BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44630.1
Length=1699
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330931 jgi|Araly1|330931|fgenesh1_pm.C_scaffold_8000274 2403 0.0
> Ahg330931 jgi|Araly1|330931|fgenesh1_pm.C_scaffold_8000274
Length=1674
Score = 2403 bits (1301), Expect = 0.0
Identities = 1529/1640 (93%), Gaps = 12/1640 (1%)
Strand=Plus/Plus
Query 66 ATTTTACAAAATTGCCATCCTCCCAATGGGGTGATCAGTTCCTCAAGTTTTCCATTGCTG 125
||||||||||||||||| |||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 41 ATTTTACAAAATTGCCACCCTCTCAATGGGGTGATCAGTTCCTCAAATTTTCCATGGCTG 100
Query 126 ATTCGGATTTTGATGTC-CTTGAAAGAGAGATTGAAGTACTAAAGCCTAAAGTAAGAGAG 184
|||| |||||||||| | ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 101 ATTCTGATTTTGATG-CTCTTGAAAGAGAGATTAAAGTACTAAAGCCTAAAGTAAGAGAG 159
Query 185 AACATATTCGTGTCGTCTTCCACAGACAAAGACGCGATGAAAAAG-ACAATTCTTTCTAT 243
||||||||| | | |||||||| |||||||||||| ||| ||||| ||||||||||||||
Sbjct 160 AACATATTCATTTTGTCTTCCAGAGACAAAGACGCAATG-AAAAGAACAATTCTTTCTAT 218
Query 244 TCATTTTCTGGACAGTCTTGGTCTCTCTTATCATTTTGAGAAGGAAATCGAAGAGAGCCT 303
|||||||||| ||||||||||||| || || |||||||||||||| |||||||| |||||
Sbjct 219 TCATTTTCTGAACAGTCTTGGTCTTTCATACCATTTTGAGAAGGAGATCGAAGAAAGCCT 278
Query 304 AAAACATGCTTTCGA-GAAGATAGAAGATTTGATCGCTGATGAAAATAAATTGCACACAA 362
|||||||||||||| | || |||||||||||||||| ||||||||| | ||| ||||||
Sbjct 279 GAAACATGCTTTCGACG-AGGTAGAAGATTTGATCGCGGATGAAAATGATTTGTACACAA 337
Query 363 TCTCCACCATCTTCCGAGTTTTCAGGACATACGGTTACTACATGTCTTCGGATGTTTTCA 422
||||||||||||| ||||||||||| |||||||||||| |||||||||||||||| ||||
Sbjct 338 TCTCCACCATCTTTCGAGTTTTCAGAACATACGGTTACGACATGTCTTCGGATGTGTTCA 397
Query 423 AGATATTCAAAGGAGACGATGGTAAATTCAAGGAAAGTTTAATAGAAGATGTCAAGGGTA 482
| | ||||||||||||||| |||||||||||||||||||||||||||||||| | |||||
Sbjct 398 ACAGATTCAAAGGAGACGACGGTAAATTCAAGGAAAGTTTAATAGAAGATGTTAGGGGTA 457
Query 483 TGCTAAGCTTCTACGAAGCAGTGCACTTTGGGACAACGACAGATCATATATTGGATGAAG 542
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 458 TGCTAAGCCTCTACGAAGCAGTGCACTTTGGGACAACGAAAGATCATATATTGGATGAAA 517
Query 543 CTTTAAGCTTCACATTGAACCACTTGGAGTCACTAGCTACAGGTCGTAGAGCGAGCCCAC 602
| | ||||||||||||||||||||||| ||||||||||| |||| |||| | ||||||
Sbjct 518 CCTCGTGCTTCACATTGAACCACTTGGAGCCACTAGCTACATGTCGCAGAGAGTGCCCAC 577
Query 603 CACATATTTCAAAGCTTATACAAAATGCTC-TTCACATACCTCAGCACCGAAACATCCAA 661
|||||||||||||||||||||||||| | | ||||||||||||||||||| |||||||||
Sbjct 578 CACATATTTCAAAGCTTATACAAAATTC-CATTCACATACCTCAGCACCGGAACATCCAA 636
Query 662 GCGT-TGGTTGCAAGGGAGTATATCTCGTTCTATGAACACGAAGAGGACCACGACGAAAC 720
|| | |||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 637 GC-TCTGGTTGCAAGGGAGTATATCTCGTTCTATGAACACGAAGAAGACCGCGACGAAAT 695
Query 721 ACTTCTCAAGCTAGCTAAGCTCAATTTCAAGTTCTTGCAGCTTCATTACTTCCAAGAATT 780
|||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 ACTTTTTAAGCTAGCCAAGCTCAATTTCAAGTTCTTGCAGCTTCATTACTTCCAAGAATT 755
Query 781 AAAAACCATCACAATGTGGTGGACGAAATTAGACCATACATCAAACCTTCCACCAAACTT 840
||||||||||||||||||||||| | |||||||||||||||||||| ||||||| |||||
Sbjct 756 AAAAACCATCACAATGTGGTGGAGGGAATTAGACCATACATCAAACTTTCCACCTAACTT 815
Query 841 CAGAGAGAGAACTGTAGAGACATGGTTTGCAGCATTGATGATGTACTTCGAGCCACAATT 900
|||||| |||||||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 816 CAGAGAAAGAACTGTAGAGACTTGGTTTGCAGCATTGATGATGTACTTTGAGCCACAGTT 875
Query 901 TTCACTTGGGAGAATTATGTCGGCTAAGTTATACTTAGTAATAACATTTCTAGACGACGC 960
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 876 TTCACTTGGGAGAATTATGTCGGCTAAGTTATACTTAGTAATTACATTTCTAGACGACGC 935
Query 961 TTGCGATACTT-ATGGTTCAATTTCTGAAGTTGAAAGCCTGGCCGATTGTTTGGAAAGAT 1019
||| |||| | ||||||||||| |||| ||||| ||||||| ||||||| |||||||||
Sbjct 936 TTGTGATA-TACATGGTTCAATTCCTGATGTTGAGAGCCTGGTCGATTGTCTGGAAAGAT 994
Query 1020 GGGATCCAGATTACATGGAAAATCTTCAAGGTCACATGAAGACTGCCTTCAAATTTGTGA 1079
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 995 GGGATCCGGATTACATGGAAAATCTTCATGGTCACATGAAGACTGCCTTCAAATTTGTGA 1054
Query 1080 TGTATCTTTTTAAAGAGTATGAAGAAATACTAAGGTCACAAGGAAGATCCTTTGTGTTGG 1139
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1055 TGTATCTTTTCGAAGAGTATGAAGAAATATTAAGGTCACAAGGAAGATCCTTTGTGTTGG 1114
Query 1140 AGAAAATGATAGAAGAGTTCAAGATTATTGCTAGGAAAAACCTCGAACTTGTCAAATGGG 1199
|||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1115 AGAAGATGATAGAGGAGTTCAAGATAATTGCTAGGAAAAACCTCGAACTTGTCAAATGGG 1174
Query 1200 CACGTGGAGGTCATGTTCCTAGCTTTGATGAGTATATAGAGTCTGGTGGAGCCGAGATTG 1259
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 CACGGGGAGGTCATGTGCCTAGCTTTGATGAGTATATAGAGTCTGGTGGAGCCGAGATTG 1234
Query 1260 GTACATATGCAACCATAGCATGTTCCATCATGGGACTTGGAGAGATTGGTAAGAAGGAAG 1319
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1235 GTACATATGCCACCATAGCATGTTCCATCATGGGACTTGGAGAGATTGGTAAGAAGAAAG 1294
Query 1320 CTTTTGAGTGGCTAATATCTAGACCAAAGCTCGTTCGGATTTTAGGTGCAAAGACCCGTC 1379
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1295 ATTTTGAGTGGCTAATATCTAGACCAAAGCTCGTTCGGACTTTAGGGGCAAAGACCCGTC 1354
Query 1380 TCATGGATGACATAGCCGACTTTGAGGAGGACATGGAAAAAGGTTACACTGCAAATGCAC 1439
||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||
Sbjct 1355 TCATGGATGACATAGCCGACTTTAAGGAGGATATGGAAAAAGGTTATACTGCAAATGCTG 1414
Query 1440 TCAACTATTACATGAACGAACACGGAGTTACAAAAGAAGAAGCCAGTAGAGAACTTGAAA 1499
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1415 TCAACTATTACATGAACGAACACGGAGTTACAAAAGAAGAAGCCAATAGAGAACTTGAAA 1474
Query 1500 AGATGAATGGAGATATGAACAAGATCGTAAACGAAGAATGCTTGAAGATAACTACCATGC 1559
||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||
Sbjct 1475 AGATGAATGGAGATATGAACAAGATTGTAAACGAAGAGTGCTTGAAGATAAGTACCATGC 1534
Query 1560 CACGCCGAATTCTTATGCAATCCGTCAATTATGCACGTTCATTGGATGTTCTCTATACCG 1619
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1535 CACGCCGAATTCTTATGCAATCCGTCAATTATGGACGTTCATTGGATGTTCTCTATACCG 1594
Query 1620 CGGATGATGTTTACAACCACCGCGAAGGAAAACTCAAAGAGTATATGAGGCTTTTGCTCG 1679
|||||||||| |||||||||||||||||||||||| | || |||||||| ||||||||||
Sbjct 1595 CGGATGATGTCTACAACCACCGCGAAGGAAAACTCCAGGAATATATGAGCCTTTTGCTCG 1654
Query 1680 TAGATCCTATACTTCTTTAG 1699
||||||| ||||||||||||
Sbjct 1655 TAGATCCCATACTTCTTTAG 1674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63724979885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5