BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44640.1
Length=1737
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494520 jgi|Araly1|494520|fgenesh2_kg.8__336__AT5G44640.1 2423 0.0
Ahg935380 jgi|Araly1|935380|scaffold_403368.1 1707 0.0
Ahg486479 jgi|Araly1|486479|fgenesh2_kg.5__2471__AT3G60130.1 850 0.0
Ahg481414 jgi|Araly1|481414|fgenesh2_kg.4__474__AT2G25630.1 490 1e-137
> Ahg494520 jgi|Araly1|494520|fgenesh2_kg.8__336__AT5G44640.1
Length=1705
Score = 2423 bits (1312), Expect = 0.0
Identities = 1583/1714 (92%), Gaps = 17/1714 (1%)
Strand=Plus/Plus
Query 1 ATGAGAACTAAATATTTTTCTTTGCTAGT-GTTTATTATTGTCTTGGCTTCTAATGAAGT 59
||||||||||||||| ||||||| ||||| | | || |||| |||||||| ||||||||
Sbjct 1 ATGAGAACTAAATATCTTTCTTTACTAGTAG-TCCTTGTTGTTTTGGCTTCCAATGAAGT 59
Query 60 TATAGCCAAGAAACACTCTTCAACACCTAAATTAAGAAGAAGTGATTTTCCAAAAGATTT 119
||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 60 TATTGCCAAGAAACACTCTTCAACACCTAAACTAAGAAGAAGTGATTTCCCAAAAGATTT 119
Query 120 TATTTTTGGAGCTGCAACGTCAGCTTACCAAGTCGAAGGAGCTGCTCATGAAGATGGTAG 179
| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCTTTTTGGAGCTGCAACATCTGCTTACCAAGTCGAAGGAGCTGCTCATGAAGATGGTAG 179
Query 180 AGGTCCAAGTATTTGGGATACATTCTCTGAAAAATATCCGGAGAAGATAAAAGATGGTAC 239
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 180 AGGACCAAGTATTTGGGATACATTCTCTGAAAAATATCCGGAAAAGATAAAAGATGGTAG 239
Query 240 CAATGGATCTATTGCAAGTGATTCTTACCATCTTTACAAGGAAGATGTGGGTTTACTACA 299
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 CAATGGATCTATTGCAAGTGATTCTTACCATCTTTACAAAGAAGATGTGGGTTTACTACA 299
Query 300 TCAAATTGGTTTCGGTGCCTATAGATTCTCTATCTCGTGGTCGAGGATCTTGCCACGTGG 359
|||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 300 TCAAATTGGTTTTGGTGCCTATAGATTCTCCATCTCGTGGTCGAGGATTTTGCCACGTGG 359
Query 360 GAATCTAAAAGGAGGTATCAACCAAGCTGGTATTGACTATTACAACAACTTGATCAATGA 419
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAATCTAAAAGGAGGAATCAACCAAGCTGGTATTGACTATTACAACAACTTGATCAATGA 419
Query 420 GCTTTTGTCTAAAGGAATTAAGCCATTCGCCACCATTTTTCATTGGGACACACCGCAA-A 478
|||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| |
Sbjct 420 GCTTTTGTCTAAAGGAATTAAGCCTTTCGCCACCATTTTCCATTGGGACACACCACAAGA 479
Query 479 GCCTTGAAGATGCTTACGGAGGATT-CTTTGGCGCGGAGATTGTGAATGACTTCCGCGAT 537
|||||||||||||||||||||| ||| || ||||||||||||||||| ||||| |||
Sbjct 480 TA-TTGAAGATGCTTACGGAGGATTTCTT-GGTGCGGAGATTGTGAATGATTTCCGTGAT 537
Query 538 TATGCGGATATTTGCTTCAAGAATTTTGGAGATCGAGTGAAGCATTGGATGACATTGAAC 597
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 538 TATGCGGATATTTGTTTCAAGAATTTTGGAGATCGAGTTAAGCATTGGATGACATTAAAC 597
Query 598 GAACCATTAACAGTTGTGCAACAAGGATATGTTGCTGGTGTAATGGCTCCTGGAAGGTGT 657
|| |||||||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 598 GAGCCATTAACTGTGGTGCAACAAGGATATGTTGCTGGTGTAATGGCTCCAGGAAGGTGC 657
Query 658 TCAAAATTCACAAACCCTAATTGCACCGCGGGAAATGGAGCTACCGAGCCTTATATTGTT 717
|||||||||||||| ||||||||||| |||||| |||||||||| |||||||||||||||
Sbjct 658 TCAAAATTCACAAATCCTAATTGCACTGCGGGAGATGGAGCTACAGAGCCTTATATTGTT 717
Query 718 GGTCACAACCTCATTCTTGCTCATGGAGAAGCAGTCAAAGTATATAGAGAAAAATATAAG 777
||||||||||| || ||||| || |||||||| |||| ||||| ||||||||||||||
Sbjct 718 GGTCACAACCTAATCCTTGCACACGGAGAAGCGGTCAGGGTATACAGAGAAAAATATAAA 777
Query 778 GCATCTCAAAAAGGTCAAGTTGGTATCGCTTTGAACGCGGGTTGGAACTTGCCTTATACC 837
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 778 GCATCTCAAAATGGTCAAGTTGGTATCGCTTTGAACGCGGGTTGGAACTTACCTTATACA 837
Query 838 GAATCAGCTGAAGATAGATTAGCTGCGGCACGAGCCATGGCCTTCACATTCGACTATTTC 897
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GAATCAGCCGAAGATAGGTTAGCTGCGGCACGAGCCATGGCCTTCACATTCGACTATTTC 897
Query 898 ATGGAGCCGCTTGTAACCGGTAAATATCCGGTTGACATGGTCAACAACGTAAAAGACGGT 957
|||||||||||||| ||||||||||| ||||||||||||||||| |||||||||| ||||
Sbjct 898 ATGGAGCCGCTTGTGACCGGTAAATACCCGGTTGACATGGTCAATAACGTAAAAGGCGGT 957
Query 958 CGCTTACCTACATTTACTGCAAAACAATCTAAGATGTTGAAAGG-ATCATATGATTTCAT 1016
|||||||||||||||||||| ||||||||||| ||| | ||||| |||||||||||||||
Sbjct 958 CGCTTACCTACATTTACTGCTAAACAATCTAAAATGCT-AAAGGGATCATATGATTTCAT 1016
Query 1017 TGGCATCAATTATTACTCATCTTCTTACGCTAAGGATGTTCCTTGCTCAAGCGAAAACGT 1076
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TGGCATCAATTATTACTCATCGTCTTACGCTAAGGATGTTCCTTGCTCAAGCGAAAACGT 1076
Query 1077 TACATTATTCTCTGATCCTTGTGCTAGCGTCACAGGTGAAAGAGAAGGAGTGCCTATCGG 1136
|||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1077 TACACAATTCTCTGATCCTTGTGCTAGCGTCACAGGTGAAAGAGAAGGAGTTCCCATCGG 1136
Query 1137 TCCAAAGGCAGCATCAGATTGGCTTTTGATATATCCAAAAGGAATTCGTGATCTCCTTCT 1196
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1137 TCCAAAGGCAGCATCGGATTGGCTTTTGATATATCCAAAGGGAATTCGTGATCTCCTCCT 1196
Query 1197 CTATGCAAAATACAAGTTCAAGGATCCTGTCATGTATATAACAGAGAATGGTAGAGATGA 1256
||||||||||||||||||||||||||||||| |||| ||||| ||||| || ||||||||
Sbjct 1197 CTATGCAAAATACAAGTTCAAGGATCCTGTCCTGTACATAACCGAGAACGGGAGAGATGA 1256
Query 1257 AGCTAGTACCGGTAAAATCGACCTTAAAGATAGTGAGAGGATCGATTACTACGCTCAACA 1316
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1257 AGCTAGTACCGGTAAAATCGACCTTAAAGATAGTGAGAGGATCGATTACTATGCTCGACA 1316
Query 1317 TTTGAAGATGGTTCAAGACGCTATATCAATTGGAGCCAATGTTAAAGGATTCTTTGCGTG 1376
|||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| ||
Sbjct 1317 TTTGAAGATGGTTCAAGACGCTATCTCAATTGGAGCCAATGTGAAGGGATTCTTTGCATG 1376
Query 1377 GTCTTTGCTAGATAATTTTGAATGGGCAACGGGCTACTCAGTCCGATTTGGACTAGTTTA 1436
||||||||||||||| |||||||||||||| || ||| | ||||| || |||||||||||
Sbjct 1377 GTCTTTGCTAGATAACTTTGAATGGGCAACAGGTTACGCGGTCCGGTTCGGACTAGTTTA 1436
Query 1437 CGTGGATTTCAACGATGGACGTAAGAGATATCCAAAGAAATCGGCAAAATGGTTCAGAAA 1496
|||||||||||| |||||||||||||||||||| |||||||| ||||||||||||| |||
Sbjct 1437 CGTGGATTTCAATGATGGACGTAAGAGATATCCTAAGAAATCAGCAAAATGGTTCACAAA 1496
Query 1497 GTTATTGAGCGAAAAGAAAAGGAATTGATGAAACATGCATCATTACATTATATTAACCAA 1556
|| ||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||
Sbjct 1497 ATTGTTGAGCGAAAAGAAAAGGAATTGATGAGACATGCATCATTCCATTATATTAACTAA 1556
Query 1557 CTAGGTTAATATATGCACGATGTGTAGTTTGTTTGAGTAACAATTTATCGTTCTG-TT-- 1613
|||||||||||||||||| ||| ||||||||||| | |||||||| || | || ||
Sbjct 1557 CTAGGTTAATATATGCACAATGGGTAGTTTGTTTAAATAACAATTCATAATA-TGGTTTG 1615
Query 1614 ATAAATATTGT-TTGGTTATCAAACTTGAATACTAAAATAGTGATTCAAATGTAAAAATT 1672
|| | |||| | || | |||||||||||||| | ||| |||||||| ||||||||||||
Sbjct 1616 ATTA-TATTATATTA-T-ATCAAACTTGAATATTTAAAGAGTGATTCCAATGTAAAAATT 1672
Query 1673 TTGTGGACACTATATTAAATGAAACATTTCCAAT 1706
| |||||||||||||||||||||| ||||| |||
Sbjct 1673 T-GTGGACACTATATTAAATGAAAAATTTCGAAT 1705
> Ahg935380 jgi|Araly1|935380|scaffold_403368.1
Length=1566
Score = 1707 bits (924), Expect = 0.0
Identities = 1338/1539 (87%), Gaps = 23/1539 (1%)
Strand=Plus/Plus
Query 19 TCTTTGCTAGT-GTTTATTATTGTCTTGGCTTCTAATGAAGTTATAGCCAAGAAAC-ACT 76
||||||||||| | | | ||||||||||| || || |||||| | ||||| ||| |||
Sbjct 40 TCTTTGCTAGTAG-TGCTCATTGTCTTGGCCTCCAACGAAGTTCTTGCCAA-CAACAACT 97
Query 77 CTTCAACACCTAAATTAAGAAGAAGTGATTTTCCAAAAGATTTTATTTTTGGAG-CTGCA 135
||||||||||||||||| |||||||||||||||| ||||||| |||||||| | |||||
Sbjct 98 CTTCAACACCTAAATTACGAAGAAGTGATTTTCCTGAAGATTTCATTTTTGG-GTCTGCA 156
Query 136 ACGTCAGCTTACCAAGTCGAAGGAGCTGCTCATGAAGATGGTAGAGGTCCAAGTATTTGG 195
|| || |||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 157 ACCTCTGCTTACCAGGTCGAAGGAGCTGCTCATGAAGATGGTAGAGGACCAAGTATCTGG 216
Query 196 GATACATTCTCTGAAAAATATCCGGAGAAGATAAAAGATGGTACCAATGGATCTATTGCA 255
||||| |||||||| ||||| || ||||||||||| ||||||| |||||| ||| ||||
Sbjct 217 GATACCTTCTCTGAGAAATACCCAGAGAAGATAAAGGATGGTAGCAATGGGTCTGTTGC- 275
Query 256 AG-TGATTCTTACCATCTTTACAAGGAAGATGTGGGTTTACTACATCAAATTGGTTTCGG 314
|| | | |||||||||||||||||||||||||||| ||| | ||||||||||| |||
Sbjct 276 AGATAACTCTTACCATCTTTACAAGGAAGATGTGGCTTTGTTGCATCAAATTGGATTCAA 335
Query 315 TGCCTATAGATTCTCTATCTCGTGGTCGAGGATCTTGCCACGTGGGAATCTAAAAGGAGG 374
||| || |||||||| ||||| ||||||||||||||||| ||||||||||||| ||||||
Sbjct 336 TGCATACAGATTCTCAATCTCATGGTCGAGGATCTTGCCTCGTGGGAATCTAAGAGGAGG 395
Query 375 TATCAACCAAGCTGGTATTGACTATTACAACAACTTGATCAATGAGCTTTTGTCTAAAGG 434
|||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 396 AATCAACCAGGCTGGTATTGACTATTACAACAACTTGATCAATGCGCTTTTGTCCAAAGG 455
Query 435 AATTAAGCCATTCGCCACCATTTTTCATTGGGACACACCGCAAAGCC-TTGAAGATGCTT 493
||||||||| || || ||||| || |||||||||||||| ||| ||| ||||||||||||
Sbjct 456 AATTAAGCCTTTTGCAACCATGTTCCATTGGGACACACCACAA-GCCCTTGAAGATGCTT 514
Query 494 ACGGAGGATTCTTTGGCGCGGAGATTGTGAATGACTTCCGCGATTATGCGGATATTTGCT 553
| || |||||| ||| || ||||||||||| || ||||| |||||||||||||||||||
Sbjct 515 ATGGCGGATTCCGTGGTGCCGAGATTGTGAACGATTTCCGGGATTATGCGGATATTTGCT 574
Query 554 TCAAGAATTTTGGAGATCGAGTGAAGCATTGGATGACATTGAACGAACCATTAACAGTTG 613
|||||| |||||||||| |||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 575 TCAAGAGTTTTGGAGATAGAGTGAAGCATTGGATGACATTGAACGAGCCATTGACAGTGG 634
Query 614 TGCAACAAGGATATGTTGCTGGTGTAATGGCTCCTGGAAGGTGTTCAAAATTCACAAACC 673
||||||||||||||||||| ||||| |||||||| ||||| || || |||||||||||||
Sbjct 635 TGCAACAAGGATATGTTGCAGGTGTTATGGCTCCAGGAAGATGCTCCAAATTCACAAACC 694
Query 674 CTAATTGCACCGCG-GGAAATGGAGCTACCGAGCCTTATATTGTTGGTCACAACCTCATT 732
|||||||||||| | ||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 695 CTAATTGCACCG-GTGGAAATGGAGCCACTGAGCCTTATATTGTTGGTCACAATCTCATC 753
Query 733 CTTGCTCATGGAGAAGCAGTCAAAGTATATAGAGAAAAATATAAGGCATCTCAAAAAGGT 792
|||||||| |||| || ||| |||| || ||||||||||| ||||| |||||||| |||
Sbjct 754 CTTGCTCACGGAGCCGCCGTCCAAGTCTACAGAGAAAAATACAAGGCTTCTCAAAATGGT 813
Query 793 CAAGTTGGTATCGCTTTGAACGCGGGTTGGAACTTGCCTTATACCGAATCAGCTGAAGAT 852
||||||||||| |||||||||||||||||||||||||| ||||| |||||| | || |||
Sbjct 814 CAAGTTGGTATTGCTTTGAACGCGGGTTGGAACTTGCCATATACAGAATCACCAGAGGAT 873
Query 853 AGATTAGCTGCGGCACGAGCCATGGCCTTCACATTCGACTA-TTTCATGGAGCCGCTTGT 911
|||||||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||||
Sbjct 874 AGATTAGCTGCGGCACGAGCCATGGCTTTCACATTTGACTACTTT-ATGGAGCCGCTTGT 932
Query 912 AACCGGTAAATATCCGGTTGACATGGTCAACAACGTAAAAGACGGTCGCTTACCTACATT 971
||||||||||| |||||||| ||||||||||| ||||||| ||| |||||||||| |||
Sbjct 933 GACCGGTAAATACCCGGTTGATATGGTCAACAATGTAAAAGGCGGCCGCTTACCTATATT 992
Query 972 TACTGCAAAACAATCTAAGATGTTGAAAGGATCATATGATTTCATTGGCATCAATTATTA 1031
|||||| |||||||||||||| | ||||| ||||||||||||||||||||||| |||||
Sbjct 993 CACTGCACAACAATCTAAGATGCTAAAAGGCTCATATGATTTCATTGGCATCAACTATTA 1052
Query 1032 CTCATCTTCTTACGCTAAGGATGTTCCTTGCTCAAGCGAAA-ACGTTAC-ATTATTCTCT 1089
||| || |||| || ||||||||||| ||||| | | ||| | ||||| || ||||||
Sbjct 1053 CTCCTCCACTTATGCAAAGGATGTTCCCTGCTCCACC-AAAGATGTTACTATG-TTCTCT 1110
Query 1090 GATCCTTGTGCTAGCGTCACAGGTGAAAGAGAAGGAGTGCCTATCGGTCCAAAGGCAGCA 1149
|||||||||||||| ||||||||||||||||| ||||| || |||||||||||||| |||
Sbjct 1111 GATCCTTGTGCTAGTGTCACAGGTGAAAGAGACGGAGTTCCGATCGGTCCAAAGGCTGCA 1170
Query 1150 TCAGATTGGCTTTTGATATATCCAAAAGGAATTCGTGATCTCCTTCTCTATGCAAAATAC 1209
|||||||||||||| ||||||||||| |||||||||||||| | |||||||||||||||
Sbjct 1171 TCAGATTGGCTTTTAATATATCCAAAGGGAATTCGTGATCTTGTCCTCTATGCAAAATAC 1230
Query 1210 AAGTTCAAGGATCCTGTCATGTATATAACAGAGAATGGTAGAGATGAAGCTAGTACCGGT 1269
||||||||||| ||||||||||| ||||| || || || ||||||||| ||||||| |
Sbjct 1231 AAGTTCAAGGACCCTGTCATGTACATAACCGAAAACGGGAGAGATGAATTTAGTACCAAT 1290
Query 1270 AAAATCGACCTTAAAGATAGTGAGAGGATCGATTACTACGCTCAACATTT-GAAGATGGT 1328
|||||| |||| ||||| |||| |||||||||||||| |||| |||| | ||| |||||
Sbjct 1291 AAAATCTTCCTTCAAGATGGTGACAGGATCGATTACTATGCTCGACATCTCGAA-ATGGT 1349
Query 1329 TCAAGACGCTATATCAATTGGAGCCAATGTTAAAGGATTCTTT-GCGTGGTCTTTGCTAG 1387
|||||||||||| || |||||||||| || || ||||| ||| || ||||| |||||||
Sbjct 1350 TCAAGACGCTATCTCGGTTGGAGCCAACGTGAAGGGATT-TTTCGCATGGTCGTTGCTAG 1408
Query 1388 ATAATTTTGAATGGGCAACGGGCTACTCAGTCCGATTTGGACTAGTTTACGTGGATTTCA 1447
| ||||| |||||||||| ||| ||| | ||||| ||||| || ||||||||||||||||
Sbjct 1409 ACAATTTCGAATGGGCAATGGGATACACGGTCCGGTTTGGGCTGGTTTACGTGGATTTCA 1468
Query 1448 ACGATGGACGTAAGAGATATCCAAAGAAATCGGCAAAATGGTTCAGAAAGTTATTGAGCG 1507
| |||||| ||||||||||||| |||||||| || | ||||||| ||| ||||||| |
Sbjct 1469 AAGATGGATGTAAGAGATATCCCAAGAAATCTGCTGAGTGGTTCAAAAAATTATTGAATG 1528
Query 1508 AAAAGAAAAGGAATTGATGAAACATGCATCATTACATTA 1546
||||||||| ||||||||| | ||| || ||| |||||
Sbjct 1529 AAAAGAAAAACAATTGATGAGATATGTAT-ATTTCATTA 1566
> Ahg486479 jgi|Araly1|486479|fgenesh2_kg.5__2471__AT3G60130.1
Length=1682
Score = 850 bits (460), Expect = 0.0
Identities = 1146/1473 (78%), Gaps = 64/1473 (4%)
Strand=Plus/Plus
Query 64 GCCAAGAAACACTCTTCAACACCTAAATTAAGAAGAAGTGATTTTCCAAAAGATTTTATT 123
|||||||| || || |||| |||| ||| ||||||| ||| |||||| ||||||| |||
Sbjct 135 GCCAAGAAGCATTCCTCAAGGCCTAGATTGAGAAGAAATGACTTTCCAGAAGATTTCATT 194
Query 124 TTTGGAGCTGCAACGTCAGCTTACCAAGT-CGAAGGAGCTGCTCATGAAGATGGTAGAGG 182
|||||| ||||||| || ||||| | ||| ||||| |||||||||||||||||||||||
Sbjct 195 TTTGGATCTGCAACTTCTGCTTATC-AGTGTGAAGGTGCTGCTCATGAAGATGGTAGAGG 253
Query 183 TCCAAGTATTTGGGA-TACATTCTCTGAAAAATATCCG-GAGAAGATAAAAGATGGTACC 240
||||||||| ||||| | | ||||||||||| | ||| || ||||||| |||||||
Sbjct 254 TCCAAGTATCTGGGACT-CTTTCTCTGAAAATT-TCCCAGAAAAGATAATGGATGGTAGT 311
Query 241 AATGGATCTATTGCA-AGTGATTCTTACCATCTTTACAAGGAAGATGTGGGTTTACTACA 299
||||| || |||||| | |||||||||| | |||||||||||||||||| ||| || ||
Sbjct 312 AATGGGTCCATTGCAGA-TGATTCTTACAACCTTTACAAGGAAGATGTGAATTTGCTGCA 370
Query 300 TCAAATTGG-TTTCGGTGCCTATAGATTCTCTATCTCGTGGTCGAGGATCTTGCCACGTG 358
||||||||| ||| | ||| || ||||||| ||||| ||||| |||| ||||| ||||
Sbjct 371 TCAAATTGGCTTT-GATGCTTACCGATTCTCGATCTCATGGTCCCGGATTTTGCCTCGTG 429
Query 359 GGAATCTAAAAGGAGGTATCAACCAAGCTGGTATTGACTATTACAACAACTTGATCAATG 418
||| | |||| ||||| |||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 430 GGACTATAAAGGGAGGAATCAACCAGGCTGGAATTGACTATTACAACAACTTGATTAATC 489
Query 419 AGCTTTTGTCTAAAGGAATTAAGCCATTCGCCACCATT-TTTCATTGGGACACACCGCAA 477
| ||| ||||||||||| | |||||||| | ||| | | ||||| |||||| ||| |
Sbjct 490 AACTTCTGTCTAAAGGAGTGAAGCCATTTGTCAC-ACTCTTTCACTGGGACTTACC--AG 546
Query 478 AG-C-CTTGAAGATGCTTACGGAGGATTCTTTGGCGCGGAGATTGTGAATGACTTCCGCG 535
|| | || |||||||||||||| || ||| |||| | || ||||||||||| ||||| |
Sbjct 547 AGGCACTCGAAGATGCTTACGGTGGCTTCCTTGGAGATGAAATTGTGAATGATTTCCGAG 606
Query 536 ATTATGCGGATA-TTTGCTTCAAGAATTTTGGAGATCGAGTGAAGCATTGGATGACATTG 594
| ||||| || | |||| ||| |||| ||||||||| |||||||||| |||| ||| |
Sbjct 607 ACTATGCAGA-ACTTTGTTTCCAGAAGTTTGGAGATAGAGTGAAGCAGTGGACAACACTA 665
Query 595 AACGAACCATTAACAGTTGTGCAACAAGGATATGTTGCTGGTGTAATGGCTCCTGGAAGG 654
||||| ||||| ||||| || || |||| ||| | | ||| || ||| ||||||||
Sbjct 666 AACGAGCCATTTACAGTAGTACATGAAGGTTATATAACAGGTCAAAAGGCACCTGGAAGA 725
Query 655 TGTTCAAAATTCACAAACCCTAATTGCACCGCG-GGAAATGGAGCTACCGAGCCTTATAT 713
||||| || ||||| || ||| ||||| | | || ||| ||| ||||||||||| ||
Sbjct 726 TGTTCCAATTTCACTAATCCTGATTGCTTAG-GTGGCGATGCAGCCACCGAGCCTTACAT 784
Query 714 TGTTGGTCACAACCTCATTCTTGCTCATGGAGAAGCAGTCAAAGTATATAGAGAAAAATA 773
|| || || |||||| | ||||||||||||| || |||||||| || |||||||| ||
Sbjct 785 CGTCGGCCATAACCTCCTCCTTGCTCATGGAGTTGCCGTCAAAGTCTACAGAGAAAAGTA 844
Query 774 TAAGGCATCTCAAAAAGGTCAAGTTGGTATCGCTTTGAACGCGGGT-TGGAACTTGCCTT 832
||||| ||||||| ||| || |||||||||| || ||| | | | ||| ||| ||||
Sbjct 845 CCAGGCAACTCAAAATGGTGAAATTGGTATCGCCTTAAACACAG-TATGGCACTACCCTT 903
Query 833 ATACCGAATCAGCTGAAGATAGATTAGCTGCGGCACGAGCCATGGCCTTCACATTCGACT 892
|| | || ||| || || | |||||||| || ||||||| ||||||||| || ||||
Sbjct 904 ATTCAGAGTCATATGCTGACCGGTTAGCTGCTGCTCGAGCCACGGCCTTCACCTTTGACT 963
Query 893 ATTTCATGGAGCCGCTTGTA-ACCGGTAAATATCCGGTTGACATGGTCAACAACGTAAAA 951
| ||||||||||| | || || |||| |||||| |||| ||||||| | |||||||
Sbjct 964 ACTTCATGGAGCCAATCGTCTAC-GGTAGATATCCAATTGAAATGGTCAGCCACGTAAAG 1022
Query 952 GACGGTCG-CTTACCTACATTTACTGCAA-AACAATCT-AAGATGTTGAAAGGATCATAT 1008
|| ||||| ||| |||||||| || || | || | || || ||| | |||||||||||
Sbjct 1023 GATGGTCGTCTT-CCTACATTCAC-GCCAGAAGAGTCCGAA-ATGCTCAAAGGATCATAC 1079
Query 1009 GATTTCATTGGCATCAATTATTACTCATCTTCTTACGCTAAGGATGTTCCTTGCTCAAGC 1068
|||||||| || || || ||||||||||||| ||| || || || | ||| ||| ||| |
Sbjct 1080 GATTTCATAGGTATAAACTATTACTCATCTTTTTATGCAAAAGACGCTCCGTGCGCAA-C 1138
Query 1069 -GAAAACGTTAC-ATTATTCTCTGATCCTTGTG-CTAGCGTCACAGGTGAAAGAGAA-GG 1124
|||||| | || || | | | ||| | || | | ||| || |||||| || || ||
Sbjct 1139 TGAAAACATCACCATG-TCCACCGATTCGTGCGTC-AGCATCGTAGGTGAGCGA-AATGG 1195
Query 1125 AGTGCCTATCGGTCCAAAGGCAGCATCAGATTGGCTTTTGATATATCCAAAAGGAATTCG 1184
||||||||||||||||| ||| | ||| |||||||||||||| ||||| || || |||||
Sbjct 1196 AGTGCCTATCGGTCCAACGGCTGGATCGGATTGGCTTTTGATTTATCCCAAGGGTATTCG 1255
Query 1185 TGATCTCCT-TCT-CTATGCAAAATACAAGTT-CAAGGATCCTGTCATGTATATAACAGA 1241
||||||||| | | | ||||||||| || | | ||| ||||||||| |||| ||||||||
Sbjct 1256 TGATCTCCTAT-TAC-ATGCAAAATTCA-GATACAATGATCCTGTCTTGTACATAACAGA 1312
Query 1242 GAATGGTAGAG-ATGAAGCTAGTACCGGTAAAATCGACCTTAAAGAT-AGT-GAGAGGAT 1298
||||| || | ||||||| | || || ||||| ||||| || | | |||| ||
Sbjct 1313 AAATGG-AGTGGATGAAGCAAATATTGGCAAAATATTTCTTAACGACGATTTGAGA--AT 1369
Query 1299 CGATTACTACGCTCAACAT-TTGAAGATGGTTCAA-GACGCTATATCAATTGGAGCCAAT 1356
|||||||| ||||| || || ||||||||| | || ||||| || || || | ||
Sbjct 1370 TGATTACTATGCTCATCACCTT-AAGATGGTT-AGCGATGCTATCTCGATCGGGGTGAAA 1427
Query 1357 GTTAAAGGATTCTTT-GCGTGGTCTTTGCTAGATAATTTTGAATGGGC--AACGGGCTAC 1413
|| || |||| ||| |||||||| ||| | |||||||| |||||| | || || |||
Sbjct 1428 GTGAAGGGATA-TTTCGCGTGGTCATTGATGGATAATTTCGAATGGTCGGAA-GGA-TAC 1484
Query 1414 TCAGTCCGATTTGGACTAGT-TTACGTGGA-TTTCAACGATGGACGTAAGAGATATCCAA 1471
| ||||| || |||||||| || ||||| ||| || |||||||||||||| |||| |
Sbjct 1485 ACGGTCCGGTTCGGACTAGTGTTT-GTGGACTTTGAA-GATGGACGTAAGAGGTATCTGA 1542
Query 1472 AGAAATCGGCAAAATGGTTCAGAAAGTTATTGA 1504
||||||| || || ||||| || ||||||||||
Sbjct 1543 AGAAATCAGCGAAGTGGTTTAGGAAGTTATTGA 1575
> Ahg481414 jgi|Araly1|481414|fgenesh2_kg.4__474__AT2G25630.1
Length=1356
Score = 490 bits (265), Expect = 1e-137
Identities = 325/354 (92%), Gaps = 4/354 (1%)
Strand=Plus/Plus
Query 441 GCCATTCGCCACCATTTTTCATTGGGACACACCGCAAAG-CCTTGAAGATGCTTACGGAG 499
||| |||||||||||||| |||||||||||||| | ||| ||||||||||||||||||||
Sbjct 351 GCCTTTCGCCACCATTTTCCATTGGGACACACCAC-AAGACCTTGAAGATGCTTACGGAG 409
Query 500 GATTCTTTGGCGCGGAGATTGTGAATGACTTCCGCGATTATGCGGATATTTGCTTCAAGA 559
||||| ||| || || ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 410 GATTCCGTGGGGCTGAAATTGTGAATGATTTCCGCGATTATGCGGATATTTGTTTCAAGA 469
Query 560 ATTTTGGAGATCGAGTGAAGCATTGGATGACATTGAACGAACCATTAACAGTTGTGCAAC 619
||||||| ||||||||||| ||||||||||||||||||||||||||||| || |||||||
Sbjct 470 ATTTTGGCGATCGAGTGAAACATTGGATGACATTGAACGAACCATTAACTGTGGTGCAAC 529
Query 620 AAGGATATGTTGCTGGTGTAATGGCTCCTGGAAGGTGTTCAAAATTCACAAACCCTAATT 679
||||||||||||||||||| |||||||| | ||||||||||||||| |||||||||||||
Sbjct 530 AAGGATATGTTGCTGGTGTTATGGCTCCAGAAAGGTGTTCAAAATTTACAAACCCTAATT 589
Query 680 GCACCGCGGGAAATGGAGCTACCGAGCCTTATATTGTTGGTCACAACCTCATTCTTGCTC 739
||||| | ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 590 GCACCTCCGGAAATGGAGCCACCGAGCCTTATATCGTTGGTCACAACCTCATTCTTGCTC 649
Query 740 ATGGAGAAGCAGTCAAAGTATATAGAGAAAAATATAAGGC-ATCTCAAAAAGGT 792
| ||||||||||||||||| |||||| ||||||||||||| | |||||||||||
Sbjct 650 ACGGAGAAGCAGTCAAAGTCTATAGAAAAAAATATAAGGCTA-CTCAAAAAGGT 702
Score = 457 bits (247), Expect = 1e-127
Identities = 315/349 (90%), Gaps = 0/349 (0%)
Strand=Plus/Plus
Query 1176 AGGAATTCGTGATCTCCTTCTCTATGCAAAATACAAGTTCAAGGATCCTGTCATGTATAT 1235
||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1008 AGGAATTCGTGATCTTATCCTCTATGCAAAATACAAGTTCAAGGATCCTGTCATGTACAT 1067
Query 1236 AACAGAGAATGGTAGAGATGAAGCTAGTACCGGTAAAATCGACCTTAAAGATAGTGAGAG 1295
||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 AACCGAGAACGGGAGAGATGAAGCTAGTACCGGTAAAATCGACCTTAAAGATAGTGAGAG 1127
Query 1296 GATCGATTACTACGCTCAACATTTGAAGATGGTTCAAGACGCTATATCAATTGGAGCCAA 1355
||||||||||||||||| |||| | |||||||||||||||||||| || |||||||||||
Sbjct 1128 GATCGATTACTACGCTCGACATCTCAAGATGGTTCAAGACGCTATCTCGATTGGAGCCAA 1187
Query 1356 TGTTAAAGGATTCTTTGCGTGGTCTTTGCTAGATAATTTTGAATGGGCAACGGGCTACTC 1415
|| |||||||| ||||| ||||||||||||||||| |||||||||||| |||| ||| |
Sbjct 1188 CGTAAAAGGATTTTTTGCATGGTCTTTGCTAGATAACTTTGAATGGGCATCGGGATACAC 1247
Query 1416 AGTCCGATTTGGACTAGTTTACGTGGATTTCAACGATGGACGTAAGAGATATCCAAAGAA 1475
|| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1248 GGTGCGATTTGGACTTGTTTACGTGGATTTCAACGATGGACGTAAGAGATATCTTAAGAA 1307
Query 1476 ATCGGCAAAATGGTTCAGAAAGTTATTGAGCGAAAAGAAAAGGAATTGA 1524
|||||| | ||||||||| | ||||||| | |||||||| |||||||
Sbjct 1308 ATCGGCTCACTGGTTCAGACATTTATTGAATGGAAAGAAAAAGAATTGA 1356
Score = 418 bits (226), Expect = 7e-116
Identities = 284/312 (91%), Gaps = 4/312 (1%)
Strand=Plus/Plus
Query 817 GGTTGGAACTTGCCTTATACCGAATCAGCTGAA-GATAGATTAGCTGCGGCACGAGCCAT 875
||||||||||| |||||||| |||||| || || ||||| ||||| ||||||||||||||
Sbjct 700 GGTTGGAACTTACCTTATACAGAATCATCT-AAGGATAGGTTAGCCGCGGCACGAGCCAT 758
Query 876 GGCCTTCACATTCGACTATTTCATGGAGCCGCTTGTAACCGGTAAATATCCGGTTGACAT 935
||| ||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||
Sbjct 759 GGCTTTCACATTCGACTATTTTATGGAGCCGCTCGTGACCGGTAAATACCCGGTTGACAT 818
Query 936 GGTCAACAACGTAAAAGACGGTCGCTTACCTACATTTACTGCAAAACAATCTAAGATG-T 994
||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
Sbjct 819 GGTTAACAACGTAAAAGGCGGTCGCTTACCTACATTTACTACAAAACAATCTAAGATGCT 878
Query 995 TGAAAGGATCATATGATTTCATTGGCATCAATTATTACTCATCTTCTTACGCTAAGGATG 1054
| || |||||||||||||||||||| || ||||||||||| |||||||| || || ||||
Sbjct 879 T-AAGGGATCATATGATTTCATTGGAATAAATTATTACTCGTCTTCTTATGCAAAAGATG 937
Query 1055 TTCCTTGCTCAAGCGAAAACGTTACATTATTCTCTGATCCTTGTGCTAGCGTCACAGGTG 1114
|||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||| |
Sbjct 938 TTCCTTGCTCAAGCGAAAACGTTACAATGTTCTCTGATCCTTGTTCTAGCGTCACAGGGG 997
Query 1115 AAAGAGAAGGAG 1126
||||||||||||
Sbjct 998 AAAGAGAAGGAG 1009
Score = 331 bits (179), Expect = 9e-90
Identities = 255/291 (88%), Gaps = 7/291 (2%)
Strand=Plus/Plus
Query 1 ATGAGAACTAAATATTTTTCTTTGCTAGTGTTTATTATTGTCTTGGCTTCTAATGAAGTT 60
|||| || ||||||||||| ||| |||||| | | |||||||||||||| |||||||||
Sbjct 1 ATGACAAATAAATATTTTTGTTTACTAGTG--T-TCATTGTCTTGGCTTCCAATGAAGTT 57
Query 61 ATAGCCAAGAAACACTCTTCAACACCTAAATTAAGAAGAA-GTGATTTTCCAAAAGATTT 119
| ||||||| |||||||||||||||||||||||||| || |||||| ||| |||||||
Sbjct 58 GTTGCCAAGAGACACTCTTCAACACCTAAATTAAGAA-AATATGATTTCCCAGAAGATTT 116
Query 120 TATTTTTGGAGCTGCAACGTCAGCTTACCAAGTCGAAGGAGCTGCTCATGAAGATGGTAG 179
||||| ||||||||||| || || ||||| |||||||||||||||||||||||||||||
Sbjct 117 CATTTTCGGAGCTGCAACCTCTGCGTACCAGGTCGAAGGAGCTGCTCATGAAGATGGTAG 176
Query 180 AGGTCCAAGTATTTGGGATACATTCTCTGAAAAATATCCGGAGAAGATAAAAGATGGTAC 239
||| || ||||| |||||||| |||||||||||||| || | ||||||||||||||||
Sbjct 177 AGGACCTAGTATATGGGATACGTTCTCTGAAAAATACCCACAAAAGATAAAAGATGGTAG 236
Query 240 CAATGGATCTATTGCAAG-TGATTCTTACCATCTTTACAAGGAAGATGTGG 289
||| ||||||||||| || ||| ||||||||||||||||||||||||||||
Sbjct 237 CAACGGATCTATTGC-AGATGACTCTTACCATCTTTACAAGGAAGATGTGG 286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65172409195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5