BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44740.2
Length=2237
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494508 jgi|Araly1|494508|fgenesh2_kg.8__324__AT5G44740.2 3107 0.0
> Ahg494508 jgi|Araly1|494508|fgenesh2_kg.8__324__AT5G44740.2
Length=2042
Score = 3107 bits (1682), Expect = 0.0
Identities = 1930/2050 (94%), Gaps = 16/2050 (1%)
Strand=Plus/Plus
Query 96 AGAAATGCCGGTAGCGAGACCGGAAG-CATCGGATGCTAGAGTTATCGCTCATGTCGACA 154
||||||||||||||||||| ||| || ||||||||||||| ||||||||||||||||| |
Sbjct 1 AGAAATGCCGGTAGCGAGAGCGG-AGACATCGGATGCTAGGGTTATCGCTCATGTCGATA 59
Query 155 TGGATTGCTTCTACGTTCAAGTGGAGCAGAGGAAGCAACCGGAGTTGCGAGGACTGCCTA 214
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 60 TGGATTGCTTCTACGTTCAAGTGGAGCAAAGGAAGCAACCGGAGTTGCGAGGACTTCCTA 119
Query 215 GTGCAGTTGTACAGTACAATGAATGGCAAGGTGGTGGTTTGATTGCTGTTAGTTACGAAG 274
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 120 CTGCTGTTGTACAGTACAATGAATGGCAAGGTGGTGGTTTGATTGCTGTTAGCTACGAAG 179
Query 275 CACGTAAATGTGGCGTAAAGCGGTCGATGAGAGGTGATGAGGCTAAAGCTGCTTGTCCTC 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CACGTAAATGTGGCGTAAAGCGGTCGATGAGAGGTGATGAGGCTAAAGCTGCTTGTCCTC 239
Query 335 AGATTCAATTGGTTCAAGTTCCTGTGGCTCGTGGTAAAGCTGACCTTAATTTATATCGCA 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGATTCAATTGGTTCAAGTTCCTGTGGCTCGTGGTAAAGCTGACCTTAATTTATATCGTG 299
Query 395 GTGCCGGTTCTGAGGTGGTTTCGATTCTAGCAAAAAGCGGAAAATGTGAGAGGGCTTCGA 454
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 300 GTGCCGGTTCTGAGGTGGTTTCGATTCTAGCAAAAAGTGGAAAATGTGAGAGGGCTTCGA 359
Query 455 TTGATGAAGTGTATCTTGACCTCACTGATGCAGCAGAAAGCATGCTTGCTGATGCACCTC 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTGATGAAGTGTATCTTGACCTCACTGATGCAGCAGAAAGCATGCTTGCTGATGCACCTC 419
Query 515 CAGAGAGTTTGGAATTGATAGATGAGGAAGTTCTTAAATCCCATATTCTTGGAATGAACA 574
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||
Sbjct 420 CAGAGAGTTTGGAATTGATAGATGAAGAAGTTCTTAAATCACATATTCTTGGAATGAGCA 479
Query 575 GAGAGGATGGAGATGATTTCAAGGAGAGTGTCCGCAATTGGATTTGTCGAGAAG-ATGCT 633
||||||||||||||||||||||||||| ||||||| ||||||| |||||| ||| |||||
Sbjct 480 GAGAGGATGGAGATGATTTCAAGGAGAATGTCCGCGATTGGATATGTCGA-AAGGATGCT 538
Query 634 GATCGACGTGATAAGTTATTAAGTTGTGGAATTATCATTGTTGCAGAACTCCGGAAACAG 693
||||| ||||| |||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 539 GATCGCCGTGAAAAGTTACTAAGTTGTGGAATTATTATTGTTGCAGAACTCCGGAAACAG 598
Query 694 GTGCTTAAGGAGACTGAGTTTACTTGTTCTGCTGGCATAGCCCATAACAAGATGCTAGCC 753
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GTGCTTAAGGAGACTGAATTTACTTGTTCTGCTGGCATAGCCCATAACAAGATGCTAGCT 658
Query 754 AAACTTGCTAGTGGAATGAACAAACCTGCGCAGCAGACAGTTGTACCATATGCAGCTGTA 813
|||||||||||||| ||||| |||||||| || || || |||||||||||| |||||||
Sbjct 659 AAACTTGCTAGTGGGATGAATAAACCTGCCCAACAAACCGTTGTACCATATTCAGCTGTG 718
Query 814 CAGGAATTACTAAGTTCCTTGCCAATAAAGAAAATGAAACAACTGGGAGGAAAGCTGGGC 873
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 719 CAGGAATTACTCAGTTCCTTGCCAATAAAGAAAATGAAACAGCTGGGAGGAAAGCTGGGC 778
Query 874 ACTAGCTTGCAAACTGA-CTTGGGAGTTGACACAGTAGGGGACTTGCTGCAATTTTCTGA 932
||||||||||||||||| || |||||||||| | || ||||||||| |||||| ||||||
Sbjct 779 ACTAGCTTGCAAACTGATCT-GGGAGTTGACTCTGTTGGGGACTTGTTGCAATATTCTGA 837
Query 933 AACGAAGCTACAAGAACATTACGGAGTAAATACTGGTACTTGGTTATGGAATATAGCAAG 992
||| ||||| ||||||||||| ||| ||||||||||||| |||||||||||||| |||||
Sbjct 838 AACAAAGCTGCAAGAACATTATGGAATAAATACTGGTACGTGGTTATGGAATATCGCAAG 897
Query 993 AGGGATCAGTGGAGAAGAAGTGCAAGGTCGCCTTCTCCCCAAAAGTCATGGTTCTGGAAA 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 898 AGGGATCAGTGGAGAAGAAGTGCAAGGTCGCCTTCTCCCCAAAAGTCATGGTTCTGGGAA 957
Query 1053 GACATTTCCCGGACCTCGTGCTTTGAAGTCACTCTCAACTGTTCAGCATTGGCTGAATCA 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GACATTTCCCGGACCTCGTGCTTTGAAGTCACTCTCAACTGTTCAGCATTGGCTGAATCA 1017
Query 1113 GCTTTCCGAGGAACTAAGCGAGCGCCTCGGTTCTGACTTGGAGCAGAATAAGCGGATTGC 1172
|||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1018 GCTTTCTGAAGAACTAAGCGAGCGCCTCAGTTCTGACTTGGAGCAGAATAAGCGGATTGC 1077
Query 1173 AAGCACCCTTACCCTTCATGCTAGCGCTTTCAGATCAAAGGATTCAGATTCTCATAAGAA 1232
|| |||||||||||||||||||| ||||||| ||||| ||||||| |||||||||||||
Sbjct 1078 TAGTACCCTTACCCTTCATGCTAGTGCTTTCAAATCAAGGGATTCAAATTCTCATAAGAA 1137
Query 1233 ATTTCCTTCAAAATCATGTCCTATGAGATATGGAGTAACCAAGATCCAAGAAGATGCCTT 1292
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1138 ATTTCCTTCAAAATCATGTCCTCTGAGATATGGAGTAACCAAGATTCAAGAAGATGCCTT 1197
Query 1293 TAA-CTTGTTCCAAGCTGCCTTACGTGAGTACATGGGATCCTT-CGGGATCAAACCTCAA 1350
||| || ||||||||||||||| ||||||||||||||| |||| ||||| |||||||| |
Sbjct 1198 TAATCT-GTTCCAAGCTGCCTTTCGTGAGTACATGGGA-CCTTTCGGGAGCAAACCTCGA 1255
Query 1351 GGAAATAAGCTAGAGACATGGAGGATAACAGGTCTTTCTGTTTCAGCGAGTAAAATTGTT 1410
|||||||||| ||||||||||||||||||||| |||||| |||| || ||||||||||||
Sbjct 1256 GGAAATAAGCAAGAGACATGGAGGATAACAGGCCTTTCTATTTCCGCAAGTAAAATTGTT 1315
Query 1411 GATATACCATCTGGAACAAGCTCGATCATGAGATATTTTCAAAGTCAACCTACTGTTCCT 1470
||||| |||||||||||||||||||| ||||||||||| || ||| || |||||||||||
Sbjct 1316 GATATTCCATCTGGAACAAGCTCGATAATGAGATATTTCCAGAGTGAATCTACTGTTCCT 1375
Query 1471 TCTCGTTCAGCAGATGGTTGTGTTCAAGGAA-ATGTAGCGATGACTGCTTCAGCTAGCGA 1529
|||||||||||||||||||||||||||| | ||||| |||| ||| |||||||||| ||
Sbjct 1376 TCTCGTTCAGCAGATGGTTGTGTTCAAG-ATCATGTAACGATAACTCCTTCAGCTAGTGA 1434
Query 1530 AGGATGTTCAGAACAGAGGTCAACAGAAACTCAAGCAGCAATGCCTGAAGTAGACACCGG 1589
||| |||||||||||||||||||||||||| ||||||||||||||||||| ||| || ||
Sbjct 1435 AGGTTGTTCAGAACAGAGGTCAACAGAAACCCAAGCAGCAATGCCTGAAGAAGAAACTGG 1494
Query 1590 TGTAACTTATACTTTGCCTAATTTTGAAAACCAAGATAAAGACATTGATCTAGTCTCCGA 1649
||||||||||||||||| |||||||||||||| |||||||| |||||||| |||||||||
Sbjct 1495 TGTAACTTATACTTTGCATAATTTTGAAAACCCAGATAAAGGCATTGATCCAGTCTCCGA 1554
Query 1650 AAAGGATGTTGTCTCTTGTCCATCAAACGAAGCAACGGATGTTTCTACCCAATCAGAATC 1709
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AAAGGATATTGTCTCTTGTCCATCAAACGAAGCAACGGATGTTTCTACCCAATCAGAATT 1614
Query 1710 AAACAAAGGCACACAGACAAAGAAAATTGGGCGGAAGATGAACAACTCGAAAGAAAAGAA 1769
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1615 AAACAAAGGCACACAGACAAAGAGAATTGGGCGGAAGATGAACAACTCGAAAGAAAAGAA 1674
Query 1770 TCGGGGAATGCCTTCAATTGTCGATATCTTTAAGAATTACAATGCAACACCTCCATCAAA 1829
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1675 TCGGGGAATGCCTTCAATTGTCGATATCTTTAAGAATTACAATGCAACTCCTCCATCAAA 1734
Query 1830 ACAAGAGACTCAAGAAGATTCCACAGTGTCATCAGCCAGTAAAAGAGC-AAAGTTAAGTA 1888
||||||||||||||||||||||||||||||||| | ||||||| ||| ||| ||| |||
Sbjct 1735 GCAAGAGACTCAAGAAGATTCCACAGTGTCATCAACTAGTAAAAAAGCCAAATTTA-GTA 1793
Query 1889 GCAGCAGCCATAATAGTCAAGTGAATCAAGAGGTAGAAGAGAGTAGAGAAACAGATTGGG 1948
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1794 GCAGCAGCCATAATAGTCAAGTGAATCAAGAGGTAGAAGAGAGAAGAGAAACAGACTGGG 1853
Query 1949 GATATAAGACTGATGAAATCGATCAGTCAGTTTTCGATGAATTACCGGTTGAGATTCAAC 2008
| ||||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||
Sbjct 1854 GCTATAAGACTGATGAAATTGACCAGTCGGTTTTTGATGAATTACCGGTTGAGATTCAAC 1913
Query 2009 GAGAACTCAGGAGTTTCCTACGCACC-AATAAGCAGTTTAACACCGGTAAAAGCAAAGGT 2067
||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 1914 GAGAACTCAGGAGTTTCCTACGC-CCTAATAAGCAGTTTAATGCCGGTAAAAGCAAAGGT 1972
Query 2068 GATGGTTCTACTTCAAGCATTGCTCATTATTTTCCACCATTGAATAGATAGATCTAAGCT 2127
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1973 GATGGTTCTACTTCAAGCATTGCTCATTATTTTCCACCATTGAATAGATAGACCCAAGCT 2032
Query 2128 CCTTTGTCTC 2137
||||||||||
Sbjct 2033 CCTTTGTCTC 2042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84217531695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5