BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G44610.1

Length=749
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg948640 jgi|Araly1|948640|scaffold_800527.1                        544    5e-154


> Ahg948640 jgi|Araly1|948640|scaffold_800527.1
Length=527

 Score =  544 bits (294),  Expect = 5e-154
 Identities = 489/571 (86%), Gaps = 62/571 (11%)
 Strand=Plus/Plus

Query  85   AAAAGATGGGTTATTGGAAGTCGAAGGTTGTTCCAAGGATGAAGAAATTGTTCGAGAAGA  144
            ||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||
Sbjct  17   AAAAGATGGGTTATTGGAAATCTAAGGTTGTTCCAAGGATGAAGAGATTGTTCGAGAAGA  76

Query  145  GTCCAGCAAAAAAGGAAGTTGTTGAGGAGGAGAAGCCACGAGAGGTGGAAGTCGTGGAGG  204
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  77   GTCCAGCAAAAAAGGAAGTTGTTGAGGAGGAGAAGCCACGAGAGGTGGAAGTTGTGGAGG  136

Query  205  AGGTCGTCGTGAAAACCGAAGAACCGGCCAAGGAAGGAGAAACTAAACCGGAGGAAATAA  264
            ||||||||||||||||||||||||||||||||| || |||||| ||||||||||  | ||
Sbjct  137  AGGTCGTCGTGAAAACCGAAGAACCGGCCAAGGTAGAAGAAACCAAACCGGAGG--A-AA  193

Query  265  TTGCAACCGGCGAGAAAGAGATAGAAATAGTTGAAGAGAAGAAAGAAGAGGCTAAACCGG  324
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  194  TTGCAACCGGAGAGAAAGAGATAGAAATAGTTGAAGAGAAGAAAGAAGAGGCTAAACCGG  253

Query  325  TGGAGGTTCCGGTCCTCGCAGCTGCggaggagaagaa-gccagccg-tagaagaggagaa  382
            ||||||||||||||| || ||  | | |  ||||||  ||  |||| | |||||| | | 
Sbjct  254  TGGAGGTTCCGGTCC-CGGAG--GAG-A--AGAAGACTGC--GCCGGTGGAAGAG-A-A-  302

Query  383  gaagacggcgccggtggaagagaagaagccagctgtggaagaggagaagaagcctgccgt  442
            |||| | ||   | ||||||||  || |  |       | ||  ||      ||||||||
Sbjct  303  GAAGCCAGCT--G-TGGAAGAG--GA-G--A-------A-GA--AG------CCTGCCGT  338

Query  443  ggaagagaagaaacctgtggaggaggagaaaaaagaagTTGTTGCCGCTGTTCCGGTGGC  502
            |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct  339  GGAAGAGAAGAAACCTGTGGTGGAGGAGAAAAAAGAAGTTGTTGCCGCGGTTCCGGTGGC  398

Query  503  TGAAACTCCTTCGACTAAGGCTCCCGAAACTCCGGTGGTTGAAACTCCGGCCAAGGCTCC  562
            ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
Sbjct  399  TGAAACTCCTTCGACCAAGGCTCCCGAAACTCCCGTGGTTGAAACTCCGGCCAAGGCTGC  458

Query  563  GGAAACTCCGGCGGCTGCGCCACAAAAGGCTTGAATTTTCTTCATGGTACATTTTTCTaa  622
            |||||||||||          | |      ||   ||  |||||||||||||||||||||
Sbjct  459  GGAAACTCCGG----------A-A------TT---TT--CTTCATGGTACATTTTTCTAA  496

Query  623  aaaaaTATTGATTGTCTTTGTGTGGATAATT  653
            |||||||||||||||||||||||||||||||
Sbjct  497  AAAAATATTGATTGTCTTTGTGTGGATAATT  527



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27600991908


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5