAGCCGTGAGAAGCAGATACAATGAGATTGTTATAGTGGAGACTGTTTCTTCCAGATAT 311
Query 298 CTTCTCCTTGATTCAACTAAGAATGTGCATAGTGTTATCAATAAAGGAGGCCAAAATTGG 357
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 312 CTTCTTCTTGATTCAACTAAGAATGTGCATAGTGTTATCAATAAAGGAGGTCAAAATTGG 371
Query 358 ACTGGATCTTATTGGGATGAGTTTGCGAGTTTGCCGCCTATTATCCCTAATGGTCCCGTT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 372 ACTGGATCTTATTGGGATGAGTTTGCGAGTTTGCCGCCTATTATCCCTAATGGTCCCATT 431
Query 418 GCAATCTACGGCTTGGGTGGTGGAACAGCTGCAAGATTGATGCTTGAGTTGTGGCCTACA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 GCAATCTACGGCTTGGGTGGTGGAACAGCTGCAAGATTGATGCTTGAGTTGTGGCCTACA 491
Query 478 ATGCAGCTGGAAGGTTGGGAAATTGATGAAATTTTGATTGAGAAAGCAAGAGACTATCTC 537
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 ATGCAGCTTGAAGGTTGGGAAATTGATGAAATTTTGATTGAGAAAGCAAGAGACTATCTC 551
Query 538 GGGTTGTCTGAGCTAGAGAAACCGACATCGAAAGGCGGTAGACTTTGTGTTCATGTAGAT 597
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 552 GGGTTGTCTGAGCTAGAGAAACCAACATCGAAAGGCGGTAGACTTTGTGTTCATGTAGAT 611
Query 598 GATGCTCTCTCTCCTTCTCAAGATGTTTCAGGAAGATATGCTGGGATCATTGTTGATTTG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 GATGCTCTCTCTCCTTCTCAAGATGTTTCAGGAAGATATGCTGGGATCATTGTTGATTTG 671
Query 658 TTTGCTGATGGGAAGGTCTTAGATCAGCTGCAAGAGGTCCCGATTTGGTTAGAGCTGGCT 717
||||||||||| ||||||||||||||||||||| ||||||| |||||||| ||||| |||
Sbjct 672 TTTGCTGATGGAAAGGTCTTAGATCAGCTGCAACAGGTCCCTATTTGGTTGGAGCTTGCT 731
Query 718 AGTAGGCTAATGCCTAACGGTCGCATTATGGTGAACTGTGCGGGAATCGAAACAGAACTT 777
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 732 AGTAGGCTGATGCCTAACGGTCGCATTATGGTGAATTGTGCGGGAATCGAAACAGAA-TT 790
Query 778 -CAGAATGGAAAGCCTCAGTTGTTGTTAGATGACTCAGCCGGGATGTTGAATTCCACCGT 836
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 791 GCAGAATGGAAAGCCTCAGTTGTTGTTAGATGATTCAGCCGGGATGTTGAATTCCACTGT 850
Query 837 CAAGATCTTGTCAGAAGCATTTCCTGGACAAGTTTGCTGGAAGAGAACACCAGATTCGGA 896
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||| | |
Sbjct 851 CAAGATCTTGGCAGAAGCATTTCCTGGACAAGTTTGCTGGAAGAGAACACCGGATACACA 910
Query 897 AGGTCTCAACTTTCTTGCCTTAACCGGAGGCTTACCTGATCTTAGTGACTGGTCTAGTAA 956
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 911 AGGTCTCAACTTTCTAGCCTTAACCGGAGGCTTACCTGATCTTAGTGACTGGTCTAATAA 970
Query 957 GGTTCCAGTTCGTTTTTGTGAAGTAGTGAAGCAATGGAAGCTTTGTGAGTGAGTACACAA 1016
|||||| ||||||| | ||||||||||||||||||||||||||||||| || || ||
Sbjct 971 AGTTCCAATTCGTTTGAGCGAAGTAGTGAAGCAATGGAAGCTTTGTGAGT-AG-ACG-AA 1027
Query 1017 AGTAGCTGAAGttttt 1032
| ||||||||| |||
Sbjct 1028 -GAAGCTGAAGTCTTT 1042
> Ahg330935 jgi|Araly1|330935|fgenesh1_pm.C_scaffold_8000278
Length=1086
Score = 817 bits (442), Expect = 0.0
Identities = 571/635 (90%), Gaps = 2/635 (0%)
Strand=Plus/Plus
Query 372 GGATGAGTTTGCGAGTTTGCCGCCTATTATCCCTAATGGTCCCGTTGCAATCTACGGCTT 431
|||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 366 GGATGAGTCTGCGAGTTTGCCTCCTATTATCCCTAATGGTCCCATTGCAATCTACGGCTT 425
Query 432 GGGTGGTGGAACAGCTGCAAGATTGATGCTTGAGTTGTGGCCTACAATGCAGCTGGAAGG 491
||||||||||||||||||||||||||| |||||| |||||||| ||| | |||| |||||
Sbjct 426 GGGTGGTGGAACAGCTGCAAGATTGATTCTTGAGCTGTGGCCTTCAACGAAGCTTGAAGG 485
Query 492 TTGGGAAATTGATGAAATTTTGATTGAGAAAGCAAGAGACTATCTCGGGTTGTCTGAGCT 551
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 TTGGGAAATCGATGAAATTTTGATTGAGAAAGCAAGAGACTATCTCGGGTTGTCTGAGCT 545
Query 552 AGAGAAACCGACATCGAAAGGCGGTAGACTTTGTGTTCATGTAGATGATGCTCTCTCTCC 611
||||| ||||||||| ||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 546 AGAGATACCGACATCAAAAGGGGGTAGACTTTGTATTCATGTAGATGATGCTCTCTCTCC 605
Query 612 TTCTCAAGATGTTTCAGGAAGATATGCTGGGATCATTGTTGATTTGTTTGCTGATGGGAA 671
||||||||||| |||| |||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 606 TTCTCAAGATGATTCAAAAAGATATGCTGGGATCATCGTTGATTTGTTCGCTGATGGAAA 665
Query 672 GGTCTTAGATCAGCTGCAAGAGGTCCCGATTTGGTTAGAGCTGGCTAGTAGGCTAATGCC 731
|| ||||||||||||||| | | || || ||| | || |||||||||||| |||||||
Sbjct 666 AGTTTTAGATCAGCTGCAACATATTCCAATGTGGCTGGAACTGGCTAGTAGGTTAATGCC 725
Query 732 TAACGGTCGCATTATGGTGAACTGTGCGGGAATCGAAACAGAACTTCAGAATGGAAAGCC 791
|||||||||| ||||||| || |||||||||||||||||||| | ||||||||||| ||
Sbjct 726 TAACGGTCGCCTTATGGTCAATTGTGCGGGAATCGAAACAGAGGTACAGAATGGAAAACC 785
Query 792 TCAGTTGTTGTTAGATGACTCAGCCGGGATGTTGAATTCCACCGTCAAGATCTTGTCAGA 851
|||||| |||||||||| | ||| ||||||||||||| || ||||||||||| |||||
Sbjct 786 ACAGTTGGTGTTAGATGATTTAGCTTGGATGTTGAATTCTACAGTCAAGATCTTCTCAGA 845
Query 852 AGCATTTCCTGGACAAGTTTGCTGGAAGAGAACACCAGATTCGGAAGGTCTCAACTTTCT 911
|||||||||| |||||||| |||||||||||||||||||||| |||||||||||||| |
Sbjct 846 AGCATTTCCTAGACAAGTTAGCTGGAAGAGAACACCAGATTCACAAGGTCTCAACTTTGT 905
Query 912 TGCCTTAACCGGAGGCTTACCTGATCTTAGTGACTGGTCTAGTAAGGTTCCAGTTCGTTT 971
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 906 TGCCTTAACCGGAGGCTTACCTGATCGTAGTGACTGGTCTAACAAGGTTCCAGTCCGTTT 965
Query 972 TTGTGAAGT-AGTGAAGCAATGGAAGCTTTGTGAG 1005
| ||| | |||||||| |||||||||||| |||
Sbjct 966 AAGCGAA-TCAGTGAAGCTATGGAAGCTTTGCGAG 999
Score = 287 bits (155), Expect = 1e-76
Identities = 285/343 (83%), Gaps = 27/343 (8%)
Strand=Plus/Plus
Query 34 ATCTCATCTCTACATTCACTTTCTCG-ATACGAAAATTGCTTCCTTTCATCCCAATTTTC 92
|||||||||||||||| ||||||| | | || ||| || |||||||||||| ||||||||
Sbjct 7 ATCTCATCTCTACATTTACTTTCTTGCA-ACCAAAGTTTCTTCCTTTCATCTCAATTTTC 65
Query 93 AAAACCCTTGTTCCTAAACCAATCTCAGAACAAACCCAGATTCTCAATTTCATTTTGTCT 152
||||||||||||| |||||| |||||||| |||||||||||||||||||| ||||| ||
Sbjct 66 AAAACCCTTGTTCATAAACCTTTCTCAGAAGAAACCCAGATTCTCAATTTCCTTTTGCCT 125
Query 153 CAAGCAAAGT-AATCATGACGAGAGGCAAATTCAACAAGACTCTGCCAaagaagaagaag 211
|||||||||| |||| || | | ||||| ||| | | || || ||||
Sbjct 126 CAAGCAAAGTGAATC-TG--G-CA-GCAAA--GAAC---A------C---GACGACGAAG 166
Query 212 aagaagaagaagaGTATTGGGTTGTTACAGCAGTAAGAAGCAGATACAATGAGATTGTTA 271
||||||||| || || | ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 167 AAGAAGAAG-AGTTTACT--GTTGTGACAGCCGTAAGAAGCAGATACAATGAGATTGTTA 223
Query 272 TAGTGGATACTGCTT-CTTCCAGATATCTTCTCCTTGATTCAACTAAGAATGTGCATAGT 330
|||| |||||| || |||| ||||||||||| ||||| || |||| |||||||||||||
Sbjct 224 TAGTCGATACTT-TTGCTTCTAGATATCTTCTTCTTGACTCCACTAGGAATGTGCATAGT 282
Query 331 GTTATCAATAAAGGAGGCCAAAATTGGACTGGATCTTATTGGG 373
|||||||||||||||||||| || ||||||||| |||||||||
Sbjct 283 GTTATCAATAAAGGAGGCCAGAACTGGACTGGAGCTTATTGGG 325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43307633712
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5