BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44620.1
Length=1708
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333172 jgi|Araly1|333172|fgenesh1_pm.C_scaffold_90000001 1694 0.0
Ahg494525 jgi|Araly1|494525|fgenesh2_kg.8__341__AT5G44620.1 1397 0.0
Ahg943136 jgi|Araly1|943136|scaffold_603680.1 547 8e-155
> Ahg333172 jgi|Araly1|333172|fgenesh1_pm.C_scaffold_90000001
Length=1290
Score = 1694 bits (917), Expect = 0.0
Identities = 1078/1154 (93%), Gaps = 17/1154 (1%)
Strand=Plus/Plus
Query 425 CCAA-AGTGGCGGATGCTGAGGAAGCTATGTGTTAATAGGATACTGAG-AAACGCCATGT 482
|||| | ||||||||||||||||| ||||||||||||||||||||||| ||| |||||||
Sbjct 138 CCAATACTGGCGGATGCTGAGGAAACTATGTGTTAATAGGATACTGAGCAAA-GCCATGT 196
Query 483 TGGATTCCTCCACTGACCTCCGTCGCCGAGAGACTCGGCAAACCGTCCGGTATTTGGCGG 542
|||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||
Sbjct 197 TGGATTCCTCCACTGAACTCCGTCGACAAGAGACTCGGCAAACCGTCCGGTATTTGGCGG 256
Query 543 ACCAGGCTCGGGTCGGTTCACCAGTTAACCTGGGAGAACAAATATTCTTGATGATGTTGA 602
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 257 ACCAGGCTCGGGTCGGTTCGCCGGTTAACCTGGGAGAACAAATATTCTTGATGATGTTGA 316
Query 603 ATGTTGTGACGCAGATGCTATGGGGAACAACGGTTAAGGAAGAAGAGAGGGAGGTTGTTG 662
||||| | ||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 317 ATGTTATTACGCAGATGCTATGGGGCACAACGGTTAAGGAAGAAGAGAGGGATGTTGTTG 376
Query 663 GAGCCGAGTTCTTAGAGGTGATTAGAGAGATGAACGACCTCCTGCTAGTGCCCAATATCT 722
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 GGGCCGAGTTCTTAGAGGTGATTAGAGAGATGAACGACCTCCTGCTAGTGCCCAATATCT 436
Query 723 CCGACTTTTTCCCGGTATTGAGCCGGTTTGATCTTCAGGGTTTGGCTAAGCGTATGCGAA 782
|||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 437 CCGACTTTTTTCCGGTTTTGAGCCGGTTTGATCTTCAGGGTTTGGTTAAGCGTATGCAAA 496
Query 783 GACCGGCTCAAAGAATGGATCAGATGTTCGACCGGATCATTAACCAACGGTTGGGGATGG 842
||||||||||||| |||||||||||||| ||||||||||| ||||||||| |||||| ||
Sbjct 497 GACCGGCTCAAAGGATGGATCAGATGTTTGACCGGATCATCAACCAACGGCTGGGGAAGG 556
Query 843 ATAGGGACAGTAGTGACGGGAGAGCTGTGGATTTTCTAGACGTCTTGTTGAAAGTCAAGG 902
|||||||||||||||| |||||||||| ||||||||| || |||||||||||||| ||||
Sbjct 557 ATAGGGACAGTAGTGATGGGAGAGCTGGGGATTTTCTTGATGTCTTGTTGAAAGTTAAGG 616
Query 903 ATGAAGAAGCTGAAAAGACGAAGTTGACCATGAACGATGTCAAGGCCGTACTCATGGACA 962
|||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 617 ATGAAGAAAATGAAAAGACGAATTTGACCATGAACGATGTCAAGGCCGTGCTCATGGACA 676
Query 963 TGGTGCTCGGTGGTACAGACACATCACTGCACGTAATAGAATTCGCGATGGCCGAGCTAT 1022
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 677 TGGTGCTCGGTGGTACAGACACATCACTGCACGTTATAGAATTCGCGATGGCCGAGTTAT 736
Query 1023 TACACAACCCCGATATCATGAAGAGAGCTCAACAAGAGGTTGACAAAGTTGTGGGAAAAG 1082
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 737 TACACAACCCGGATATCATGAAGAGAGCTCAACAAGAGCTTGACAAAGTTGTGGGCAAAG 796
Query 1083 AAAAAGTTGTGGAAGAATCTCACATCTCTAAACTTCCATACATTCTCGCCATTATGAAAG 1142
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 797 AAAAAGTTGTGGACGAATCTCACATCTCTAAACTTCCATACATTCTTGCCATTATGAAAG 856
Query 1143 AAACTCTAAGGCTTCACACGGTTGCTCCACTCCTTGTTCCTCGGCGCCCGTCACAAACCA 1202
|||||||||||||||||||| || |||||||||||||||||| || |||||| ||||||
Sbjct 857 AAACTCTAAGGCTTCACACGATTATTCCACTCCTTGTTCCTCGCCGACCGTCAAAAACCA 916
Query 1203 CCGTGGTGGGCGGCTTCACCATCCCTAAAGATTCAAAGATTTTCATCAACGCGTGGGCAA 1262
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
Sbjct 917 CCGTGGTGGGCGGCTTCACCATCCCTAAAGATTCAAAGATTTTCATCAATGTGTGGGCGA 976
Query 1263 TCCATAGGAACCCGAATGTATGGGAGAATCCACTGAAGTTTGATCCCGACAGGTTTCTGG 1322
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 977 TCCATAGGAACCCCAATGTATGGGAGAATCCACTAAAGTTTGATCCCGACAGGTTTCTTG 1036
Query 1323 ATA-TGTCTTATGACTTCAAAGGAAATGACTTCAATTATCTACCGTTTGGGTCTGGTCGT 1381
||| | |||||||||||||| |||||||||||||| ||| ||||||||||
Sbjct 1037 ATAAT-TCTTATGACTTCAAGGGAAATGACTTCAACTATTTACCGTTTGG---------- 1085
Query 1382 AGGATATGCGTGGGAATGGCTATGGGCGAGAGGGTTGTTCTTTACAATCTCGCTACGTTT 1441
| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1086 A--ATATGTGTGGGAATGGCCATGGGCGAGAGGGTAGTTCTTTACAATCTCGCTACGTTT 1143
Query 1442 TTGCATTCTTTTGATTGGAAAATTCCGCAAGGAGAGAGAGTGGAGGTCGAGGAGAAGTTT 1501
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1144 TTGCATTCTTTTGATTGGAAAATTCCACAAGGAGAGAGAGTGGAGGTGGAGGAGAAGTTT 1203
Query 1502 GGGATCGTGTTGGAGCTAAAGAATCCACTTGTTGCCACGCCCGTTCTAAGGTTGTCCGAT 1561
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1204 GGGATCGTGTTGGAGCTAAAGAATCCACTTGTTGCCGCGCCCGTACTAAGGTTGTCCGAT 1263
Query 1562 CCAAATCTTTATCT 1575
||||||||||||||
Sbjct 1264 CCAAATCTTTATCT 1277
Score = 147 bits (79), Expect = 4e-34
Identities = 95/103 (92%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 237 TGGCTAAAAAGCACGGTCCCATTTTCAAACTCTGGCTCGGGGCCAAGCTCACAATCGTGG 296
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 2 TGGCTAAAAAGCACGGTCCCATTTTCAAACTCTGGCTCGGGGCCAAGCTGGCAATTGTGG 61
Query 297 TCACCTCTTCTGAAGTAGCGCAAGAGATTCTCAAAACGAATGA 339
|||| |||||||||||||| ||||||||| | ||||| |||||
Sbjct 62 TCACATCTTCTGAAGTAGCCCAAGAGATTTTTAAAACAAATGA 104
> Ahg494525 jgi|Araly1|494525|fgenesh2_kg.8__341__AT5G44620.1
Length=1436
Score = 1397 bits (756), Expect = 0.0
Identities = 1064/1202 (89%), Gaps = 64/1202 (5%)
Strand=Plus/Plus
Query 473 AACGCCATGTTGGATTCCTCCACTGACCTCCGTCGCCGAGAGACTCGGCAAACCGTCCGG 532
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 292 AACGCCATGTTGGATTCTTCCACTGACCTCCGTCGCCGAGAGACTCGGAAAACCGTCCGG 351
Query 533 TATTTGGCGGACCAGGCTCGGGTCGGTTCACCAGTTAACCTGGGAGAACAAATATTCTTG 592
|||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 352 TATTTGGCGGGCCAGGCTCGGGTCGGTTCACCGGTTAACTTGGGAGAACAAATATTCTTG 411
Query 593 ATGATGTTGAATGTTGTGACGCAGATGCTATGGGGAACAACGGT-TAAGGAAGAAGAGAG 651
||||||||||||||||||||||||||||||||||| | ||||| |||| | |||||||
Sbjct 412 ATGATGTTGAATGTTGTGACGCAGATGCTATGGGGCAGGACGGTCAAAGGCA-AAGAGAG 470
Query 652 GGAG-GTTGTTGGAGCCGAGTTCTTAGAGGTGATTAGAGAGATGAACGACCTCCTGCTAG 710
|||| | ||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 GGAGAG-TGTCGTAGCCGAGTTCTTAGAGGTGATTAGAGAGATGAACGACCTCCTGCTAG 529
Query 711 TGCCCAATATCTCCGACTTTTTCCCGGTATTGAGCCGGTTTGATCTTCAGGGTTTGGCTA 770
|||||||||| ||||||||||| |||| ||||||||| |||||||| || ||||||| ||
Sbjct 530 TGCCCAATATATCCGACTTTTTTCCGGCATTGAGCCGATTTGATCTACAAGGTTTGGTTA 589
Query 771 AGCGTATGCGAAGACCGGCTCAAAGAATGGATCAGATGTTCGACCGGATCATTAACCAAC 830
||||||||||| |||| ||||| || ||||| |||||||| |||||||| ||||||||||
Sbjct 590 AGCGTATGCGAGGACCAGCTCAGAGGATGGACCAGATGTTTGACCGGATTATTAACCAAC 649
Query 831 GGTTGGGGATGGATAGGGACAGTAGTGACGGGAGAGCTGTGGATTTTCTAGACGTCTTGT 890
||||||||||||||||||| | |||||| ||| | ||| |||||||| || | | |
Sbjct 650 GGTTGGGGATGGATAGGGA-A--AGTGACTGGAAAACTGAAGATTTTCTGGATG-C--CT 703
Query 891 TGAAAGTCAAGGATGAAGAAGCTGAAAAGACGAAGTTGACCATGAACGATGTCAAGGC-C 949
| || |||| || | | | || ||||||||||||||||||||||| |
Sbjct 704 T----GT------TGAA-AA--T----A-A--AA-TTGACCATGAACGATGTCAAGGCTC 742
Query 950 GTACTCATGGACATGGTGCTCGGTGGTACAGACACATCACTGCACGTAATAGAATTCGCG 1009
| ||| |||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 743 -TGCTCGTGGACATGGTGCTCGGTGGTACAGACACATCACTACACATCATAGAATTCGCG 801
Query 1010 ATGGCCGAGCTATTACACAACCCCGATATCATGAAGAGAGCTCAACAAGAGGTTGACAAA 1069
||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 802 ATGCCCGAGCTATTACACAACCCGGATATCATGAAGAGAGCTCAACAAGAGCTTGACAAA 861
Query 1070 GTTGTGGGAAAAGAAAAAGTTGTGGAAGAATCTCACATCTCTAAACTTCCATACATTCTC 1129
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 862 GTTGTGGGCAAAGAAAAGGTTGTGGACGAATCTCACATCTCTAAACTTCCATACATTCTT 921
Query 1130 GCCATTATGAAAGAAACTCTAAGGCTTCACACGGTTGCTCCACTCCTTGTTCCTCGGCGC 1189
||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||| ||
Sbjct 922 GCCATTATGAAAGAAACTCAAAGGCTTCACACGATTGTTCCACTCCTTGTTCCTCGCCGA 981
Query 1190 CCGTCACAAACCACCGTGGTGGGCGGCTTCACCATCCCTAAAGATTCAAAGATTTTCATC 1249
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 CCGTCAAAAACCACCGTGGTGGGCGGCTTCACCATCCCTAAAGATTCAAAGATTTTCATC 1041
Query 1250 AACGCGTGGGCAATCCATAGGAACCCGAATGTATGGGAGAATCCACTGAAGTTTGATCCC 1309
|| | |||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1042 AATGTGTGGGCGATCCATAGGAACCCCAATGTATGGGAGAATCCACTAAAGTTTGATCCC 1101
Query 1310 GACAGGTTTCTGGATATGTCTTATGACTTCAAAGGAAATGACTTCAATTATCTACCGTTT 1369
||||||||||| |||| ||||||||||||||| |||||||||||||| ||| ||||||||
Sbjct 1102 GACAGGTTTCTTGATAAGTCTTATGACTTCAAGGGAAATGACTTCAACTATTTACCGTTT 1161
Query 1370 GGGTCTGGTCGTAGGATATGCGTGGGAATGGCTATGGGCGAGAGGGTTGTTCTTTACAAT 1429
|||||||||||||| ||||| || ||| | || || |||||||||
Sbjct 1162 GGGTCTGGTCGTAGAATATG--TG----TGG-T-TG----------TT---CTTTACAAT 1200
Query 1430 CTCGCTACGTTTTTGCATTCTTTTGATTGGAAAATTCCGCAAGGAGAGAGAGTGGAGGTC 1489
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1201 CTCGCTACGTTATTGCATTCTTTTGATTGGAAAATTCCACAAGGAGAGAGAGTGGAGGTG 1260
Query 1490 GAGGAGAAGTTTGGGATCGTGTTGGAGCTAAAGAATCCACTTGTTGCCACGCCCGTT-CT 1548
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1261 GAGGAGAAGTTTGGGATCGTGTTGGAGCTAAAGAATCCACTTGTTGCCACGCCC-TTACT 1319
Query 1549 AAGGTTGTCCGATCCAAATCTTTATCTCTAGGGTCTT-AAGTTCAACACAAAGGAA--CT 1605
||||||||||||||||||||||||||| ||| || || ||||||||||||||| || ||
Sbjct 1320 AAGGTTGTCCGATCCAAATCTTTATCTTTAGAGT-TTCAAGTTCAACACAAAGAAATACT 1378
Query 1606 GAATGTTCTACAATTCGAGCTTATTTGTGTGTCTTGTATGATTTAATAAAAGCCGTTCAA 1665
||||||| |||| || |||||||||||| ||| |||| |||||||||||||||| |||
Sbjct 1379 GAATGTTATACAG--CGGGCTTATTTGTGT-TCT-GTATTATTTAATAAAAGCCGTACAA 1434
Query 1666 TG 1667
||
Sbjct 1435 TG 1436
Score = 291 bits (157), Expect = 2e-77
Identities = 236/272 (87%), Gaps = 13/272 (5%)
Strand=Plus/Plus
Query 136 CAAACGGCGGTCTCCACCGTTGCCGCCGGGACCTTGGGGCCTTCCCATTATCGGAAACCT 195
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 14 CAAACCGCGGTCTCCACCGTTGCCGCCGGGACCTTGGGGCCTTCCCATTATCGGATTCCT 73
Query 196 TCCATTCCTCCAACCGGAGCTTCACACCTACTTCCAAGGGCTGGCTAAAAAGCACGGTCC 255
|||||||||| |||||||| |||||||| | ||||||||||||| |||||
Sbjct 74 TCCATTCCTCAAACCGGAG-----------CTTCCAAGAGTTGGCTAAAAAGCATGGTCC 122
Query 256 CATTTTCAAACTCTGGCTCGGGGCCAAGCTCACAATCGTGGTCACCTCTTCTGAAGTAGC 315
|||||||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 123 CATTTTCAAACTCTGGCTCGGGGCGAAACTGACAATCGTGGTCACCTCTTCTGAAGTAGC 182
Query 316 GCAAGAGATTCTCAAAACGAATGACATCATCTTCGCGAACCACGATGTCCCTGCTGTGGG 375
||||| ||||||| ||||||||| ||||||||||| ||||||||||||||||| || |
Sbjct 183 CCAAGATATTCTCAGAACGAATGATATCATCTTCGCAAACCACGATGTCCCTGCCGTTGC 242
Query 376 -CCCTGTTAACACGTATGGTGGTACGGAGATC 406
||| | || ||||| ||||||| |||||||
Sbjct 243 TCCC-GCCAATACGTACGGTGGTATGGAGATC 273
> Ahg943136 jgi|Araly1|943136|scaffold_603680.1
Length=1137
Score = 547 bits (296), Expect = 8e-155
Identities = 888/1162 (76%), Gaps = 87/1162 (7%)
Strand=Plus/Plus
Query 19 aaTGACAGACATTTCCAGTCTCTTTA-GAAACCGAAGTCGCAA-GGACCAACTT-GACTA 75
||||||||| |||| || | || ||| | | || || ||| || || || |||| || |
Sbjct 21 AATGACAGAAATTTTCACTTTCGTTACG-ATCCAAAATCGTAATGG-CC-ACTTCAAC-A 76
Query 76 -TGGTTTAACTGTGATAGTTATATCAACTCTTTGTTGGTGTCTTTGGCTCTACGCCAAAT 134
|| |||| || ||||| ||||| || ||| ||||| | | ||| | ||| ||||||
Sbjct 77 TTGTTTTAGCTACAATAGTCATATCCTCTGTTTTTTGGTATATATGGGTTTACACCAAAT 136
Query 135 GCAAACGGCGGTCTCCACCGTTGCCGCCGGGACCTTGGGGCCTTCCCATTATCGGAAACC 194
|||||||| || ||||||| | |||||||||||| |||| || ||| | |||||||||
Sbjct 137 CCAAACGGCTGTTTCCACCGATACCGCCGGGACCTCGGGGTCTACCCGTCGTCGGAAACC 196
Query 195 TTCCATTCCTCCAACCGGAGCTTCACACCTACTTCCA-AGGGCTGGCT-AAAAAGCACGG 252
| ||||||||||| |||||||||||||||||||| || | | || ||| ||||| |||||
Sbjct 197 TCCCATTCCTCCACCCGGAGCTTCACACCTACTTTCACA-GTCTAGCTCAAAAA-CACGG 254
Query 253 TCCCATTTTCAAACTCTGGCTCGGGGCCAAGCTCACAATCGTGGTCACCTCTTCTGAAG- 311
||| || ||||||| ||||||||||| || || || ||||| | |||||||||||||
Sbjct 255 ACCCGTTCTCAAACTATGGCTCGGGGCGAAACTAACCATCGTAATAACCTCTTCTGAAGC 314
Query 312 TAGCGCAAGAGATTCTCAA-AACGAATGACATCATCTTCGCGAACCACGATG-TCCCTGC 369
| | | |||||||| || ||| |||||| ||||||| ||||||||||| | |||| |
Sbjct 315 CA-CACGCGAGATTCT-AAGAACCAATGACGTCATCTTTGCGAACCACGACGTTCCC-G- 370
Query 370 T-GTGGGCCCTG-TTAACACGTATGGTGGTACGGAGATCA-T-T-TGGTCGCCGTATGGA 424
| || || | | | | |||||| ||||| || ||| || | | ||||| ||||| |||
Sbjct 371 TCGTAGGTTC-GCTCAGCACGTACGGTGG--CGTAGA-CATTGTCTGGTCACCGTACGGA 426
Query 425 CCA-AAGTGGCGGATGCTGAGGAAGCTATGTGTTAATAGGATACTGAGAAACGCCATGTT 483
|| || ||||| |||||||| || | || |||| | || | || ||||||| |||
Sbjct 427 ACAGAA-TGGCGAATGCTGAGAAAAATCTGCATTAACAAAATGTTAAGCAACGCCACGTT 485
Query 484 GGATTC-----C--TCCACTGACCTCCGTCGCCGA-GAGACTC-GGCAAACCGTCCGGTA 534
|||||| | || | | | || || |||| | ||||| | || ||| ||||| ||
Sbjct 486 GGATTCAAATTCTTTCAATTTA-CTTCGCCGCC-AGGAGAC-CAAGCGAACAGTCCGATA 542
Query 535 TTTGGCGGACCAGGCTCGGGTCGGTTC-ACCAGTTAACCTGGGAGAACAAATATTCT-TG 592
|||||| |||| |||||||| ||| || || |||||| | |||||||||||||| | |
Sbjct 543 TTTGGCAGACCGGGCTCGGGCCGGGTCTGCC-GTTAACGTTGGAGAACAAATATT-TGTC 600
Query 593 ATGATGTTGAATGT--TG-TGACGCAGATGCTATGGGGAACAACGGTTAAGGAAGAAGA- 648
| ||| || ||||| || | || |||||| | |||||| | |||||| ||| | |||
Sbjct 601 ACGATATTAAATGTGGTGATCACTCAGATGTTGTGGGGAGCTACGGTTGCGGATGGAGAG 660
Query 649 GAGGGAGGT--TGTTGGAGCCGAGTTCTTAGAGGTGATTA-GAGAGA-TGAACGACCTCC 704
||| ||| | ||||||||| |||||||| || |||||| || | | || | | | |
Sbjct 661 GAGAGAGATAGTGTTGGAGCTGAGTTCTTGGAACTGATTACGATA-ATTG-ATGTTGT-C 717
Query 705 TGCTAGTGCCCAATATCTCCGACTTTTTCCCGGTATTGAGCCGGTTTGATCTTCAGGGTT 764
| | ||| ||| |||| || ||||| ||||| |||||||||||||||||||||||||
Sbjct 718 -G-GAAAGCCGAATGTCTCTGATTTTTTTCCGGTTTTGAGCCGGTTTGATCTTCAGGGTT 775
Query 765 TGGCTAAGCGTATGCGAAGACCGGCTCAAAGAATGGATCAGATGTTCGACCGGATCATTA 824
||||||||||| |||| || ||||||| || ||||| ||||||||||||||||| || |
Sbjct 776 TGGCTAAGCGTGTGCGTGGATCGGCTCAGAGGATGGACCAGATGTTCGACCGGATTATAA 835
Query 825 ACCAACGG-TTGGGGATGGATA-GGGACAGTAGTGACGGGAGA-G-CTGTGGATTTTCTA 880
| |||||| || | ||||||| |||| |||| | |||| | | | || |||||| |
Sbjct 836 ATCAACGGGTTAGA-ATGGATAAGGGA-AGTAA--A-GGGA-ACGGC-GTAGATTTTTT- 887
Query 881 GACG-TCTTGTTGAAAG-TCAAGGATGAAGAAGCTGAAAAGACGAAGTTGACCATGAACG 938
|| | | |||||||| | | ||||| ||||| |||||| | | || ||||||||
Sbjct 888 GATGGTTTTGTTGAATGCT-AAGGAAGAAGA---TGAAAA--C-ATGT---CCATGAACC 937
Query 939 ATGTCAAGGCCGTACTCATGGACATGGTGCTCGGTGGTACAGACACATCACTGCACGTAA 998
||||||||||| | || |||||||||||||| ||||||||||||||||| || || ||
Sbjct 938 ATGTCAAGGCCTTCCTTATGGACATGGTGCTTGGTGGTACAGACACATCTTTGAACACAA 997
Query 999 TAGAATTCGCGATGGCCGAGCT-ATTACACAACCCCGATATCATGAAGAGAGCTCAACAA 1057
|||| ||||| ||||| ||||| || | |||| || || |||||||||| ||||||||||
Sbjct 998 TAGAGTTCGCAATGGCAGAGCTTATAA-ACAAACCGGAGATCATGAAGAAAGCTCAACAA 1056
Query 1058 GAGGTTGACAAAGTTGTGGGAAAAGAAAAAGTT-GTGGAAGAATCTCACATCTCTAAACT 1116
||| | |||||||||||||| ||| || || | || |||||| | || ||| || ||||
Sbjct 1057 GAGCTCGACAAAGTTGTGGGTAAA-AATAACATCGTAGAAGAAACACATATCACTTAACT 1115
Query 1117 TCCATACATTCTCGCCATTATG 1138
||||||||||||| ||||||||
Sbjct 1116 TCCATACATTCTCTCCATTATG 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64067792090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5