BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44690.1
Length=2358
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915709 jgi|Araly1|915709|Al_scaffold_0008_460 1070 0.0
> Ahg915709 jgi|Araly1|915709|Al_scaffold_0008_460
Length=1863
Score = 1070 bits (579), Expect = 0.0
Identities = 934/1092 (86%), Gaps = 77/1092 (7%)
Strand=Plus/Plus
Query 1 ATGGCTTCGAGGGATGGTAACAAGaaaaaaaaGAATCTCAAAGTTTTTGTCAGAGATCGT 60
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1 ATGGCTTCGAGGGATGGTAACAAGAAAGAAAAGAATCTCAAAGTTTTTGTTGGAGATCGT 60
Query 61 TACAACAGCTTTCGTGTTTTGCCTATCGATGATTCTGGAAGTAACGAAGATGGGAAGCGT 120
| |||||||| ||||||| | | |||||||||||||||||||| ||||| |||| ||
Sbjct 61 TTCAACAGCTGTCGTGTTATAATTGTCGATGATTCTGGAAGTAACAAAGATTGGAAAAGT 120
Query 121 AAAGAGGTTATTGAATGTTCTTCAAGATCCCCTGTTTTTGAAACAGGGGAATCTTTGCAG 180
||||||||| ||||||||| |||||||||| ||||||||||||||||||||||| |||||
Sbjct 121 AAAGAGGTTCTTGAATGTTTTTCAAGATCCTCTGTTTTTGAAACAGGGGAATCTCTGCAG 180
Query 181 ATTCCTTCTTCTTATCCACTAGAGACCAATTCCAATCCATTTTATATTCCTGGTCAACCT 240
||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||
Sbjct 181 ATTCCTTCTTCTTATCCGCTAGAGACCAATTCCAATCCATTTTATAATCCGGGTCAACCT 240
Query 241 GAGACCTCGTCAAGAAATGGTGTCAGCATGGGAGCTTCTTCTCTGGTTCAGATTTGGGAA 300
||||||||||||||||||||||| | |||||||| || |||||| ||||||||
Sbjct 241 GAGACCTCGTCAAGAAATGGTGTTATCATGGGAG--------CT-GTTCAGTTTTGGGAA 291
Query 301 GCTCGGTCGCAGCAGTCAAGTTCGAGTCTAAGTCAATCGCTACTCGATAGCAGG---A-- 355
|||||||||||||||||||| ||||||||||||||||||||| | ||||||||| |
Sbjct 292 GCTCGGTCGCAGCAGTCAAGCTCGAGTCTAAGTCAATCGCTAATTGATAGCAGGACAAGT 351
Query 356 -C--G----AGT-TCT--GA-A--TC--A----AG-TC--TCTCCGACTTTCTCAACGAC 393
| | ||| ||| || | || | || || | || || ||||||||||||
Sbjct 352 TCTGGACTAAGTCTCTCCGACATTTCGAATTCGAGTTCATTTTCTGAATTTCTCAACGAC 411
Query 394 GAGGCGAGAAAAAGCAACGAAAGCAGTGGTGAAGAAATAGATTGGTTTCCTCAATCAGAT 453
|||||||||||| |||||||| ||| ||||||||||||| | |||||
Sbjct 412 CAGGCGAGAAAAAATAACGAAAGTAGTAGTGAAGAAATAGA---------T---TCAGAC 459
Query 454 ATGAATAATGTTTCAAATTCTTATGAGAATGATGGAGAAGGAAGATGTTTTCTTGAGCTG 513
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 ATGAGTAATGTTTCAAATTCTTATGAGAATGATGGAGAAGGAAGATGTTTTCTTGAGCTT 519
Query 514 GCTAGTTGTAGTACTCCTAGGATAAGAGGACGGCAAGCAAGTGAAGATGTTTGTAAGATG 573
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 520 GCTAGTTGTAGTACCCCTAGGATAAGAGGACGGCAAGCAAATGAAGATGTTTGTAAGATG 579
Query 574 ATTTTGCGTGACCGAGAAAATGAGCTTGAATTGCTCGGTGGTCGCTACGCGGTTTCAAAG 633
|||||| || ||||| |||| ||||| |||| ||||| ||||||||||||||||||||||
Sbjct 580 ATTTTGGGTAACCGAAAAAACGAGCTAGAATGGCTCGCTGGTCGCTACGCGGTTTCAAAG 639
Query 634 TTCTCGCCTCGCGGTTGTGGGCGTCTTCAGTATATGCTTATGA-TCCGAAGTTTGGAAAG 692
|||||||||||||| ||||||||||||||||||||||||| || |||||||||| |||||
Sbjct 640 TTCTCGCCTCGCGGATGTGGGCGTCTTCAGTATATGCTTA-GAATCCGAAGTTTCGAAAG 698
Query 693 GTGCATTGTGATTCAAGAAAGATATCGGTCGAAATCAGATGTAAACCGGTTTTCACGAGG 752
|||||||| || |||||||| |||||||||||| | | || | || | | ||
Sbjct 699 GTGCATTGGGACTCAAGAAAAATATCGGTCGAA-T-A--TG-AG---GGAT---A-GAT- 745
Query 753 ATCTAGGAATAGATATATGGCTAATACTAAGAAGGGATTTCGGAGCAATTTGAATAGCGC 812
|| |||| | | ||| || | |||||||| | |||||||| |||||||||
Sbjct 746 AT--AGGAC-A-A-ATA---CTGA------GAAGGGATCTGGGAGCAATCCGAATAGCGC 791
Query 813 AGTAGAAACAAAAAATTTGTCTGGAGTAGTATATTTTAGGGTGAAGAGTGTTTTGCAAGA 872
||||||||| |||||||||||| || || ||| |||| ||||| ||| ||||||||||||
Sbjct 792 AGTAGAAACTAAAAATTTGTCTAGACTAATATCTTTTCGGGTGGAGAATGTTTTGCAAGA 851
Query 873 AACAATGGAGAAAAGTAACACAAGGGAGAATCAGGCCGCGGCTGATAAGCCGGAAATTGC 932
||||||||| ||||||||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct 852 AACAATGGATAAAAGTAACACAATGGAGAATCAGGCCGCCGCTTATAAGCCGGAAATTGC 911
Query 933 CAATAAACCCGTCTTTAATGATGCTGCAAGCAATGAGAACGGTTCAAAGAAACCTGAAAT 992
||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||
Sbjct 912 CAATAAACCCGTCTTTACTGAAGCGGCAAGCAATGAGAACGGTTCAAAGAAACCTGAAAT 971
Query 993 TGAGCGGAAAGCTACAGAAGAAGGAGAAGGGTTGAGGAAAGTTACTGTGAAGGAAGGAGA 1052
|||| ||||||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 972 TGAGAGGAAAGCTACAGAAGAAAAAGAAGGGTTGAGGAAAGCTATTGTGAAGGAAGGAGA 1031
Query 1053 AGAAACGAACAA 1064
||||||||||||
Sbjct 1032 AGAAACGAACAA 1043
Score = 872 bits (472), Expect = 0.0
Identities = 657/747 (88%), Gaps = 10/747 (1%)
Strand=Plus/Plus
Query 1231 AAATCCATGGAGATTGAGGAATATAGAAGCAACCCTCAAGAAGTGACATCAGTGGTTTGT 1290
||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1042 AAAACCATGGAGATTGAGGAATATAGAAGCAACCCTCAAGAAGGGACATCAATGGTTTGT 1101
Query 1291 TTGGATAGA-GAAAAGGATGAAGAAACTGCAAGACAAGTATTTAGAGAGAGTGGTAAAGA 1349
||||||||| |||| ||| |||||||||| ||| || ||||| |||||| | ||||||||
Sbjct 1102 TTGGATAGAAGAAA-GGAAGAAGAAACTGTAAGTCACGTATTAAGAGAGTGCGGTAAAGA 1160
Query 1350 GGAAAAATCTTCACAAAACGATGAAGAAACATCAAAAGCCGAGAAGCAACAAGCAGCGGA 1409
|| | || |||||||||||||||||| ||||||||||||||||||||| |||| | ||
Sbjct 1161 CGACATATTTTCACAAAACGATGAAGACACATCAAAAGCCGAGAAGCAAGAAGCTTCAGA 1220
Query 1410 AACATTGTTTCTAATTCTTGAATCACCAATATTTCTAAATGCTTGGGATGAAAATGAAAC 1469
| | |||| || |||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1221 ACCGTTGTGCCTGATTCTTGAATCACCAATATTTCTAAATGATTTGGATGAAAATGAAAC 1280
Query 1470 AGAAAATGAAGAAAATGAAGATTGCAATAGAGAGATTATGTATTATGATTGGATTAGTGA 1529
||| |||||||||||||||||| | || |||||| | ||||| ||||||||||||| ||
Sbjct 1281 GGAATATGAAGAAAATGAAGATTACGATGGAGAGAGTGTGTATCATGATTGGATTAGCGA 1340
Query 1530 TATCTCGCGGCCAAGAAGTTATTGGGAAGATCTCAAGAAACAACGGGTGCTCGAGGTTAT 1589
| | ||||||||| ||||||| |||||||||||||||||| |||||| ||||||||||||
Sbjct 1341 TGTTTCGCGGCCACGAAGTTACTGGGAAGATCTCAAGAAAGAACGGGAGCTCGAGGTTAT 1400
Query 1590 GAACAATATTTCCGAGAAAGGCGATATGTGGAACTTGATCAAGTGGAGGACCGTTTCTAG 1649
|||||| | ||| ||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1401 GAACAAGAATTCAGAGAAAGATGATATGTGGAACTTGATCAAGTGGAGGACTGTTTCTAG 1460
Query 1650 CTTCCTCGAAGGTGATTTTCGGGAAAAGATTGATAAAATCATGATCTCATGCGTGCAAAA 1709
|||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1461 CTTCCTCGAAGGTGGTTTTCGGGAAAAGATTGATAAAATCATGATCTCCTGTATGCAAAA 1520
Query 1710 GAGGTCAGAAATAGGAAGCAATCTTGTAGAAGAAGAAGAAG--G----TAACGAGGAGAC 1763
||||| |||| ||| |||||||||||||||||||||||||| | |||||||||||
Sbjct 1521 GAGGTTAGAAGTAGAAAGCAATCTTGTAGAAGAAGAAGAAGAAGAAGATAACGAGGAGAG 1580
Query 1764 TTTGGTTGAGTGTTCAGAAAGGTACCAAGGGAACGTAGAAGAAAATGAAACAAAAAAGTT 1823
||||||||||||||||| ||||| ||||| |||| ||||||||||||||||| | |||
Sbjct 1581 TTTGGTTGAGTGTTCAGCAAGGTGCCAAGAGAACCTAGAAGAAAATGAAACAGAGAAGGA 1640
Query 1824 AA-TCCTTGAACCAGAAACTGAAACACAGATGATATGTGATCTCAAACAACAAATCAAAC 1882
|| || | ||||||| ||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1641 AAATC-TAGAACCAGTAACTGAAACACAGATGATATGTGATCTCAGAGAACAAATCAAAC 1699
Query 1883 AGCTTCAAAGAGATATTCTTGAACTACAAAGTTTGGTAAAATCTTGTGTTGATTTCCAGA 1942
|||||||||||| || || |||||| ||| |||||| ||||||||||| ||||| || |
Sbjct 1700 TGCTTCAAAGAGAAATGCTCGAACTAAAAATTTTGGTCAAATCTTGTGTCGATTTTCAAA 1759
Query 1943 AATCCTTGGAATTCGAATCACTTTCTG 1969
||||| || ||||||||||||| ||||
Sbjct 1760 AATCCATGCAATTCGAATCACTGTCTG 1786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88826451340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5