BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44750.2
Length=3841
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494507 jgi|Araly1|494507|fgenesh2_kg.8__323__AT5G44750.2 5788 0.0
Ahg890697 jgi|Araly1|890697|Al_scaffold_0007_2683 178 3e-43
> Ahg494507 jgi|Araly1|494507|fgenesh2_kg.8__323__AT5G44750.2
Length=3789
Score = 5788 bits (3134), Expect = 0.0
Identities = 3576/3787 (94%), Gaps = 39/3787 (1%)
Strand=Plus/Plus
Query 18 CTTCTTCTTCTCCGTCTCG-T-TGAGATTCCTCCCCAACAACAACAATGAAGCGTAGCTT 75
||||||||||||||||||| | |||||||| ||||||||||| |||||||||||||||||
Sbjct 24 CTTCTTCTTCTCCGTCTCGCTCTGAGATTCATCCCCAACAACTACAATGAAGCGTAGCTT 83
Query 76 GGGTTCAAATTCTTCAAACAATAGTGGCAGTGGAAGTAACAAGAAGTCTAAGAAGAATAA 135
|||||| |||||||| |||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 84 GGGTTCCAATTCTTCGAACAATAGTGGCAGTGGAAGTAACAAGAAGACTAAGAAGAAGAA 143
Query 136 TAATCCGAGCAATCAGAAAACCCTAGGCGCGGCATGGGGCGCTGCTTCTTCTCGTTCTTC 195
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 144 TAATCCGAGCAATCAGAAAACCCTAGGTGCCGCATGGGGCGCTGCTTCTTCTCGTTCTTC 203
Query 196 TTTCCGGTCTTCTCCTTTCTCCGATTTCGGAAGTTACATGGAAGTGAAAAATAGGAAACT 255
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 204 TTTCCGGTCTTCTCCTTTCTCTGATTTCGGAAGTTACATGGAAGTGAAAAATCGGAAACT 263
Query 256 TCAGAACCAATTTGAGACTGAGGCTTCTGCTGCTTCTCGTGGTGTTTCGGGTTCTGAGAA 315
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 264 TCAGAACCAATTTGAGACTGAGGCTTCTGCTTCTTCTCGTGGTATTTCGGGTTCTGAGAA 323
Query 316 ACTTATTTTCCAAGGGGTTTCAATCTTTGTGGATGGGTTCACTATTCCTTCTCATCAGGA 375
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 324 ACTTATTTTCCAAGGGGTTTCAATCTTTGTGGATGGTTTCACCATTCCTTCCCATCAGGA 383
Query 376 GTTGA-AAGGATACATGATGAAGTATGGTGGAAGATTTGAGAACTACTTTTCTAGGCGTT 434
|| | || |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 384 ATT-ACGAGCTTACATGATAAAGTATGGTGGAAGATTCGAGAACTACTTTTCTAGGCGTT 442
Query 435 CTGTTACACATATCATTTGCAGCAACCTTCCAGATAGTAAAGTCAAGAATCTTAGGACAT 494
|||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 443 CTGTAACACATATCATCTGCAGCAACCTTCCAGATAGTAAAGTCAAGAATCTAAGGGCAT 502
Query 495 TCAGCAGAGGATTACCTGTTGTGAAACCTACATGGATAGTGGACTCTATCTCTGCCAACA 554
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 503 TCAGCAGAGGGTTACCTGTTGTGAAACCCACATGGATAGTGGACTCTATCTCTGCCAACA 562
Query 555 GACTTCTGGGCTGGGTTCCTTACCAGCTAGATCAACTAAATGATACCCAGCCAAAGTTGT 614
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 563 GACTTCTGGGCTGGGTTCCTTACCAGCTAGATCAACTGAATGATACCCAGCCGAAGTTGT 622
Query 615 CTGCCTTTTTTGCACCCAGAAGCCATTTGACCCCTCAGATGGCTTCGCCGGTTACATCTT 674
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 623 CTGCCTTTTTTGCACCCAGAAGCCATTTGACCCCTCGGATGGCTTCGCCGGTTACATCTT 682
Query 675 TTCAGCCTGATACTGGATACAGTGAAGCTGAAGAAGGAAGTTCAATTAGAGCAGATG-AT 733
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 683 GTCCGCCTGATACTGGATACAGTGAAGCTGAAGAAGGAAGTTCAATTAGGGCAGA-GCAT 741
Query 734 TCAGAGGAAGCAAGGGACCACATCGATGATGAAATTGATGGCGTTTATATCGAGAACACT 793
| ||||||||||| ||||| | ||||||||| |||| ||||||||||||| |||||||
Sbjct 742 TTTGAGGAAGCAAGAGACCATGTTGATGATGAATTTGACGGCGTTTATATCGGGAACACT 801
Query 794 ACTCCAGAACTGACAGAACAAACAGGAACTGGTGATCTGAAATCTTCTGAAATGAATGCA 853
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 802 ACTCCAGAACTGACAGAAGAAACAGGAACTGGTGATCTGAAATCTTCTGAAATGAATGCA 861
Query 854 GAAGGACTTGGTAATTATGACATAGAAGAAAAAGAAGTTAGTAGTGAACTTCAATCCACT 913
||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 862 GAAAGACTTGCTAATTATGACATAGAAGAAAAAGAAGTGAGTAGTGAACTTCAATCAACT 921
Query 914 ACTAATCTTCATTCCACTTCAGACAACAAGTCCGTTCATGCAAATGGGAAGAATGGTGGC 973
|| || ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 922 ACCAAACTTCATTCCGCTTCAGACAACAAGTCCGTTCATGCAAATGGGAAGAATGATGGC 981
Query 974 AAATCAATTGCAACTGCTGCTGGATCTTCTACAAGGCGTCATTCAACTCTCGAGGA-CCC 1032
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 982 AAATCGATTGCAACTGCTGCTGGATCTTCTGCAAGGCGTCATTCAACTCTCGAGGATCCC 1041
Query 1033 TAATTTTGTAGAAAACTACTTTAAGAATTCAAGGCTGCATTTTATTGGAACATGGAGGAA 1092
||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1042 -AATTTCGTGGAAAACTACTTTAAGAATTCAAGGCTGCATTTTATTGGAACATGGAGAAA 1100
Query 1093 CAGGTACCGTAAAAGATTTCATGGCTCTTCCAATGGACTTAAATGGGCAGATTCAGGCCA 1152
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1101 CAGGTACCGTAAAAGATTTCATGGCCCTTCCAATGGACTTAAATGGGCAGATTCAGGCCA 1160
Query 1153 GAATACAGCTGAAATGGCCAAGAAGTCAACCATTATCCACATTGATTTGGATTGCTTCTT 1212
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 GAATACAGCTGAAATGGACAAGAAGTCAACCATTATCCACATTGATTTGGATTGCTTCTT 1220
Query 1213 TGTGTCAGTGGTAATCAAGAACCGTCTTGAATTACACGACAAGCCGGTAGCTGTATGTCA 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 TGTGTCAGTGGTAATCAAGAACCGTCTTGAATTACACGACAAGCCGGTAGCTGTATGTCA 1280
Query 1273 CTCAGATAACCCAAAAGGAACGGCTGAAATTTCATCTGCAAACTATCCAGCGCGGGCTTA 1332
|||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1281 CTCAGATAACCCGAAAGGAACGGCTGAAATTTCATCTGCAAATTATCCAGCTCGGGCTTA 1340
Query 1333 TGGAGTGAAGGCAGGTATGTTTGTAAGACATGCAAAAGACCTTTGCCCTCAGCTTGTTAT 1392
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1341 TGGAGTGAAGGCAGGTATGTTTGTAAGACATGCAAAAGAGCTTTGTCCTCAGCTTGTTAT 1400
Query 1393 TGTTCCTTACAACTTTGAAGCCTACGAAGAGGTAGCTGATCAGTTTTATGACATCTTGCA 1452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 TGTTCCTTACAACTTTGAAGCCTACGAAGAGGTAGCTGATCAGTTTTATGACATCTTGCA 1460
Query 1453 TAGGCATTGCAGAAAAGTCCAGGCGCTAAGCTGCGATGAAGCGTTTTTAGATGTCTCAGA 1512
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1461 TAGGCATTGCAGAAAAGTCCAGGCACTAAGCTGCGATGAAGCGTTTTTAGATGTCTCAGA 1520
Query 1513 TTTGAGTGATGTAGAAACCGAAGTTTTAGCCTCGACAATAAGGAATGAGATCCTTGAGAC 1572
|||||| ||||||||| ||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1521 TTTGAGGGATGTAGAACCCGGATTTTTAGCCTCGACAATAAGGAATGAGATCCTTGAGAC 1580
Query 1573 TACTGGATGCAGTGCAAGTGCTGGAATAGGCGGTACTATGCTAATGGCTCGTCTTGCTAC 1632
|||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1581 TACTGGATGCAGCGCAAGTGCTGGGATAGGCGGTACTATGCTAATGGCCCGTCTTGCTAC 1640
Query 1633 CAGAGTTGCTAAACCAGCCGGTCAACTTTATATTTCTGCTGAGAAGGTAGAGGAGTTCTT 1692
||||||||||||||||||||| || |||||||| |||||||||||||| |||||||||||
Sbjct 1641 CAGAGTTGCTAAACCAGCCGGCCAGCTTTATATCTCTGCTGAGAAGGTTGAGGAGTTCTT 1700
Query 1693 GGATCAGCTTCCAGTCGGGACACTACCTGGTGTAGGTTCTGTGTTGAAGGAGAAGCTGGT 1752
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1701 GGATGGGCTTCCAGTCGGGACACTACCTGGTGTAGGTTCTGTGTTGATGGAGAAGCTGGT 1760
Query 1753 GAAGCAAAATATTCAAACCTGTGGGCAGTTACGTTTGATTTCCAAGGATTCTCTTCAAAA 1812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1761 GAAGCAAAATATTCAAACCTGTGGGCAGTTACGTTTGATTTCCAAGGATTCTCTTCAAAA 1820
Query 1813 GGATTTTGGGGTAAAAACCGGCGAGATGCTTTGGAGTTATAGCAGAGGACTAGACCTACG 1872
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1821 GGATTTTGGGGTGAAAACCGGCGAGATGCTCTGGAGTTATAGCAGAGGACTAGACCTACG 1880
Query 1873 GTCAGTTACAGCAGTGCAGGAGAGTAAGTCCATAGGGGCTGAAGTGAATTGGGGTGTGCG 1932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1881 GTCAGTTACAGCAGTGCAGGAGAGTAAGTCCATAGGGGCTGAAGTGAATTGGGGTGTGCG 1940
Query 1933 GTTCAGAGATCAGCAAGACGTCTTTATTCTCGTTCAACACTTCCTCCAATGCCTATGCAA 1992
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1941 GTTCAGAGATCAGCAAGATGTCTGTATTCTCGTTCAACACTTCCTCCAATGCCTATGCAA 2000
Query 1993 AGAAGTTTCTTTGCGTCTGCAAGGATGTGAAATGATAGGACGCACTTTTACTCTTAAGAT 2052
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2001 AGAAGTTTCTTTGCGTCTGCAAGGATGTGAAATGATAGGACGCAATTTTACTCTTAAGAT 2060
Query 2053 aaaaaagagaaaaaaaGATGCTGAAGAACCTACAAAGTATATGGGTTGTGGAGACTGTGA 2112
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2061 AAAAAAGAGAAAAAACGATGCTGAAGAACCTACAAAGTATATGGGTTGTGGAGACTGTGA 2120
Query 2113 CAATCTGAGTCGCTCCATCACGGTGCCTGCTGCTACAGATGACATAGAAGTTCTGCAGAG 2172
|||||||||||| |||||||| |||||| |||||||||||||| ||||||||||||||||
Sbjct 2121 CAATCTGAGTCGTTCCATCACTGTGCCTACTGCTACAGATGACGTAGAAGTTCTGCAGAG 2180
Query 2173 GATTTCAAAGAAGTTGTTTGGGTCATTTTGCTTGGATGTAAAGGAAGTTCGTGGGGTTGG 2232
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2181 GATTTCAAAGAAGTTGTTTGGGTCATTTTGCTTGGATGTTAAGGAAGTTCGTGGGGTTGG 2240
Query 2233 GCTTCAGGTCTCTAAGCTTGACAGTGCAGATCCTTCTAATAAAGGTTCAAGGACTCTGAA 2292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2241 GCTTCAGGTCTCTAAGCTTGACAGTGCAGATCCTTCTAATAAAGGTTCAAGGACTCTGAA 2300
Query 2293 ATCATGGCTCAGCTCTGCACCTGCCGT-TGTCCAAATAGAACAAGATGATAATGTTTTTG 2351
||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||
Sbjct 2301 ATCATGGCTCAGCTCTGCATCTGCC-TCTGTCCAAATAGAACAAGATGATAATGTTTTTG 2359
Query 2352 CTGCAAAGGTTAGGGAAAACTCAGATTGTAACAGGCCTGTTACTGGTGGAGTTTCTAGAC 2411
||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 2360 CTGCAAAAGTTAGGGAAAACTCAGATTGTAATAGGCATGTTACTGGTGGAGTTTCTAGAC 2419
Query 2412 TCCGAGAATCTAATTCAGAAGAATCTTCAATTCAGTCAGGTGATACAAATTCATCCTTAC 2471
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2420 TCCGAGAATCTAATTCAGCAGAATCTTCAATTCAGTCAGGTGATACAAATTCATCCTTAC 2479
Query 2472 CGCCCATGTGTTATCTCGACATGGAAGTTCTAGAGAACCTTCCTCCAGAGCTCCTTTCAG 2531
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2480 CGCCTATGTGTCATCTCGACATGGAAGTTCTAGAGAACCTTCCTCCAGAGCTCCTTTCTG 2539
Query 2532 AATTAGATGGAACCTACGGTGGGAAGCTGTTTGAGTTGATTGAGAAAAAACGAGGCAAAA 2591
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2540 AATTAGATGGAACCTACGGTGGGAAGTTGTTTGAGTTGATTGAGAAAAAACGAGGCAAAG 2599
Query 2592 GAAGAATCAACT-GCAACTCTCCACATGTCTCCTTGGATGGCACTGCTGCTAGCATTAAA 2650
||| |||||| | |||| ||||||||||||||||||||||||||||||| | ||||||||
Sbjct 2600 GAAAAATCAA-TAGCAATTCTCCACATGTCTCCTTGGATGGCACTGCTGGTGGCATTAAA 2658
Query 2651 GAATTAAAATCTCTCTCAGTTAAGATACATGGCTTGAGCACCTCTGGAGAAAAGGAATAT 2710
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2659 GAATTAAAATCTCTCTCAGTTAAGATACATGGCTTGAGCACCTCTAGAGAAAAGGAATAT 2718
Query 2711 AAAGAACCATATGTGCCGCATCCTTCCATTGCCAGAACGTCTAATCAGCATACAATAGAA 2770
|||||||| ||||||||||||||||||||||||||||| |||||||| | ||||||||||
Sbjct 2719 AAAGAACCGTATGTGCCGCATCCTTCCATTGCCAGAACTTCTAATCATCGTACAATAGAA 2778
Query 2771 ATGACGGATTTGTTGCCTTCATCCCTTAGTCAAGTCGACGTCTCTGTGTTACAAGAATTA 2830
||||| |||||| | ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2779 ATGACTGATTTGATACCTTCATTCCTTAGTCAAGTCGACGTCTCTGTGTTACAAGAATTA 2838
Query 2831 CCTGAAGAGTTGAGAGCTGACGTATTGGGAGCATTTCCTTCACA-CAGGAGACAACAGTC 2889
|||||||| ||||| | |||||||||||||||||||||| | || |||||||||||||||
Sbjct 2839 CCTGAAGAATTGAGGGTTGACGTATTGGGAGCATTTCCTGC-CAACAGGAGACAACAGTC 2897
Query 2890 ATCATCAGATGTTCCCAAGGAGACTTGTAAGAAACAAGATGAGGAACCAATAGATTTAAA 2949
||||||| ||||||||| ||||||||||||||||||||||||||| || |||||| ||||
Sbjct 2898 ATCATCAAATGTTCCCATGGAGACTTGTAAGAAACAAGATGAGGAGCCGATAGATATAAA 2957
Query 2950 GGGCACTGAGAATGAGATTGGATTATCATTTAGCTCTCTTTGGTTTGGGAATCCTCCTCT 3009
||||||||||||| |||||||||| |||| |||||||| |||||||||||||||||||||
Sbjct 2958 GGGCACTGAGAATAAGATTGGATTCTCATGTAGCTCTCGTTGGTTTGGGAATCCTCCTCT 3017
Query 3010 TTGGACAGAGAAGTTCAAAGTTAGTGGCAATTGTACTATGGAAAAACTTTCAGCGATATA 3069
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 3018 TTGGACAGAGAAGTTCAAAGTTAGTGGCAATTGTACTTTGGAAAAACTTTCAGGGATATA 3077
Query 3070 CTTCAAGGTTGCTCAGTCAAGGCCCATGTTATCCCTAGTCCTGCAACACGCTATTTCAGA 3129
||||||||||||||||| ||| || |||||||||| ||||| |||||||||||||||||
Sbjct 3078 CTTCAAGGTTGCTCAGTTAAGACCTATGTTATCCCGGGTCCTACAACACGCTATTTCAGA 3137
Query 3130 AATGAGTAGTTTTCCTGATGCAGCAAGTGCCAGTGATTTGGACAAAGCTATTTACGATGT 3189
||| |||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 3138 AATCAGTAGTTTTCATGATGCAGCAAGTGCCAATGATTTGGACAAAGCTATATACGATGT 3197
Query 3190 GTGTGAACTTCTTAAACAGTACATTAACCTCAAGGTAGGAGGTGATATTGAGGAGATATA 3249
||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||
Sbjct 3198 GTGTGAACTTCTTAAACAGTACATTAAGCTCAAGGTAGAAGGTGATATTGAAGAGATATA 3257
Query 3250 TCTCTGCTTCCGACTTCTGAAAAGATTAGCAGCAAGGAGCCAGCTTTTCCTACAAGTCTA 3309
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3258 TCTCTGCTTCCGACTTCTGAAAAGATTAGCAGCAAGGAGCCAACTTTTCCTACAAGTCTA 3317
Query 3310 TGAGATATTGTCTCCCTTTATTCAGGCCTCGATCAGTGAACACTATGGAGGAAGCTTGAG 3369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3318 TGAGATATTGTCTCCCTTTATTCAGGCCTCGATCAGTGAACACTATGGAGGAAGCTTGAG 3377
Query 3370 TATACCATGAAAGGTCTTCACTGAGGTTGGACTGAAGTCTGGCTGGATGCTATAAAAGAA 3429
||| || |||||| |||| ||||||||||| |||||||||||| | ||||||||||||||
Sbjct 3378 TATTCCTTGAAAGATCTTTACTGAGGTTGGGCTGAAGTCTGGCCGAATGCTATAAAAGAA 3437
Query 3430 TGTATACTTGCAGGACAATGTGGATTCTGAAGGGCATCATGGTGAACGCACACGGACAAT 3489
||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||
Sbjct 3438 TGTATACTTGCAGGACAATGTGGATCCTGAAGGGCATCATGGTGAATGCACTCGGACAAT 3497
Query 3490 ACACGAAGCAGCTTAAGCAAAC--CAAACTCGGGAAGATTTTTGGGCAATAGA-AGGCTA 3546
||||||||||||||||| |||| ||| | | ||| | | | |||| | ||
Sbjct 3498 ACACGAAGCAGCTTAAGAAAACGGCAA--TAG--AAGGCTA--G--C--TAGATA---TA 3544
Query 3547 GCTGCTGCAAATCCGCGTGTGAAATGGAGTCTCGAAAGCACTTATTGTTGCATTTGCACA 3606
|||||||||| ||||||| |||||||||||||||| ||| ||||| |||||||||||
Sbjct 3545 T-TGCTGCAAATTCGCGTGTCAAATGGAGTCTCGAAAACACCCATTGTGGCATTTGCACA 3603
Query 3607 ATGAGATATGGAAGTGATTCAAATCTCAAAGTGCAGAGCCATTAGGAGCCACTGCTTTTC 3666
||| ||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 3604 ATGGGATATGGAAGTTATTCAAATCTCAAAGTGCAGAGCCATTAGGAGCAACTACTTTTC 3663
Query 3667 TCTGTTCATAGAAATGTAACTGAACTTGATAATCATTTCTTCCCATGACACGAGCT-A-- 3723
||||||||||| |||||| |||||||||||||||||||| ||||||||||||||| |
Sbjct 3664 TCTGTTCATAGGAATGTATCTGAACTTGATAATCATTTCGTCCCATGACACGAGCGCAGC 3723
Query 3724 ---ATATATCACCTAGTTCCTTGTTCATGAATTGTCTTTATTT-TTAAAAACGATAATTT 3779
|||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||
Sbjct 3724 TGTATATATCACCTAGTTCCTTGTTCATGAATTTTCTTTATTTGTTAAAA-CGATAATTT 3782
Query 3780 ATTCTCT 3786
|||||||
Sbjct 3783 ATTCTCT 3789
> Ahg890697 jgi|Araly1|890697|Al_scaffold_0007_2683
Length=408
Score = 178 bits (96), Expect = 3e-43
Identities = 177/213 (83%), Gaps = 18/213 (8%)
Strand=Plus/Plus
Query 2838 AGTTGAGAGCT--GACGTATTGGGAGCATTTCCTTCACACA-GGAGACAACAGTCATCAT 2894
||||||||| | || | ||| |||||||||||| | |||| || |||||||||||||||
Sbjct 188 AGTTGAGAGTTGGGA-GCATT-GGAGCATTTCCTACCCACATGG-GACAACAGTCATCAT 244
Query 2895 CAGATGTTCCCAAGGAGACTTGTAAGAAACAAGATGAGGAACCAATAGATTTAAAGGGCA 2954
|||||||||||||| | | | ||||||||||| | |||||| |||||||||
Sbjct 245 CAGATGTTCCCAAG-A-A-----A-----CAAGATGAGGAGTCGATAGATATAAAGGGCA 292
Query 2955 CTGAGAATGAGATTGGATTATCATTTAGCTCTCTTTGGTTTGGGAATCCTCCTCTTTGGA 3014
|| ||||||||| |||||| |||| ||||||||| |||||||||||||||||| ||||||
Sbjct 293 CTAAGAATGAGACTGGATTCTCATGTAGCTCTCTCTGGTTTGGGAATCCTCCTATTTGGA 352
Query 3015 CAGAGAAGTTCAAAGTTAGTGGCAATTGTACTA 3047
|| ||||||||||| || | |||||||||||||
Sbjct 353 CATAGAAGTTCAAACTTTGGGGCAATTGTACTA 385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 145151583422
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5