BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44720.1
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
Ahg356600 jgi|Araly1|356600|fgenesh1_pg.C_scaffold_8000387 1435 0.0
> Ahg356600 jgi|Araly1|356600|fgenesh1_pg.C_scaffold_8000387
Length=927
Score = 1435 bits (777), Expect = 0.0
Identities = 877/927 (95%), Gaps = 0/927 (0%)
Strand=Plus/Plus
Query 116 ATGGAGGAAGGTCTAAAGATTCAATCTTTGGTCATTTATCCGATCAAATCTTGCCGTGGA 175
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGAGGAAGCTCTAAAGATTCAATCTTTGGTCATTTATCCGATCAAATCCTGCCGTGGA 60
Query 176 ATCTCTGTTCCTCAGGCTACCGTTACTCATACTGGTTTTCAGTGGGACCGGTATTGGTTA 235
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 ATCTCTGTTCCTCAGGCTACCGTTACTCATACTGGATTTCAGTGGGACCGGTATTGGTTA 120
Query 236 GTTGTTAACTATAAAGGAAGAGCATACACTCAAAGAGTTGAGCCAACCCTTGCTCTTGTT 295
||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 121 GTTGTGAACTATAAAGGAAGAGCATACACTCAAAGAGTTGAGCCAAAGCTTGCTCTCGTT 180
Query 296 GAATCGGAGTTGCCTAAGGAAGCCTTCTTGGAAGATTGGGAGCCAACAAATGACTCATTG 355
|| || ||||||||||||||||| |||||||||||||||||||||| ||| ||||||||
Sbjct 181 GAGTCAGAGTTGCCTAAGGAAGCTTTCTTGGAAGATTGGGAGCCAAAAAAGGACTCATTT 240
Query 356 TTGGTGATAAGAGCTCCTGGTATGAGTCCGTTAAAGATACCGTTGACTAGGCCAAGCTCG 415
|||||| ||||||||||||||||||||||||| ||||| |||||||||| |||||||||
Sbjct 241 TTGGTGGTAAGAGCTCCTGGTATGAGTCCGTTGAAGATCCCGTTGACTAAGCCAAGCTCA 300
Query 416 GTAGCAGAAGGTGTGTCGATGTGGGAATGGTCTGGCTCTGCTTTTGATGAAGGAGAAGAA 475
|| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 GTGGCTGAAGGTGTGTCCATGTGGGAATGGTCTGGCTCTGCGTTTGATGAAGGAGAAGAA 360
Query 476 GCTGCGAAATGGTTTTCAGATTATCTTGGAAAACAAAGCCGTTTGGTTCGGTTTAATAAA 535
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 GCTGCAAAATGGTTTTCAGATTATCTTGGGAAACAAAGCCGTTTGGTTCGGTTTAATAAA 420
Query 536 GATACTGAAACTAGACCTTCACCTCCTGAGTTTGCAGCGGGTTACTCTACAACATTCATG 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 421 GATACTGAAACTAGACCTTCACCTCCTGAGTTTGCAGCGGGTTACTCTACAACATTTGCG 480
Query 596 GATATGTTTCCGTTTTTGGTTGCATCTCAGGGTTCTTTAGACCATTTGAATACCCTTCTG 655
|||||||||||||||||||||||||| |||| |||| ||||||| ||||||| ||| ||
Sbjct 481 GATATGTTTCCGTTTTTGGTTGCATCGCAGGCTTCTCTAGACCAACTGAATACGCTTTTG 540
Query 656 CCAGAACCGGTGCCTATAAACCGTTTTAGACCCAACATTCTTGTTGATAATTGTGATCCT 715
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CCAGAACCAGTGCCTATAAACCGTTTTAGACCCAACATTCTTGTTGATAATTGTGATCCT 600
Query 716 TTCGGTGAAGATCTTTGGGATGAAATCAAAATAAACGATTTAGTCTTCCAAGGAGTTAGG 775
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 601 TTTGGTGAAGATCTTTGGGATGAAATCAAGATAAACGATTTAGTCTTCCAAGGAGTTAGG 660
Query 776 CTATGTAGCCGCTGCAAGGTACCAACTGTGAATCAAGAAACCGGGGTTATGGGTAAAGCA 835
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 661 CTATGTAGCCGCTGCAAGGTACCAACTGTGAATCAAGAAACCGGGGTTATGGGTGCAGCA 720
Query 836 GAACCAACTGAAACTCTGATGAAATTCAGATCAGACAATGTCTTAATGCCTGACAAGAAA 895
|| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 721 GAGCCAACTGAAACTCTGATGAAGTTCAGATCAGACAATGTCTTAATGCCAGACAAGAAA 780
Query 896 CCGCGTGGAAAGGTTTTCTTTGGCAAGGAGATGGTTTGGAATTGGAACTTAACCAACACT 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CCGCGTGGAAAGGTTTTCTTTGGCAAGGAGATGGTTTGGAATTGGAACTTAACCAACACT 840
Query 956 GAAGGCGAAGGAAAGAAAACAATCAAAGTTGGTGATACCATCTCAGTCATAAGGAAGATC 1015
|||||| || | ||||| || ||||||||||||||||||||||| ||| | |||||||||
Sbjct 841 GAAGGCAAATGCAAGAAGACTATCAAAGTTGGTGATACCATCTCTGTCCTTAGGAAGATC 900
Query 1016 CCTTCCAGAGCTGAAGCAGCTGTTTAA 1042
|||||||||||||||||||||||||||
Sbjct 901 CCTTCCAGAGCTGAAGCAGCTGTTTAA 927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47196171246
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5