BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G44660.1 Length=1407 Score E Sequences producing significant alignments: (Bits) Value Ahg494518 jgi|Araly1|494518|fgenesh2_kg.8__334__AT5G44660.1 2019 0.0 > Ahg494518 jgi|Araly1|494518|fgenesh2_kg.8__334__AT5G44660.1 Length=1356 Score = 2019 bits (1093), Expect = 0.0 Identities = 1274/1361 (94%), Gaps = 13/1361 (1%) Strand=Plus/Plus Query 40 ATGGTGGCTGCAGTACTTATGCCAACT-ATTAGTTTCAGAGACGAAAGTGCTCGCGAGGA 98 |||||||||||||| |||||||||| | | |||||||||||||||||| |||| || | Sbjct 1 ATGGTGGCTGCAGTTCTTATGCCAA-TGGTCAGTTTCAGAGACGAAAGTTCTCGTGAAAA 59 Query 99 TTGGCAAGTTCTAAGCAGAAACGATTCAAAGAAGAAGATTCTAGTCAAGCAAACGAGTAT 158 |||||||||| |||| ||||| |||| |||||||||||||| ||||||||||||||||| Sbjct 60 TTGGCAAGTTATAAGTAGAAATAATTCGAAGAAGAAGATTCTGGTCAAGCAAACGAGTAT 119 Query 159 GATGCAATCCGAGAGAGAGATATCGATGGATCCGAAATCAATCAGGTCGTTGTCTATGTC 218 | |||||||||| |||||||||||||||||||| ||||||||||||||||||||| | || Sbjct 120 GTTGCAATCCGAAAGAGAGATATCGATGGATCCAAAATCAATCAGGTCGTTGTCTTTTTC 179 Query 219 GGGTTCGTTGAGAAGGAACGATAGCTTCGATATGGTTCGTTTACCGGCAATGTCACCTCC 278 ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||| Sbjct 180 AGGTTCGTTGAGAAGGAATGATAGCTTCGATATGATTCGTTTACCGGCGATGTCACCTCC 239 Query 279 TAGAGACTTAGATTCGCCTATGCCTCTTCCTTTGCAGCCAGTGCAGA-CTACTGGTTCTC 337 ||||||||||||| |||||||| || ||||||||||||||||||||| || ||| ||||| Sbjct 240 TAGAGACTTAGATGCGCCTATGGCTATTCCTTTGCAGCCAGTGCAGACCT-CTGCTTCTC 298 Query 338 CTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAGGGAACAAGACAGCCTCCCAA 397 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 299 CTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAAGGAACAAGACAGCCTCTCAA 358 Query 398 ACTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGTTCAGAAACAAGGACCAAGACAGCC 457 ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct 359 ACTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAAGGAACAAGACAGCC 418 Query 458 TTC-CAAACTCAACCACTGGTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCCCTCAGA 516 || ||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| Sbjct 419 -TCTCAAACTCAACCTCTGCTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGA 477 Query 517 AACAAGGAACAAGACAGCCTCCCAAACTCAACCACTGGTTCTCCAAAACAACGTTCAGGT 576 ||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||| Sbjct 478 AACAAGGAACAAGACAGCCTCCCAAACTCAACCTCTGCTTCTCCTAAACAACGTTCAGGT 537 Query 577 CTCATGCGGGCCCTCAGAAACAAGGAACAAGACTCGTCTTCGGCGTCGTACAAGAGAAGC 636 ||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 538 CTCATGCGGGCGCTCAGAAACAAGGAACAAGACTCGTCTGCGGCGTCATACAAGAGAAGC 597 Query 637 AAATCTTGTGGGTCTACTAGCAAGACACTCTCTCATAAGAGCAGCGGAATCAGAAACTCT 696 |||||||||||||||||||| |||| ||| |||| ||||||||||||||||||||||||| Sbjct 598 AAATCTTGTGGGTCTACTAGTAAGAGACTATCTCTTAAGAGCAGCGGAATCAGAAACTCT 657 Query 697 TTCTTCATTAAAACCGATTCGAACAAGAGCATCAGCAATAATAGTACATTAGAAGACAGA 756 ||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||| Sbjct 658 TTCTTCATTAAAACCGAATCTAACAAGAGCATCAGCAATAATAATACATTAGAAGACAGA 717 Query 757 TTCAAATGCAACGCTCTGTGTTTATTCCTCCCCGGTTTCAGTAAAGGAAAACCGATCAGA 816 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 718 TTCAAATGCAACGCTCTGTGTTTATTCCTCCCCGGTTTCAGTAAAGAAAAACCGATCAGA 777 Query 817 TCATCACAGAAAGACGATTCTTCTTCCTTCACCCGAACCACCACGATGACGAGATCATCA 876 ||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 778 TCATCACGGAAAGATGATTCTTCCTCCTTCACCCGAACCACCACGATGACGAGATCATCA 837 Query 877 TCCTCTACCATTACCGTTTCAAGAACAGTCTCCGTCAGAGAATCCACCACCACTACCACA 936 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 TCATCGACCATTACCGTTTCAAGAACAGTCTCCGTCAGAGAATCCACCACCACTACCACA 897 Query 937 GTGATCTCCGCTCGAGCTTCAATGGAGAAATTCGATTGCGGCTCATATACTTCGGAATCC 996 |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| || Sbjct 898 GTGATCTCAGCTCGGGCTTCAATGGAGAAATTCGATTGCGGCTCATACACTTCGGAAGCC 957 Query 997 -TGCGGAGAGGAAGGAGGAAATCACTTCTTTGACTTACCGTCCGAGCTAATCAAAAGTGG 1055 | |||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 958 GT-CGGAGAAGAAGGAGGAAATCACTTCTTTGACTTACCATCCGAGCTAATCAAAAGCGG 1016 Query 1056 TTCAGGTGATAACGACCATGACGAACCGGTTTCAGCGGCTTTCGTGTTCGACAAGGAACC 1115 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1017 TTCAGGTGATAACGACCATGATGAACCGGTTTCAGCGGCTTTCGTGTTCGACAAGGAACC 1076 Query 1116 TGTTGAGAAAGAGATCAAAGGTGTTTTAAAGGTTTCTGGTTCGAAAAACAGAAAAGCAAT 1175 ||||||||||||||||||||| |||||||||||||||||||||| |||||||||| | || Sbjct 1077 TGTTGAGAAAGAGATCAAAGGGGTTTTAAAGGTTTCTGGTTCGAGAAACAGAAAATCGAT 1136 Query 1176 GGAGTCTCCTTCACTGCGTCAGGTTCGATTCTCCACATCATCGCCGGTTTCATACCCGAC 1235 |||||| |||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 1137 TGAGTCTTCTTCACTGCGTCAGGTTCGATTCTCCACGTCATCGCCGGTTTCATACCCAAC 1196 Query 1236 GTCTCCGGCGATCTCTCCACGGTTATTAGAAGCCACCAAGAATTTTAATGCTTTCTTGGA 1295 ||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 1197 GTCTCCGGCAATCTCTCCACGGTTGTTAGAAGCCACCAAGAATTTCAATGCTTTCTTGGA 1256 Query 1296 AGCTCAAGCCGTTTAAATGATG--G-A-CTCTTAACTACAATATAAAATATAAGCTGTAA 1351 |||||||||||||||||||||| | | | |||||||||||||||||||||||||| ||| Sbjct 1257 AGCTCAAGCCGTTTAAATGATGATGGAGC-CTTAACTACAATATAAAATATAAGCTATAA 1315 Query 1352 TATACCAAAGTCTTGCTAAATATTTTTCTTTGGGAAATTAA 1392 ||| ||||||||||| ||||||||||||||||||||||||| Sbjct 1316 TATCCCAAAGTCTTGTTAAATATTTTTCTTTGGGAAATTAA 1356 Score = 267 bits (144), Expect = 2e-70 Identities = 190/210 (90%), Gaps = 12/210 (6%) Strand=Plus/Plus Query 400 TCTCCTAAACAACGTTCAGGTCTCATGCGGGCGTTCAGAAACAAGGACCAAGACAGCCTT 459 ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| | Sbjct 295 TCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAAGGAACAAGACAGCC-T 353 Query 460 CCAAACTCAACCACTGGTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCCCTCAGAAAC 519 ||||| || |||||||||||||||||||||||||||||||| ||||||||| Sbjct 354 -----CTCAA--AC----TCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAAC 402 Query 520 AAGGAACAAGACAGCCTCCCAAACTCAACCACTGGTTCTCCAAAACAACGTTCAGGTCTC 579 |||||||||||||||||| ||||||||||| ||| |||||| |||||||||||||||||| Sbjct 403 AAGGAACAAGACAGCCTCTCAAACTCAACCTCTGCTTCTCCTAAACAACGTTCAGGTCTC 462 Query 580 ATGCGGGCCCTCAGAAACAAGGAACAAGAC 609 |||||||| ||||||||||||||||||||| Sbjct 463 ATGCGGGCGCTCAGAAACAAGGAACAAGAC 492 Score = 267 bits (144), Expect = 2e-70 Identities = 190/210 (90%), Gaps = 12/210 (6%) Strand=Plus/Plus Query 334 TCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAGGGAACAAGACAG-C-C 391 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | | Sbjct 361 TCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAAGGAACAAGACAGCCTC 420 Query 392 TC---C-CAA-----AC-TCTCCTAAACAACGTTCAGGTCTCATGCGGGCGTTCAGAAAC 441 || | ||| | ||||||||||||||||||||||||||||||||| |||||||| Sbjct 421 TCAAACTCAACCTCTGCTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAAC 480 Query 442 AAGGACCAAGACAGCCTTCCAAACTCAACCACTGGTTCTCCTAAACAACGTTCAGGTCTC 501 ||||| ||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| Sbjct 481 AAGGAACAAGACAGCCTCCCAAACTCAACCTCTGCTTCTCCTAAACAACGTTCAGGTCTC 540 Query 502 ATGCGGGCCCTCAGAAACAAGGAACAAGAC 531 |||||||| ||||||||||||||||||||| Sbjct 541 ATGCGGGCGCTCAGAAACAAGGAACAAGAC 570 Score = 156 bits (84), Expect = 5e-37 Identities = 124/141 (88%), Gaps = 12/141 (9%) Strand=Plus/Plus Query 469 ACCACTGGTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCCCTCAGAAACAAGGAACAA 528 ||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 286 ACCTCTGCTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAAGGAACAA 345 Query 529 GACAGCCTCCCAAACTCAACCACTGGTTCTCCAAAACAACGTTCAGGTCTCATGCGGGCC 588 ||||||||| |||| ||| |||| |||||||||||||||||||||||||| Sbjct 346 GACAGCCTC------TCAA--ACT----CTCCTAAACAACGTTCAGGTCTCATGCGGGCG 393 Query 589 CTCAGAAACAAGGAACAAGAC 609 ||||||||||||||||||||| Sbjct 394 CTCAGAAACAAGGAACAAGAC 414 Score = 154 bits (83), Expect = 2e-36 Identities = 121/137 (88%), Gaps = 12/137 (9%) Strand=Plus/Plus Query 329 CTGGTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAGGGAACAAGACA 388 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 434 CTGCTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAAGGAACAAGACA 493 Query 389 GCCTCCCAAACTC----TC--CT------AAACAACGTTCAGGTCTCATGCGGGCGTTCA 436 ||||||||||||| || || ||||||||||||||||||||||||||| ||| Sbjct 494 GCCTCCCAAACTCAACCTCTGCTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCA 553 Query 437 GAAACAAGGACCAAGAC 453 |||||||||| |||||| Sbjct 554 GAAACAAGGAACAAGAC 570 Score = 99.0 bits (53), Expect = 8e-20 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 329 CTGGTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAGGGAACAAGAC 387 ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 512 CTGCTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAAGGAACAAGAC 570 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52602628345 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5