BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44650.1
Length=1201
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494519 jgi|Araly1|494519|fgenesh2_kg.8__335__AT5G44650.1 1777 0.0
> Ahg494519 jgi|Araly1|494519|fgenesh2_kg.8__335__AT5G44650.1
Length=1194
Score = 1777 bits (962), Expect = 0.0
Identities = 1127/1205 (94%), Gaps = 17/1205 (1%)
Strand=Plus/Plus
Query 3 AATAGTAATTTTATAGTATTATCCAAGTAGCAGTTG-TTCGGAGGCTATCTACATGTCTC 61
|||||||||||| |||||||||||| ||||||||| ||| |||||||||||||||| ||
Sbjct 1 AATAGTAATTTTCCAGTATTATCCAATTAGCAGTTGTTTC-GAGGCTATCTACATGTATC 59
Query 62 AGCCACTCGTATTATTCTCCAATCTATAAAAATTC-AAATTTTCAATCT-CCCTTTCTTA 119
|||||||||||||||||||||||||| |||||||| ||||||||||| | |||||| |||
Sbjct 60 AGCCACTCGTATTATTCTCCAATCTAGAAAAATTCAAAATTTTCAATTTCCCCTTTTTTA 119
Query 120 AGATTAAAAGTGGCAAAGTTGAGATTTTG-ATCGTCTTCTTCCTCTGGAAATTTCAATCG 178
|||||||| || |||| |||| | |||| ||||||||||||||| || |||||||||||
Sbjct 120 AGATTAAACTTGACAAA-TTGATAATTTGAATCGTCTTCTTCCTCCGGGAATTTCAATCG 178
Query 179 AAACTATATCTTCAGAGATGCAGAATCTGTGAAATTGTAGAAACGAATTTCACAtttttt 238
|||||||||| |||||||||||||||||||||| || || | |||||||| || ||||||
Sbjct 179 AAACTATATCCTCAGAGATGCAGAATCTGTGAATTTATACAGACGAATTTTAC-TTTTTT 237
Query 239 tttGAAGAAATGACGACGCAGATATTTCAGTTGCCGTTAAAGTACTGTGCTTCGAGTTTT 298
|||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 238 TTTGAAGAAATGGTGACGCAGATATTTCAGTTGCCGTTACAGTACTGTGTTTCGAGTTTT 297
Query 299 TCTTCCACCGGCCAACGGAATTACGGTGCTTCTTCTTCGCCGTCTCCGATTGTAATTTGT 358
|||||| ||||| ||||||||||||||| |||||| |||||| ||||| |||| ||||||
Sbjct 298 TCTTCCGCCGGCAAACGGAATTACGGTGTTTCTTCGTCGCCGACTCCGGTTGTTATTTGT 357
Query 359 AAGAGTAATGGAATTTCCGATGGTCTTTGGGTGAAGCGGAGGAAGAACAATCGGAGATTT 418
|||||||||||||||||||||| ||||||||| |||||||||| ||| |||| ||||||
Sbjct 358 AAGAGTAATGGAATTTCCGATGATCTTTGGGTTAAGCGGAGGAGGAAGAATCAGAGATTC 417
Query 419 GGTAGTTTAATAGTTAAGCAGGAGAAAGGAGACGTGACGGAGATTCGAGTTCCGGTTCCG 478
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GGTAGTGTGATAGTTAAGCAGGAGAAAGGAGACGTGACGGAGATTCGAGTTCCGGTTCCG 477
Query 479 TTAACTTTGGAGCAACAAGAGAAGGAGAAACAAAATCGAGATGATGAAGAAGATGAAATC 538
||||| ||||||||||||||||||||||||||||||||||||||||||| | | | | |
Sbjct 478 TTAACGTTGGAGCAACAAGAGAAGGAGAAACAAAATCGAGATGATGAAG-A-A-G--A-C 531
Query 539 GATGAAGGAGATGTAGATCCTGAAGATCTCAAATACGTCAATGAAATCAAACGGGTAATT 598
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 532 GAAGAAGGAGAAGTAGATCCTGAAGATCTCAAATACGTCAATGAAATCAAACGGGT-ATT 590
Query 599 -GAGCTTCTTAGGAGGAATAGAGATATGATCTTCAGTGAGGTTAAGTTGACTATTATGAT 657
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 591 GGAGCTTCTTAGGAGGAATAGAGATATGATCTTCAGTGAGGTTAAGTTGACAATTATGAT 650
Query 658 TGAGGATCCAAGGGAACTGGAAAGAAGGAGGCTTCTTGGAATAGAAGATGCAGATACTCC 717
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 651 TGAGGATCCAAGGGAAGTGGAAAGAAGGAGGCTGCTTGGAATAGAAGATGCAGATACTCC 710
Query 718 AAGCAGAGATGATTTGGCTGAAGC-CTTGGAACAGGTAAATGATGGGAAAATCCCTAAAG 776
||| ||||| |||||||||||||| | |||| ||||||||||||||||||||||||||||
Sbjct 711 AAGTAGAGAGGATTTGGCTGAAGCAC-TGGAGCAGGTAAATGATGGGAAAATCCCTAAAG 769
Query 777 ATCGTGCAACTCTTCGGATGCTGCATGAGGAAATGATCCGTTGGCCAAATTTAGAGGTTG 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 ATCGTGCAACTCTTCGGATGCTGCATGAGGAAATGATCCGTTGGCCAAATTTAGAGGTTG 829
Query 837 AGGTTTCAAAGAAGCAACGAGGAAAGTCAATGTACGCTAAATCCACAGACACTGGAATAG 896
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 830 AGGTTTCAAAGAAGCAACGAGGAAAATCAATGTACGCTAAATCCACAGACACCGGAATAG 889
Query 897 ATCCAAAAGAAGCAGCCAAGAGACTCAACGTCGAATGGGATTCAGCTGCTGCAATTGAAG 956
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 890 ATCCAAAAGAAGCAGCCAAGAGACTCAACATAGAATGGGATTCAGCTGCTGCAATTGAAG 949
Query 957 AAGTCGATGTCGATGATGAACAAGGAGTAGTAACCAAAGTCGCGGGCTATGGAGCGTTGT 1016
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 950 AAGCCGATGTCGATGATGAACAAGGAGTAGTAACCAAAGTCGCGGGCTATGGAGCATTGT 1009
Query 1017 ACTTCGTCTCAGCTTTACCAGTTATCATTGGTATCTCTGTTGTATTAATTTTGTTTTACA 1076
|||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1010 ACTTTGTCTCGGCTTTACCAGTTATCATCGGTATCTCTGTTGTATTAATCTTGTTTTACA 1069
Query 1077 ATTCCCTACAGTAGAGTCAAATCCATTTAGTTGTTATACACACCACCACCAATGACCCAT 1136
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1070 ATTCCCTTCAGTAGAGTCAAATCCATTTAGTTGTTATACACACCAGCACCAATGACCCAT 1129
Query 1137 CATTGATGTTTTGTAACTTAAGAACATGAAATGAGTTTTTCAATTATTTAATCATCTTCT 1196
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1130 CATTGATGTTTTGTAACTTAAGAACATGAAATGAATTTTTCAATTATTTAATCATCTTCT 1189
Query 1197 TCCTT 1201
|||||
Sbjct 1190 TCCTT 1194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44832550392
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5