BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G44620.1 Length=1708 Score E Sequences producing significant alignments: (Bits) Value Ahg333172 jgi|Araly1|333172|fgenesh1_pm.C_scaffold_90000001 1694 0.0 Ahg494525 jgi|Araly1|494525|fgenesh2_kg.8__341__AT5G44620.1 1397 0.0 Ahg943136 jgi|Araly1|943136|scaffold_603680.1 547 8e-155 > Ahg333172 jgi|Araly1|333172|fgenesh1_pm.C_scaffold_90000001 Length=1290 Score = 1694 bits (917), Expect = 0.0 Identities = 1078/1154 (93%), Gaps = 17/1154 (1%) Strand=Plus/Plus Query 425 CCAA-AGTGGCGGATGCTGAGGAAGCTATGTGTTAATAGGATACTGAG-AAACGCCATGT 482 |||| | ||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| Sbjct 138 CCAATACTGGCGGATGCTGAGGAAACTATGTGTTAATAGGATACTGAGCAAA-GCCATGT 196 Query 483 TGGATTCCTCCACTGACCTCCGTCGCCGAGAGACTCGGCAAACCGTCCGGTATTTGGCGG 542 |||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||| Sbjct 197 TGGATTCCTCCACTGAACTCCGTCGACAAGAGACTCGGCAAACCGTCCGGTATTTGGCGG 256 Query 543 ACCAGGCTCGGGTCGGTTCACCAGTTAACCTGGGAGAACAAATATTCTTGATGATGTTGA 602 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 257 ACCAGGCTCGGGTCGGTTCGCCGGTTAACCTGGGAGAACAAATATTCTTGATGATGTTGA 316 Query 603 ATGTTGTGACGCAGATGCTATGGGGAACAACGGTTAAGGAAGAAGAGAGGGAGGTTGTTG 662 ||||| | ||||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 317 ATGTTATTACGCAGATGCTATGGGGCACAACGGTTAAGGAAGAAGAGAGGGATGTTGTTG 376 Query 663 GAGCCGAGTTCTTAGAGGTGATTAGAGAGATGAACGACCTCCTGCTAGTGCCCAATATCT 722 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 377 GGGCCGAGTTCTTAGAGGTGATTAGAGAGATGAACGACCTCCTGCTAGTGCCCAATATCT 436 Query 723 CCGACTTTTTCCCGGTATTGAGCCGGTTTGATCTTCAGGGTTTGGCTAAGCGTATGCGAA 782 |||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||| || Sbjct 437 CCGACTTTTTTCCGGTTTTGAGCCGGTTTGATCTTCAGGGTTTGGTTAAGCGTATGCAAA 496 Query 783 GACCGGCTCAAAGAATGGATCAGATGTTCGACCGGATCATTAACCAACGGTTGGGGATGG 842 ||||||||||||| |||||||||||||| ||||||||||| ||||||||| |||||| || Sbjct 497 GACCGGCTCAAAGGATGGATCAGATGTTTGACCGGATCATCAACCAACGGCTGGGGAAGG 556 Query 843 ATAGGGACAGTAGTGACGGGAGAGCTGTGGATTTTCTAGACGTCTTGTTGAAAGTCAAGG 902 |||||||||||||||| |||||||||| ||||||||| || |||||||||||||| |||| Sbjct 557 ATAGGGACAGTAGTGATGGGAGAGCTGGGGATTTTCTTGATGTCTTGTTGAAAGTTAAGG 616 Query 903 ATGAAGAAGCTGAAAAGACGAAGTTGACCATGAACGATGTCAAGGCCGTACTCATGGACA 962 |||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 617 ATGAAGAAAATGAAAAGACGAATTTGACCATGAACGATGTCAAGGCCGTGCTCATGGACA 676 Query 963 TGGTGCTCGGTGGTACAGACACATCACTGCACGTAATAGAATTCGCGATGGCCGAGCTAT 1022 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| Sbjct 677 TGGTGCTCGGTGGTACAGACACATCACTGCACGTTATAGAATTCGCGATGGCCGAGTTAT 736 Query 1023 TACACAACCCCGATATCATGAAGAGAGCTCAACAAGAGGTTGACAAAGTTGTGGGAAAAG 1082 |||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct 737 TACACAACCCGGATATCATGAAGAGAGCTCAACAAGAGCTTGACAAAGTTGTGGGCAAAG 796 Query 1083 AAAAAGTTGTGGAAGAATCTCACATCTCTAAACTTCCATACATTCTCGCCATTATGAAAG 1142 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 797 AAAAAGTTGTGGACGAATCTCACATCTCTAAACTTCCATACATTCTTGCCATTATGAAAG 856 Query 1143 AAACTCTAAGGCTTCACACGGTTGCTCCACTCCTTGTTCCTCGGCGCCCGTCACAAACCA 1202 |||||||||||||||||||| || |||||||||||||||||| || |||||| |||||| Sbjct 857 AAACTCTAAGGCTTCACACGATTATTCCACTCCTTGTTCCTCGCCGACCGTCAAAAACCA 916 Query 1203 CCGTGGTGGGCGGCTTCACCATCCCTAAAGATTCAAAGATTTTCATCAACGCGTGGGCAA 1262 ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| | Sbjct 917 CCGTGGTGGGCGGCTTCACCATCCCTAAAGATTCAAAGATTTTCATCAATGTGTGGGCGA 976 Query 1263 TCCATAGGAACCCGAATGTATGGGAGAATCCACTGAAGTTTGATCCCGACAGGTTTCTGG 1322 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 977 TCCATAGGAACCCCAATGTATGGGAGAATCCACTAAAGTTTGATCCCGACAGGTTTCTTG 1036 Query 1323 ATA-TGTCTTATGACTTCAAAGGAAATGACTTCAATTATCTACCGTTTGGGTCTGGTCGT 1381 ||| | |||||||||||||| |||||||||||||| ||| |||||||||| Sbjct 1037 ATAAT-TCTTATGACTTCAAGGGAAATGACTTCAACTATTTACCGTTTGG---------- 1085 Query 1382 AGGATATGCGTGGGAATGGCTATGGGCGAGAGGGTTGTTCTTTACAATCTCGCTACGTTT 1441 | ||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 1086 A--ATATGTGTGGGAATGGCCATGGGCGAGAGGGTAGTTCTTTACAATCTCGCTACGTTT 1143 Query 1442 TTGCATTCTTTTGATTGGAAAATTCCGCAAGGAGAGAGAGTGGAGGTCGAGGAGAAGTTT 1501 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 1144 TTGCATTCTTTTGATTGGAAAATTCCACAAGGAGAGAGAGTGGAGGTGGAGGAGAAGTTT 1203 Query 1502 GGGATCGTGTTGGAGCTAAAGAATCCACTTGTTGCCACGCCCGTTCTAAGGTTGTCCGAT 1561 |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| Sbjct 1204 GGGATCGTGTTGGAGCTAAAGAATCCACTTGTTGCCGCGCCCGTACTAAGGTTGTCCGAT 1263 Query 1562 CCAAATCTTTATCT 1575 |||||||||||||| Sbjct 1264 CCAAATCTTTATCT 1277 Score = 147 bits (79), Expect = 4e-34 Identities = 95/103 (92%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 237 TGGCTAAAAAGCACGGTCCCATTTTCAAACTCTGGCTCGGGGCCAAGCTCACAATCGTGG 296 ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 2 TGGCTAAAAAGCACGGTCCCATTTTCAAACTCTGGCTCGGGGCCAAGCTGGCAATTGTGG 61 Query 297 TCACCTCTTCTGAAGTAGCGCAAGAGATTCTCAAAACGAATGA 339 |||| |||||||||||||| ||||||||| | ||||| ||||| Sbjct 62 TCACATCTTCTGAAGTAGCCCAAGAGATTTTTAAAACAAATGA 104 > Ahg494525 jgi|Araly1|494525|fgenesh2_kg.8__341__AT5G44620.1 Length=1436 Score = 1397 bits (756), Expect = 0.0 Identities = 1064/1202 (89%), Gaps = 64/1202 (5%) Strand=Plus/Plus Query 473 AACGCCATGTTGGATTCCTCCACTGACCTCCGTCGCCGAGAGACTCGGCAAACCGTCCGG 532 ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct 292 AACGCCATGTTGGATTCTTCCACTGACCTCCGTCGCCGAGAGACTCGGAAAACCGTCCGG 351 Query 533 TATTTGGCGGACCAGGCTCGGGTCGGTTCACCAGTTAACCTGGGAGAACAAATATTCTTG 592 |||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 352 TATTTGGCGGGCCAGGCTCGGGTCGGTTCACCGGTTAACTTGGGAGAACAAATATTCTTG 411 Query 593 ATGATGTTGAATGTTGTGACGCAGATGCTATGGGGAACAACGGT-TAAGGAAGAAGAGAG 651 ||||||||||||||||||||||||||||||||||| | ||||| |||| | ||||||| Sbjct 412 ATGATGTTGAATGTTGTGACGCAGATGCTATGGGGCAGGACGGTCAAAGGCA-AAGAGAG 470 Query 652 GGAG-GTTGTTGGAGCCGAGTTCTTAGAGGTGATTAGAGAGATGAACGACCTCCTGCTAG 710 |||| | ||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 471 GGAGAG-TGTCGTAGCCGAGTTCTTAGAGGTGATTAGAGAGATGAACGACCTCCTGCTAG 529 Query 711 TGCCCAATATCTCCGACTTTTTCCCGGTATTGAGCCGGTTTGATCTTCAGGGTTTGGCTA 770 |||||||||| ||||||||||| |||| ||||||||| |||||||| || ||||||| || Sbjct 530 TGCCCAATATATCCGACTTTTTTCCGGCATTGAGCCGATTTGATCTACAAGGTTTGGTTA 589 Query 771 AGCGTATGCGAAGACCGGCTCAAAGAATGGATCAGATGTTCGACCGGATCATTAACCAAC 830 ||||||||||| |||| ||||| || ||||| |||||||| |||||||| |||||||||| Sbjct 590 AGCGTATGCGAGGACCAGCTCAGAGGATGGACCAGATGTTTGACCGGATTATTAACCAAC 649 Query 831 GGTTGGGGATGGATAGGGACAGTAGTGACGGGAGAGCTGTGGATTTTCTAGACGTCTTGT 890 ||||||||||||||||||| | |||||| ||| | ||| |||||||| || | | | Sbjct 650 GGTTGGGGATGGATAGGGA-A--AGTGACTGGAAAACTGAAGATTTTCTGGATG-C--CT 703 Query 891 TGAAAGTCAAGGATGAAGAAGCTGAAAAGACGAAGTTGACCATGAACGATGTCAAGGC-C 949 | || |||| || | | | || ||||||||||||||||||||||| | Sbjct 704 T----GT------TGAA-AA--T----A-A--AA-TTGACCATGAACGATGTCAAGGCTC 742 Query 950 GTACTCATGGACATGGTGCTCGGTGGTACAGACACATCACTGCACGTAATAGAATTCGCG 1009 | ||| |||||||||||||||||||||||||||||||||| ||| | |||||||||||| Sbjct 743 -TGCTCGTGGACATGGTGCTCGGTGGTACAGACACATCACTACACATCATAGAATTCGCG 801 Query 1010 ATGGCCGAGCTATTACACAACCCCGATATCATGAAGAGAGCTCAACAAGAGGTTGACAAA 1069 ||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| Sbjct 802 ATGCCCGAGCTATTACACAACCCGGATATCATGAAGAGAGCTCAACAAGAGCTTGACAAA 861 Query 1070 GTTGTGGGAAAAGAAAAAGTTGTGGAAGAATCTCACATCTCTAAACTTCCATACATTCTC 1129 |||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 862 GTTGTGGGCAAAGAAAAGGTTGTGGACGAATCTCACATCTCTAAACTTCCATACATTCTT 921 Query 1130 GCCATTATGAAAGAAACTCTAAGGCTTCACACGGTTGCTCCACTCCTTGTTCCTCGGCGC 1189 ||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||| || Sbjct 922 GCCATTATGAAAGAAACTCAAAGGCTTCACACGATTGTTCCACTCCTTGTTCCTCGCCGA 981 Query 1190 CCGTCACAAACCACCGTGGTGGGCGGCTTCACCATCCCTAAAGATTCAAAGATTTTCATC 1249 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 982 CCGTCAAAAACCACCGTGGTGGGCGGCTTCACCATCCCTAAAGATTCAAAGATTTTCATC 1041 Query 1250 AACGCGTGGGCAATCCATAGGAACCCGAATGTATGGGAGAATCCACTGAAGTTTGATCCC 1309 || | |||||| |||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 1042 AATGTGTGGGCGATCCATAGGAACCCCAATGTATGGGAGAATCCACTAAAGTTTGATCCC 1101 Query 1310 GACAGGTTTCTGGATATGTCTTATGACTTCAAAGGAAATGACTTCAATTATCTACCGTTT 1369 ||||||||||| |||| ||||||||||||||| |||||||||||||| ||| |||||||| Sbjct 1102 GACAGGTTTCTTGATAAGTCTTATGACTTCAAGGGAAATGACTTCAACTATTTACCGTTT 1161 Query 1370 GGGTCTGGTCGTAGGATATGCGTGGGAATGGCTATGGGCGAGAGGGTTGTTCTTTACAAT 1429 |||||||||||||| ||||| || ||| | || || ||||||||| Sbjct 1162 GGGTCTGGTCGTAGAATATG--TG----TGG-T-TG----------TT---CTTTACAAT 1200 Query 1430 CTCGCTACGTTTTTGCATTCTTTTGATTGGAAAATTCCGCAAGGAGAGAGAGTGGAGGTC 1489 ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1201 CTCGCTACGTTATTGCATTCTTTTGATTGGAAAATTCCACAAGGAGAGAGAGTGGAGGTG 1260 Query 1490 GAGGAGAAGTTTGGGATCGTGTTGGAGCTAAAGAATCCACTTGTTGCCACGCCCGTT-CT 1548 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 1261 GAGGAGAAGTTTGGGATCGTGTTGGAGCTAAAGAATCCACTTGTTGCCACGCCC-TTACT 1319 Query 1549 AAGGTTGTCCGATCCAAATCTTTATCTCTAGGGTCTT-AAGTTCAACACAAAGGAA--CT 1605 ||||||||||||||||||||||||||| ||| || || ||||||||||||||| || || Sbjct 1320 AAGGTTGTCCGATCCAAATCTTTATCTTTAGAGT-TTCAAGTTCAACACAAAGAAATACT 1378 Query 1606 GAATGTTCTACAATTCGAGCTTATTTGTGTGTCTTGTATGATTTAATAAAAGCCGTTCAA 1665 ||||||| |||| || |||||||||||| ||| |||| |||||||||||||||| ||| Sbjct 1379 GAATGTTATACAG--CGGGCTTATTTGTGT-TCT-GTATTATTTAATAAAAGCCGTACAA 1434 Query 1666 TG 1667 || Sbjct 1435 TG 1436 Score = 291 bits (157), Expect = 2e-77 Identities = 236/272 (87%), Gaps = 13/272 (5%) Strand=Plus/Plus Query 136 CAAACGGCGGTCTCCACCGTTGCCGCCGGGACCTTGGGGCCTTCCCATTATCGGAAACCT 195 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 14 CAAACCGCGGTCTCCACCGTTGCCGCCGGGACCTTGGGGCCTTCCCATTATCGGATTCCT 73 Query 196 TCCATTCCTCCAACCGGAGCTTCACACCTACTTCCAAGGGCTGGCTAAAAAGCACGGTCC 255 |||||||||| |||||||| |||||||| | ||||||||||||| ||||| Sbjct 74 TCCATTCCTCAAACCGGAG-----------CTTCCAAGAGTTGGCTAAAAAGCATGGTCC 122 Query 256 CATTTTCAAACTCTGGCTCGGGGCCAAGCTCACAATCGTGGTCACCTCTTCTGAAGTAGC 315 |||||||||||||||||||||||| || || ||||||||||||||||||||||||||||| Sbjct 123 CATTTTCAAACTCTGGCTCGGGGCGAAACTGACAATCGTGGTCACCTCTTCTGAAGTAGC 182 Query 316 GCAAGAGATTCTCAAAACGAATGACATCATCTTCGCGAACCACGATGTCCCTGCTGTGGG 375 ||||| ||||||| ||||||||| ||||||||||| ||||||||||||||||| || | Sbjct 183 CCAAGATATTCTCAGAACGAATGATATCATCTTCGCAAACCACGATGTCCCTGCCGTTGC 242 Query 376 -CCCTGTTAACACGTATGGTGGTACGGAGATC 406 ||| | || ||||| ||||||| ||||||| Sbjct 243 TCCC-GCCAATACGTACGGTGGTATGGAGATC 273 > Ahg943136 jgi|Araly1|943136|scaffold_603680.1 Length=1137 Score = 547 bits (296), Expect = 8e-155 Identities = 888/1162 (76%), Gaps = 87/1162 (7%) Strand=Plus/Plus Query 19 aaTGACAGACATTTCCAGTCTCTTTA-GAAACCGAAGTCGCAA-GGACCAACTT-GACTA 75 ||||||||| |||| || | || ||| | | || || ||| || || || |||| || | Sbjct 21 AATGACAGAAATTTTCACTTTCGTTACG-ATCCAAAATCGTAATGG-CC-ACTTCAAC-A 76 Query 76 -TGGTTTAACTGTGATAGTTATATCAACTCTTTGTTGGTGTCTTTGGCTCTACGCCAAAT 134 || |||| || ||||| ||||| || ||| ||||| | | ||| | ||| |||||| Sbjct 77 TTGTTTTAGCTACAATAGTCATATCCTCTGTTTTTTGGTATATATGGGTTTACACCAAAT 136 Query 135 GCAAACGGCGGTCTCCACCGTTGCCGCCGGGACCTTGGGGCCTTCCCATTATCGGAAACC 194 |||||||| || ||||||| | |||||||||||| |||| || ||| | ||||||||| Sbjct 137 CCAAACGGCTGTTTCCACCGATACCGCCGGGACCTCGGGGTCTACCCGTCGTCGGAAACC 196 Query 195 TTCCATTCCTCCAACCGGAGCTTCACACCTACTTCCA-AGGGCTGGCT-AAAAAGCACGG 252 | ||||||||||| |||||||||||||||||||| || | | || ||| ||||| ||||| Sbjct 197 TCCCATTCCTCCACCCGGAGCTTCACACCTACTTTCACA-GTCTAGCTCAAAAA-CACGG 254 Query 253 TCCCATTTTCAAACTCTGGCTCGGGGCCAAGCTCACAATCGTGGTCACCTCTTCTGAAG- 311 ||| || ||||||| ||||||||||| || || || ||||| | ||||||||||||| Sbjct 255 ACCCGTTCTCAAACTATGGCTCGGGGCGAAACTAACCATCGTAATAACCTCTTCTGAAGC 314 Query 312 TAGCGCAAGAGATTCTCAA-AACGAATGACATCATCTTCGCGAACCACGATG-TCCCTGC 369 | | | |||||||| || ||| |||||| ||||||| ||||||||||| | |||| | Sbjct 315 CA-CACGCGAGATTCT-AAGAACCAATGACGTCATCTTTGCGAACCACGACGTTCCC-G- 370 Query 370 T-GTGGGCCCTG-TTAACACGTATGGTGGTACGGAGATCA-T-T-TGGTCGCCGTATGGA 424 | || || | | | | |||||| ||||| || ||| || | | ||||| ||||| ||| Sbjct 371 TCGTAGGTTC-GCTCAGCACGTACGGTGG--CGTAGA-CATTGTCTGGTCACCGTACGGA 426 Query 425 CCA-AAGTGGCGGATGCTGAGGAAGCTATGTGTTAATAGGATACTGAGAAACGCCATGTT 483 || || ||||| |||||||| || | || |||| | || | || ||||||| ||| Sbjct 427 ACAGAA-TGGCGAATGCTGAGAAAAATCTGCATTAACAAAATGTTAAGCAACGCCACGTT 485 Query 484 GGATTC-----C--TCCACTGACCTCCGTCGCCGA-GAGACTC-GGCAAACCGTCCGGTA 534 |||||| | || | | | || || |||| | ||||| | || ||| ||||| || Sbjct 486 GGATTCAAATTCTTTCAATTTA-CTTCGCCGCC-AGGAGAC-CAAGCGAACAGTCCGATA 542 Query 535 TTTGGCGGACCAGGCTCGGGTCGGTTC-ACCAGTTAACCTGGGAGAACAAATATTCT-TG 592 |||||| |||| |||||||| ||| || || |||||| | |||||||||||||| | | Sbjct 543 TTTGGCAGACCGGGCTCGGGCCGGGTCTGCC-GTTAACGTTGGAGAACAAATATT-TGTC 600 Query 593 ATGATGTTGAATGT--TG-TGACGCAGATGCTATGGGGAACAACGGTTAAGGAAGAAGA- 648 | ||| || ||||| || | || |||||| | |||||| | |||||| ||| | ||| Sbjct 601 ACGATATTAAATGTGGTGATCACTCAGATGTTGTGGGGAGCTACGGTTGCGGATGGAGAG 660 Query 649 GAGGGAGGT--TGTTGGAGCCGAGTTCTTAGAGGTGATTA-GAGAGA-TGAACGACCTCC 704 ||| ||| | ||||||||| |||||||| || |||||| || | | || | | | | Sbjct 661 GAGAGAGATAGTGTTGGAGCTGAGTTCTTGGAACTGATTACGATA-ATTG-ATGTTGT-C 717 Query 705 TGCTAGTGCCCAATATCTCCGACTTTTTCCCGGTATTGAGCCGGTTTGATCTTCAGGGTT 764 | | ||| ||| |||| || ||||| ||||| ||||||||||||||||||||||||| Sbjct 718 -G-GAAAGCCGAATGTCTCTGATTTTTTTCCGGTTTTGAGCCGGTTTGATCTTCAGGGTT 775 Query 765 TGGCTAAGCGTATGCGAAGACCGGCTCAAAGAATGGATCAGATGTTCGACCGGATCATTA 824 ||||||||||| |||| || ||||||| || ||||| ||||||||||||||||| || | Sbjct 776 TGGCTAAGCGTGTGCGTGGATCGGCTCAGAGGATGGACCAGATGTTCGACCGGATTATAA 835 Query 825 ACCAACGG-TTGGGGATGGATA-GGGACAGTAGTGACGGGAGA-G-CTGTGGATTTTCTA 880 | |||||| || | ||||||| |||| |||| | |||| | | | || |||||| | Sbjct 836 ATCAACGGGTTAGA-ATGGATAAGGGA-AGTAA--A-GGGA-ACGGC-GTAGATTTTTT- 887 Query 881 GACG-TCTTGTTGAAAG-TCAAGGATGAAGAAGCTGAAAAGACGAAGTTGACCATGAACG 938 || | | |||||||| | | ||||| ||||| |||||| | | || |||||||| Sbjct 888 GATGGTTTTGTTGAATGCT-AAGGAAGAAGA---TGAAAA--C-ATGT---CCATGAACC 937 Query 939 ATGTCAAGGCCGTACTCATGGACATGGTGCTCGGTGGTACAGACACATCACTGCACGTAA 998 ||||||||||| | || |||||||||||||| ||||||||||||||||| || || || Sbjct 938 ATGTCAAGGCCTTCCTTATGGACATGGTGCTTGGTGGTACAGACACATCTTTGAACACAA 997 Query 999 TAGAATTCGCGATGGCCGAGCT-ATTACACAACCCCGATATCATGAAGAGAGCTCAACAA 1057 |||| ||||| ||||| ||||| || | |||| || || |||||||||| |||||||||| Sbjct 998 TAGAGTTCGCAATGGCAGAGCTTATAA-ACAAACCGGAGATCATGAAGAAAGCTCAACAA 1056 Query 1058 GAGGTTGACAAAGTTGTGGGAAAAGAAAAAGTT-GTGGAAGAATCTCACATCTCTAAACT 1116 ||| | |||||||||||||| ||| || || | || |||||| | || ||| || |||| Sbjct 1057 GAGCTCGACAAAGTTGTGGGTAAA-AATAACATCGTAGAAGAAACACATATCACTTAACT 1115 Query 1117 TCCATACATTCTCGCCATTATG 1138 ||||||||||||| |||||||| Sbjct 1116 TCCATACATTCTCTCCATTATG 1137 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64067792090 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5