BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44710.1
Length=674
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494514 jgi|Araly1|494514|fgenesh2_kg.8__330__AT5G44710.1 673 0.0
> Ahg494514 jgi|Araly1|494514|fgenesh2_kg.8__330__AT5G44710.1
Length=494
Score = 673 bits (364), Expect = 0.0
Identities = 476/523 (91%), Gaps = 35/523 (7%)
Strand=Plus/Plus
Query 117 TTTCAAGGAAGATGGCTAGTGGTAGCCTGAAGAGCCTTATATCTTCAGCAGTGGGTCGAG 176
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 7 TTTCAAGGAAGATGGCTAGTGGTAGCCTGAAAAGCCTTATATCTTCAGCAGTGGGTCGAG 66
Query 177 GTGTGACCGAAGCAAGAGCAAGGATTTTCGGACATATGCTTAACCCAACGGGACAGAGAT 236
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 67 GTGTGACCGAAGCAAGAGCCAGGATTTTCGGACATATGCTTAACCCAACGGGACAGAGAT 126
Query 237 CTCCTCATAAGATATTAAGGAAGAAGCTTATTGGTGATAAGGTTGCAGAATGGTATCCAT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 CTCCTCATAAGATATTAAGGAAGAAGCTTATTGGTGATAAGGTTGCAGAATGGTATCCAT 186
Query 297 ACGACATCAAGAATGAGGATCCCAATGTCTTGGCTAGAGAAGAAAAAGAGCGGATATCGA 356
|||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||
Sbjct 187 ACGACATCAAGAATGAGGATCCTAATGTCTTGGCTAGAGAGGAACAAGAGCGGATATCGA 246
Query 357 AGCTTGAGATGTTGAAACGTCGTGACAAAGGACCACCAAAGAAGGGTCATGGAAAACGTG 416
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 247 AGCTTGAGATGTTGAAGCGTCGTAACAAAGGACCACCAAAGAAGGGTCATGGAAAACGTG 306
Query 417 CTGCGAAGCGTAACAAGTAGAAGTAATAACCATAGCTACAAAAAATTCTCTGCACTCTTA 476
||||||||||||||||||||||||||||||||||||||||||||| ||| || |
Sbjct 307 CTGCGAAGCGTAACAAGTAGAAGTAATAACCATAGCTACAAAAAACTCT-TG---T---- 358
Query 477 GAGTCAAACTCTTCTGGTTGAATCAGATAGAACTTATAAGTGAAAATTTCTCCTACTTAA 536
| || | || | ||||||||||| | | || ||||||||||||||||||
Sbjct 359 G-GT-----T-----GG---A-TCAGATAGAAC--A-A-GTAAAAATTTCTCCTACTTAA 399
Query 537 AACTGAATTGGTTTCCAATGATGTTACTATGTTGAGACATAGTTGAAAGCTATTTGCTTC 596
||||| ||||||||| | |||||||||||||||||||||||||||||| | | |||||
Sbjct 400 AACTGCATTGGTTTCTAGTGATGTTACTATGTTGAGACATAGTTGAAA--T-T--GCTTC 454
Query 597 CCTTTTGACTAAAAATGTCAATGGCTTTTGTTTCTCTTCTCTT 639
||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 455 CCTTTTGACTAAA--TGTCAATGGCTTT-GTTTCTCTTCTCTT 494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24741773133
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5