BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44680.1
Length=1406
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948624 jgi|Araly1|948624|scaffold_800511.1 1744 0.0
Ahg478633 jgi|Araly1|478633|fgenesh2_kg.3__1334__AT3G12710.1 141 1e-32
> Ahg948624 jgi|Araly1|948624|scaffold_800511.1
Length=1105
Score = 1744 bits (944), Expect = 0.0
Identities = 1056/1109 (95%), Gaps = 11/1109 (1%)
Strand=Plus/Plus
Query 76 CAAAGCTAGACAGaaaaaaaaaaaTGTGTTCCTCAAAATTAAAAAATCTGACCCAAGAAA 135
||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1 CAAAGATAGACAG---AAAAAAAATGTGTTCCTCAAAATTAAAGAACCTGACCCAAGAAA 57
Query 136 ACATTTCTCAGATCAACGGCCGTCCGGTTCTTCAACCGAAGTCGAACCAAGTTCCGACAT 195
||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 58 ACATTTCCCAGATCAACGGTCGTCCGGTTCTTCAACCGAAATCGAACCAAGTTCCAACAT 117
Query 196 TAGACCGACGTAACTCACTaaaaaaaTCGCCTCCTAAGCCTTTGAATCCAATTG---CAT 252
||||||||||||||||||| || ||||| ||||||||||||||||||||||||| |||
Sbjct 118 TAGACCGACGTAACTCACTCAAGAAATCTCCTCCTAAGCCTTTGAATCCAATTGCATCAT 177
Query 253 CAAAGATACCCTCACCAAGACCAATTTCTCTAATCTCTCCTCCTTTGTCTCCCAACACAA 312
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 178 CAAAGATACCATCACCAAGACCAATTTCTCTAAACTCTCCTCCTTTGTCTCCCAACTCAA 237
Query 313 AATCCTTAAGAAAACCGGCCGGTTCTTGCAAGGAACTTCTTAGGTCTAGCTCT-ACAAAA 371
||||||||||| ||||| |||||||||||||||| || ||||||||||||||| | ||||
Sbjct 238 AATCCTTAAGACAACCGCCCGGTTCTTGCAAGGAGCTACTTAGGTCTAGCTCTGA-AAAA 296
Query 372 TCGAAA-CCAGTGATATCACCAGAGAACAGTGATGGTGGCTACAAAGAGGTTATGCCTAT 430
|| ||| ||||||| |||||||||||| |||||||||||||||||||| |||||| ||||
Sbjct 297 TC-AAAGCCAGTGAAATCACCAGAGAATAGTGATGGTGGCTACAAAGAAGTTATGTCTAT 355
Query 431 GGTGATTGTTCAAAAGCAGCCTGGAAGTATAGCAGCTGCCagaagagaagaggttgcaat 490
||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 356 GGTGATTGTTCAAAAACAACCTGGAAGTATAGCAGCTGCAAGAAGAGAAGAGGTTGCAAT 415
Query 491 gaaacaagaagagagaaagaagaaaaTTTCTCATTACGGTAGAATCAAATCCGTAAAATC 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 GAAACAAGAAGAGAGAAAGAAGAAAATTTCTCATTACGGTAGAATCAAATCCGTAAAATC 475
Query 551 GAATGAAAAGAACTTAAATGTTGAGCATGAGAAGAAGAAGAGATGCAGTTTCATCACTAC 610
||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 476 GAACGAAAAGAACTTAAATGTTGAGCATGAGAAGAAAAAGAGGTGCAGTTTCATCACTAC 535
Query 611 AAGTTCAGATCCAATATATGTCGCTTACCATGACAAAGAATGGGGAGTTCCAGTTCATGA 670
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 AAGTACAGATCCAATATATGTCGCTTACCATGACAAAGAATGGGGAGTTCCAGTTCATGA 595
Query 671 TGACAATCTACTATTTGAGCTTCTGGTGTTAACCGGAGCTCAGGTCGGATCAGATTGGAC 730
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 596 TGACAAGCTACTATTTGAGCTTCTGGTGTTAACCGGTGCTCAGGTCGGATCAGATTGGAC 655
Query 731 TTCGGTTTTAAAGAGAAGAAACACTTTTAGAGAGGCTTTCTCTGGTTTCGAAGCAGAGTT 790
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TTCGGTTTTAAAGAAAAGAAACACTTTTAGAGAGGCTTTCTCTGGTTTCGAAGCAGAGTT 715
Query 791 GGTCGCAGACTTCAACGAGAAGAAGATACAATCAATAGTCAACGACTATGGCATTAACCT 850
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 716 GGTCGCAGACTTCAACGAGAAGAAGATACACTCAATAGTCAACGACTATGGCATTAACCT 775
Query 851 TAGCCAAGTCCTTGCAGTTGTTGACAACGCTAAACAAATTCTCAAGGTGAAAAGAGATTT 910
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 776 TAGCCAAGTCCTTGCAATTGTTGACAACTCTAAACAAATTCTCAAGGTGAAAAGAGATTT 835
Query 911 GGGGTCATTCAACAAATACATTTGGGGGTTTATGAAACACAAACCGGTCACCACAAAATA 970
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 836 TGGGTCATTCAACAAATACATTTGGGGGTTTATGAAATACAAACCGGTCACCACAAAATA 895
Query 971 CACATCATGCCAAAAGATACCGGTTAAGACATCGAAATCGGAGACTATAAGCAAAGACAT 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 CACATCATGCCAAAAGATACCGGTTAAGACATCGAAATCGGAGACTATAAGCAAAGACAT 955
Query 1031 GGTTCGTCGTGGGTTTAGATTCGTTGGTCCGACGGTTATACATTCGTTAATGCAAGCCGC 1090
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 956 GGTTCGTCGTGGGTTTAGATTCGTTGGTCCAACGGTTCTACATTCGTTAATGCAAGCCGC 1015
Query 1091 CGGTTTAACCAACGACCACTTGATCACATGTCCGAGGCATCTCGAGTGTACGGCCATGGC 1150
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1016 CGGTTTAACCAACGACCACTTGATCACATGTCCAAGGCATCTTGAGTGTACGGCCATGGC 1075
Query 1151 GGCTTTATAGGCAAAAGGATCAT-GTTGT 1178
|||||||||||||||| ||| || |||||
Sbjct 1076 GGCTTTATAGGCAAAAAGATTATTGTTGT 1104
> Ahg478633 jgi|Araly1|478633|fgenesh2_kg.3__1334__AT3G12710.1
Length=1332
Score = 141 bits (76), Expect = 1e-32
Identities = 401/552 (73%), Gaps = 46/552 (8%)
Strand=Plus/Plus
Query 589 AGAGATGCAGTTTCATCACTACAAGTTCAGATCCAATATATGTCGCTTACCATGACAAAG 648
|||||||||| ||| |||| | | ||| ||||| || || || || |||||||| |||
Sbjct 508 AGAGATGCAGCTTCCTCACCCCCACTTCTGATCCTATTTACGTGGCCTACCATGATGAAG 567
Query 649 AATGGGGAGTTCCAGTTCATGATGACAATCTAC-TAT-TT-GAGCTTCTGGTGTTAACCG 705
|||||||||||||||||||||||||||| || | | || || || ||| ||| ||
Sbjct 568 AATGGGGAGTTCCAGTTCATGATGACAAG--ACGT-TGTTCGAACTGCTGACCCTAAGCG 624
Query 706 GAGCTCAGGTCGGATCAGATTGGACTTCGGTTTTAAAGAGAA-GAAAC-ACTTTTAGAGA 763
| || || || || || ||||||||||| || | || || | | ||| | || ||
Sbjct 625 GCGCACAAGTAGGCTCCGATTGGACTTCAACCTTGA-GAAAACGTCATGACTAT-AG-GA 681
Query 764 -GGCTTTCTCTGG--TTTCGAAGCAGA-GTTGGT-CGCAGACTTCAACGAGAA-GAAGAT 817
|||||| | ||| ||| || || || | || | | || ||| || |||||| || |||
Sbjct 682 AGGCTTT-TATGGAGTTT-GAGGCGGAAGCTGTTAC-CAAACT-CACCGAGAAAGA-GAT 736
Query 818 ACAAT-CAATA-GTCAACGACTATG-GCATTA-ACCTTAGCCAAGTCCTTGCAGTTGTTG 873
||| ||||| | || ||| || | || | | | ||| |||| | ||||| |
Sbjct 737 G-AATGCAATAAG-CATCGAATACAAG-AT-AGAGATGAGCAAAGTGAGAGGTGTTGTGG 792
Query 874 ACAACGCTAAACAA-ATTCTCAAGGTGAA-AA-GAGATTTGGGGTCATTCA-ACAAATAC 929
| || |||| | || ||| || || | || || | | |||||| ||||| | | ||||||
Sbjct 793 AGAATGCTACA-AAGATTGTCGAGATCAAGAAAGCG-TTTGGG-TCATT-AGAGAAATAC 848
Query 930 ATTTGGGGGTTTATGAAACACAAACCGGTCACCACAAAATACACATCATGCCA-A-AAGA 987
||||||| ||| |||| ||||| || || |||| || |||| | ||| | | ||||
Sbjct 849 CTTTGGGGATTTGTGAACCACAAGCCCATCTCCACGAACTACA-AG-ATGGGACACAAGA 906
Query 988 TACCGGTTAAGACATCGAAATCGGAGA-CTATAAGCAAAGACATGGTTCGTCGTGGGTTT 1046
| ||||| ||||||||||| ||||||| | ||||||||||||||||||||| | || ||
Sbjct 907 TTCCGGTCAAGACATCGAAGTCGGAGAGC-ATAAGCAAAGACATGGTTCGTAGAGGCTTC 965
Query 1047 AGATTCGTTGGTCCGACGGTTATACATTCGTTAATGCAAGCCGCCGGT-TTAACCAACGA 1105
| || || ||||| || || | || || || ||||||||||| ||| ||| | |||||
Sbjct 966 CGGTTTGTGGGTCCCACTGTGGTTCACTCATTCATGCAAGCCGCTGGTCTTA-CTAACGA 1024
Query 1106 CCACTTGATCAC 1117
|||||| |||||
Sbjct 1025 CCACTTAATCAC 1036
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52564538100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5