BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44730.2
Length=979
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494510 jgi|Araly1|494510|fgenesh2_kg.8__326__AT5G44730.2 1419 0.0
> Ahg494510 jgi|Araly1|494510|fgenesh2_kg.8__326__AT5G44730.2
Length=917
Score = 1419 bits (768), Expect = 0.0
Identities = 874/924 (95%), Gaps = 12/924 (1%)
Strand=Plus/Plus
Query 21 AAGCAAACACAAGATAAGAAGAAACAAACAATGGCGATTTCTTTCAT-T-TAGATATTTT 78
|||||||| ||||||||| ||||||||||||||||||||||||||| | |||||||||
Sbjct 1 AAGCAAACCCAAGATAAGCCGAAACAAACAATGGCGATTTCTTTCATGTAGAGATATTTT 60
Query 79 C-CTCGATTCTTAGCTTCTGGATTTTGGTGAAAGGATTTGAAATGGCGGTGTCGCTTTTA 137
| ||||||||| ||||||||||||||| |||||| || ||||||||| ||||||||||||
Sbjct 61 CTCTCGATTCTCAGCTTCTGGATTTTGTTGAAAGAATCTGAAATGGCCGTGTCGCTTTTA 120
Query 138 TCGAAACTACGGTGTATAACAGTAGATGTTACTGGTACACTTATAGCTTACAAAGGAGAG 197
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGAAATTACGGTGTATAACAGTAGATGTTACTGGTACACTTATAGCTTACAAAGGAGAG 180
Query 198 CTTGGTGATTACTATTGTATGGCTGCTAAAGCCATTGGTTTGCCTTGTCCTGATTATAAA 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTGGTGATTACTATTGTATGGCTGCTAAAGCCATTGGTTTGCCTTGTCCTGATTATAAA 240
Query 258 CGAGTTCATGAAGGTTTTAAACTAGCTTATACAGATATGGCACAAAAGTATCCTTGTTTC 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGAGTTCATGAAGGTTTTAAACTAGCTTATACAGATATGGCACAAAAGTATCCTTGTTTC 300
Query 318 GGTTTCCATGCCAAAATGCCAAACATTGTTTGGTGGAAAACTTGTGTGAGAGATTCATTT 377
||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 301 GGTTTTCATGCGAAAATGCCGAATATTGTTTGGTGGAAAACTTGTGTGAGAGATTCATTT 360
Query 378 GTCAAGGCAGGATATGAGTATGATGAGGAGACATTTGAGAAGATATTTAGGAGAATCTAT 437
||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 361 GTCAAGGTAGGATATGAGTATGATGAGGAGACGTTTGAGAAGATATTTAGGCGAATCTAT 420
Query 438 TCGACGTTTGGTTCTGCTGCACCTTACTCTGTGTTTCAAGATTCTCAACCGTTTTTAAGA 497
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 421 TCGACGTTTGGTTCTGCTGCACCTTACTCTGTGTTTGAAGATTCTCGACCGTTTTTAAGA 480
Query 498 TGGGCACGCAGGAAAGGTCTTATAGTCGGACTTGTTAGCAATGCGGAATACCGATATCAA 557
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 481 TGGGCACGCAAGAAAGGTCTTATAGTCGGACTTGTTAGCAATGCAGAATACCGATATCGA 540
Query 558 GAAGTTATTTTACCTTCCTTCGGTTTGAGCAAGGCAGAGTGGGATTTTGGTGTATTCTCT 617
||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 541 GAAGTTATTTTACCTGCCTTAGGTTTGAACAAGGCAGAGTGGGATTTTGGTGTATTCTCT 600
Query 618 GGAATTGAAGGGATAGAGAAACCAGATCCGAGGATTTTTACGCTCGCGCT-AGAGAGAGC 676
||||||||||||||||||||||||||||||||||||| | |||||| || |||||||||
Sbjct 601 GGAATTGAAGGGATAGAGAAACCAGATCCGAGGATTTACAAGCTCGC-CTTAGAGAGAGC 659
Query 677 CGGGAATAATATTGCGCCTGAAGAGGTTTTGCATATTGGAGACAGCATGCGCAAAGATTA 736
||||||| | | |||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 660 GGGGAATA-T-T-GCGCCTGAAGAGGTTTTGCATATTGGAGACAGTATGCGTAAAGATTA 716
Query 737 TGTTCCAGCAAAGAGTATTGGGATGCATGCTTTGTTGGTTGATAGGTTTAAGACGGAAGC 796
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 717 TGCTCCGGCAAAGAGTATTGGGATGCATGCTTTGTTGGTTGATAGGTTTAAGACAGAAGC 776
Query 797 TGCTAAAGACTGGATAGAAGCTGGAGCCATTGTGCTTCCAGATTTGGTTGCTGTTCAACA 856
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 777 TGCTAAAGACTGGACAGAAGCTGGAGCTATTGTGCTTCCAGATTTGGTTGCTGTTCAACA 836
Query 857 ACTTTTGGAGTCTGATAAGTTGAAATGTT-AAAATGCAGACCTCTCTTTAAGTATGAAAT 915
||||||||||||||| ||||||||||||| |||||| |||||||||| |||||| ||||
Sbjct 837 ACTTTTGGAGTCTGACAAGTTGAAATGTTGAAAATG-AGACCTCTCT--AAGTATCAAAT 893
Query 916 CTAATGTATTGTAGTATTGCACAT 939
||||||||||||||||||||||||
Sbjct 894 CTAATGTATTGTAGTATTGCACAT 917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36369262818
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5