BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44660.1
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494518 jgi|Araly1|494518|fgenesh2_kg.8__334__AT5G44660.1 2019 0.0
> Ahg494518 jgi|Araly1|494518|fgenesh2_kg.8__334__AT5G44660.1
Length=1356
Score = 2019 bits (1093), Expect = 0.0
Identities = 1274/1361 (94%), Gaps = 13/1361 (1%)
Strand=Plus/Plus
Query 40 ATGGTGGCTGCAGTACTTATGCCAACT-ATTAGTTTCAGAGACGAAAGTGCTCGCGAGGA 98
|||||||||||||| |||||||||| | | |||||||||||||||||| |||| || |
Sbjct 1 ATGGTGGCTGCAGTTCTTATGCCAA-TGGTCAGTTTCAGAGACGAAAGTTCTCGTGAAAA 59
Query 99 TTGGCAAGTTCTAAGCAGAAACGATTCAAAGAAGAAGATTCTAGTCAAGCAAACGAGTAT 158
|||||||||| |||| ||||| |||| |||||||||||||| |||||||||||||||||
Sbjct 60 TTGGCAAGTTATAAGTAGAAATAATTCGAAGAAGAAGATTCTGGTCAAGCAAACGAGTAT 119
Query 159 GATGCAATCCGAGAGAGAGATATCGATGGATCCGAAATCAATCAGGTCGTTGTCTATGTC 218
| |||||||||| |||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 120 GTTGCAATCCGAAAGAGAGATATCGATGGATCCAAAATCAATCAGGTCGTTGTCTTTTTC 179
Query 219 GGGTTCGTTGAGAAGGAACGATAGCTTCGATATGGTTCGTTTACCGGCAATGTCACCTCC 278
||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||
Sbjct 180 AGGTTCGTTGAGAAGGAATGATAGCTTCGATATGATTCGTTTACCGGCGATGTCACCTCC 239
Query 279 TAGAGACTTAGATTCGCCTATGCCTCTTCCTTTGCAGCCAGTGCAGA-CTACTGGTTCTC 337
||||||||||||| |||||||| || ||||||||||||||||||||| || ||| |||||
Sbjct 240 TAGAGACTTAGATGCGCCTATGGCTATTCCTTTGCAGCCAGTGCAGACCT-CTGCTTCTC 298
Query 338 CTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAGGGAACAAGACAGCCTCCCAA 397
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 299 CTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAAGGAACAAGACAGCCTCTCAA 358
Query 398 ACTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGTTCAGAAACAAGGACCAAGACAGCC 457
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 359 ACTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAAGGAACAAGACAGCC 418
Query 458 TTC-CAAACTCAACCACTGGTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCCCTCAGA 516
|| ||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 419 -TCTCAAACTCAACCTCTGCTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGA 477
Query 517 AACAAGGAACAAGACAGCCTCCCAAACTCAACCACTGGTTCTCCAAAACAACGTTCAGGT 576
||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||
Sbjct 478 AACAAGGAACAAGACAGCCTCCCAAACTCAACCTCTGCTTCTCCTAAACAACGTTCAGGT 537
Query 577 CTCATGCGGGCCCTCAGAAACAAGGAACAAGACTCGTCTTCGGCGTCGTACAAGAGAAGC 636
||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 538 CTCATGCGGGCGCTCAGAAACAAGGAACAAGACTCGTCTGCGGCGTCATACAAGAGAAGC 597
Query 637 AAATCTTGTGGGTCTACTAGCAAGACACTCTCTCATAAGAGCAGCGGAATCAGAAACTCT 696
|||||||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||
Sbjct 598 AAATCTTGTGGGTCTACTAGTAAGAGACTATCTCTTAAGAGCAGCGGAATCAGAAACTCT 657
Query 697 TTCTTCATTAAAACCGATTCGAACAAGAGCATCAGCAATAATAGTACATTAGAAGACAGA 756
||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||
Sbjct 658 TTCTTCATTAAAACCGAATCTAACAAGAGCATCAGCAATAATAATACATTAGAAGACAGA 717
Query 757 TTCAAATGCAACGCTCTGTGTTTATTCCTCCCCGGTTTCAGTAAAGGAAAACCGATCAGA 816
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 718 TTCAAATGCAACGCTCTGTGTTTATTCCTCCCCGGTTTCAGTAAAGAAAAACCGATCAGA 777
Query 817 TCATCACAGAAAGACGATTCTTCTTCCTTCACCCGAACCACCACGATGACGAGATCATCA 876
||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 778 TCATCACGGAAAGATGATTCTTCCTCCTTCACCCGAACCACCACGATGACGAGATCATCA 837
Query 877 TCCTCTACCATTACCGTTTCAAGAACAGTCTCCGTCAGAGAATCCACCACCACTACCACA 936
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TCATCGACCATTACCGTTTCAAGAACAGTCTCCGTCAGAGAATCCACCACCACTACCACA 897
Query 937 GTGATCTCCGCTCGAGCTTCAATGGAGAAATTCGATTGCGGCTCATATACTTCGGAATCC 996
|||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 898 GTGATCTCAGCTCGGGCTTCAATGGAGAAATTCGATTGCGGCTCATACACTTCGGAAGCC 957
Query 997 -TGCGGAGAGGAAGGAGGAAATCACTTCTTTGACTTACCGTCCGAGCTAATCAAAAGTGG 1055
| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 958 GT-CGGAGAAGAAGGAGGAAATCACTTCTTTGACTTACCATCCGAGCTAATCAAAAGCGG 1016
Query 1056 TTCAGGTGATAACGACCATGACGAACCGGTTTCAGCGGCTTTCGTGTTCGACAAGGAACC 1115
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TTCAGGTGATAACGACCATGATGAACCGGTTTCAGCGGCTTTCGTGTTCGACAAGGAACC 1076
Query 1116 TGTTGAGAAAGAGATCAAAGGTGTTTTAAAGGTTTCTGGTTCGAAAAACAGAAAAGCAAT 1175
||||||||||||||||||||| |||||||||||||||||||||| |||||||||| | ||
Sbjct 1077 TGTTGAGAAAGAGATCAAAGGGGTTTTAAAGGTTTCTGGTTCGAGAAACAGAAAATCGAT 1136
Query 1176 GGAGTCTCCTTCACTGCGTCAGGTTCGATTCTCCACATCATCGCCGGTTTCATACCCGAC 1235
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1137 TGAGTCTTCTTCACTGCGTCAGGTTCGATTCTCCACGTCATCGCCGGTTTCATACCCAAC 1196
Query 1236 GTCTCCGGCGATCTCTCCACGGTTATTAGAAGCCACCAAGAATTTTAATGCTTTCTTGGA 1295
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1197 GTCTCCGGCAATCTCTCCACGGTTGTTAGAAGCCACCAAGAATTTCAATGCTTTCTTGGA 1256
Query 1296 AGCTCAAGCCGTTTAAATGATG--G-A-CTCTTAACTACAATATAAAATATAAGCTGTAA 1351
|||||||||||||||||||||| | | | |||||||||||||||||||||||||| |||
Sbjct 1257 AGCTCAAGCCGTTTAAATGATGATGGAGC-CTTAACTACAATATAAAATATAAGCTATAA 1315
Query 1352 TATACCAAAGTCTTGCTAAATATTTTTCTTTGGGAAATTAA 1392
||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1316 TATCCCAAAGTCTTGTTAAATATTTTTCTTTGGGAAATTAA 1356
Score = 267 bits (144), Expect = 2e-70
Identities = 190/210 (90%), Gaps = 12/210 (6%)
Strand=Plus/Plus
Query 400 TCTCCTAAACAACGTTCAGGTCTCATGCGGGCGTTCAGAAACAAGGACCAAGACAGCCTT 459
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
Sbjct 295 TCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAAGGAACAAGACAGCC-T 353
Query 460 CCAAACTCAACCACTGGTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCCCTCAGAAAC 519
||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 354 -----CTCAA--AC----TCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAAC 402
Query 520 AAGGAACAAGACAGCCTCCCAAACTCAACCACTGGTTCTCCAAAACAACGTTCAGGTCTC 579
|||||||||||||||||| ||||||||||| ||| |||||| ||||||||||||||||||
Sbjct 403 AAGGAACAAGACAGCCTCTCAAACTCAACCTCTGCTTCTCCTAAACAACGTTCAGGTCTC 462
Query 580 ATGCGGGCCCTCAGAAACAAGGAACAAGAC 609
|||||||| |||||||||||||||||||||
Sbjct 463 ATGCGGGCGCTCAGAAACAAGGAACAAGAC 492
Score = 267 bits (144), Expect = 2e-70
Identities = 190/210 (90%), Gaps = 12/210 (6%)
Strand=Plus/Plus
Query 334 TCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAGGGAACAAGACAG-C-C 391
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
Sbjct 361 TCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAAGGAACAAGACAGCCTC 420
Query 392 TC---C-CAA-----AC-TCTCCTAAACAACGTTCAGGTCTCATGCGGGCGTTCAGAAAC 441
|| | ||| | ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 TCAAACTCAACCTCTGCTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAAC 480
Query 442 AAGGACCAAGACAGCCTTCCAAACTCAACCACTGGTTCTCCTAAACAACGTTCAGGTCTC 501
||||| ||||||||||| |||||||||||| ||| |||||||||||||||||||||||||
Sbjct 481 AAGGAACAAGACAGCCTCCCAAACTCAACCTCTGCTTCTCCTAAACAACGTTCAGGTCTC 540
Query 502 ATGCGGGCCCTCAGAAACAAGGAACAAGAC 531
|||||||| |||||||||||||||||||||
Sbjct 541 ATGCGGGCGCTCAGAAACAAGGAACAAGAC 570
Score = 156 bits (84), Expect = 5e-37
Identities = 124/141 (88%), Gaps = 12/141 (9%)
Strand=Plus/Plus
Query 469 ACCACTGGTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCCCTCAGAAACAAGGAACAA 528
||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 286 ACCTCTGCTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAAGGAACAA 345
Query 529 GACAGCCTCCCAAACTCAACCACTGGTTCTCCAAAACAACGTTCAGGTCTCATGCGGGCC 588
||||||||| |||| ||| |||| ||||||||||||||||||||||||||
Sbjct 346 GACAGCCTC------TCAA--ACT----CTCCTAAACAACGTTCAGGTCTCATGCGGGCG 393
Query 589 CTCAGAAACAAGGAACAAGAC 609
|||||||||||||||||||||
Sbjct 394 CTCAGAAACAAGGAACAAGAC 414
Score = 154 bits (83), Expect = 2e-36
Identities = 121/137 (88%), Gaps = 12/137 (9%)
Strand=Plus/Plus
Query 329 CTGGTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAGGGAACAAGACA 388
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 434 CTGCTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAAGGAACAAGACA 493
Query 389 GCCTCCCAAACTC----TC--CT------AAACAACGTTCAGGTCTCATGCGGGCGTTCA 436
||||||||||||| || || ||||||||||||||||||||||||||| |||
Sbjct 494 GCCTCCCAAACTCAACCTCTGCTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCA 553
Query 437 GAAACAAGGACCAAGAC 453
|||||||||| ||||||
Sbjct 554 GAAACAAGGAACAAGAC 570
Score = 99.0 bits (53), Expect = 8e-20
Identities = 57/59 (97%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 329 CTGGTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAGGGAACAAGAC 387
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 512 CTGCTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAAGGAACAAGAC 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52602628345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5