BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44760.1
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494505 jgi|Araly1|494505|fgenesh2_kg.8__321__AT5G44760.1 1807 0.0
> Ahg494505 jgi|Araly1|494505|fgenesh2_kg.8__321__AT5G44760.1
Length=1413
Score = 1807 bits (978), Expect = 0.0
Identities = 1291/1440 (90%), Gaps = 30/1440 (2%)
Strand=Plus/Plus
Query 1 ATGGCAGAGCACGACTTCTCTCTTAAGGAAACATGTCCCAAAATCGGCGGCCGAAGATCA 60
||||||||| ||||||||||||| || |||||||||||||||||||||||| ||||||||
Sbjct 1 ATGGCAGAGAACGACTTCTCTCTAAAAGAAACATGTCCCAAAATCGGCGGCGGAAGATCA 60
Query 61 ATTCCCGGCGGTGACATGCTAACGTCATCATTTGACCTCGTCGAACGCATGACCTTCCTC 120
|||||||||||||| ||||| |||||| |||| || ||||||||||| ||||| || |||
Sbjct 61 ATTCCCGGCGGTGAAATGCTGACGTCAACATTCGATCTCGTCGAACGAATGACATTTCTC 120
Query 121 TACATCCGAATCGTTAAGGCTCGAGCTTTACCTTCCAACGACTTATTCGTTGAAGTAACA 180
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 121 TACATCCGAATCGTTAAGGCTCGAGCTTTACCTTTTAATGACTTATTCGTTGAAGTCACA 180
Query 181 ATCGGTAGATACAAAGGAAGAACGAAACGTAGCACAAACCCTTACCCTAATCTGGAG-TT 239
|||||||| |||||||||||||| ||||||| |||||||||| ||||||||| |||| ||
Sbjct 181 ATCGGTAGCTACAAAGGAAGAACCAAACGTAACACAAACCCTAACCCTAATCCGGAGTTT 240
Query 240 CGACGAAGTTTTCGCCTTTAATAGTGATCGTCTTCAAGGAAATATGTTGGAAGTGACCAT 299
| ||||||||||||||||||||||||||||||| ||||||||| | ||||||||| ||||
Sbjct 241 C-ACGAAGTTTTCGCCTTTAATAGTGATCGTCTCCAAGGAAATGTCTTGGAAGTGGCCAT 299
Query 300 GAAGATGAACGAAGAAGAGATTATTGGACAGTGTAGATTCGAGGTGGCTGAGATTCCTAC 359
|||| |||||||||||||| | |||||| ||||||||||||| || ||||||||||| ||
Sbjct 300 GAAGGTGAACGAAGAAGAGGTAATTGGAAAGTGTAGATTCGAAGTAGCTGAGATTCCAAC 359
Query 360 ACGTATCCCACCGGATAGTCCATTGGCTCCACAATGGGATAGGTTAGAAGATAGAAATGC 419
|||| |||| ||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 360 ACGTGTCCCTCCGGATAGTCCATTGGCTCCACAATGGTATAGATTAGAAGATAGAAATGG 419
Query 420 GAACAGATTTGGAGAAGAGGTTATGGTATCTGTATGGATGGGGACACAAGCCGATGAAGT 479
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 420 GAACAGATTTGGAGGAGAGGTTATGTTATCTGTATGGATGGGGACACAAGCCGATGAAGT 479
Query 480 TTGCCCTGAGGCTTGGCATTCGGATTCGGCTACAGTGACTGGAGAAAACGCGGTGATTGT 539
|| |||||||||||||||||||||||| ||||| ||||| |||||||||| |||||||
Sbjct 480 TTTCCCTGAGGCTTGGCATTCGGATTCCGCTACGGTGACCGGAGAAAACGTGGTGATTAC 539
Query 540 GCGGTCTAAAGTGTATCTATCTCCGAGGTTATGGTATTTGCGAGTCAATGTTATAGAGGC 599
|||||||||||||||||||||||||||| |||||||||||||||| |||||||| || ||
Sbjct 540 GCGGTCTAAAGTGTATCTATCTCCGAGGCTATGGTATTTGCGAGTGAATGTTATTGACGC 599
Query 600 TCAAGTTTTGGTTCTGTTGCAAGGAAACAGAACAAATCCGGAGGTT-TTAGTAAAAGGGT 658
||||| |||||||| |||||||| ||||||||| |||| ||| ||| ||||||||||||
Sbjct 600 TCAAGATTTGGTTCCGTTGCAAGCAAACAGAACGAATCTGGA-GTTCTTAGTAAAAGGG- 657
Query 659 TTGTAGGAAATGTTGTTGTGAGGAGTCGGGTTTCGCAGAGTCGAACAATGAGTCCAGTTT 718
|| || | | | | ||||| ||||| | || | | | || | | | | |
Sbjct 658 TT-TACG---CG--G--ACAATGAGTCCGGTTT-G--GA-TTG-AGGAT-A-T-GA-TCT 700
Query 719 TGGAACGAGGATATGATGTAGGTCAAAAAGAAGAGTGTTTAGGTCTATGTGAGATAAAGT 778
| ||| | |||| | ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 701 T-GAA--A-GATA--AGGTAGGTCAAAAAGAAGAGTCTTTAGGTAGATGTGAGATAAAGT 754
Query 779 TGTCTCAGGTTGAGAGACGGGTATTGCCGGGACCTGTACCGGCTCTATGGTATAACCTGG 838
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 755 TGTCTCAGGTTGAGAGACGGGTATTGCCCGGACCTGTACCGGCTCTATGGTACAACCTTG 814
Query 839 AGCGCGTTGGGGACTCGGGATTCGCAGGGAGGATTCATTTGCGGGTTTCATTGGACGGAG 898
|||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AGCGGGTCGGGGACTCAGGATTCGCAGGGAGGATTCATTTGCGGGTTTCATTGGACGGAG 874
Query 899 GATACCATGTGCTTGATGAGTCGATTCAGTATAGCAGTGACTACAGAGCTTCTGCTAAGC 958
|||||||||| || || ||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 875 GATACCATGTCCTCGACGAGTCGATTCAGTATAGCAGTGATTACAAAGCTTCTGCTAAGC 934
Query 959 TTCTATGGACTCCAACTATTGGTGTATTGGTGCTCGGAGTCATCAGTGCATCTGGTTCGA 1018
|| ||||||||||| |||||||||| |||| ||| ||||||| ||||||||| |||| ||
Sbjct 935 TTTTATGGACTCCAGCTATTGGTGTGTTGGAGCTTGGAGTCAACAGTGCATCCGGTTTGA 994
Query 1019 TTCCGATGAAGTCCCGAGATGGTCGAGGCACCACCGATGCATATTGCGTGGCGAAATATG 1078
| |||||||||||||||||||||||||| || |||||||| ||||| |||||||||||||
Sbjct 995 TGCCGATGAAGTCCCGAGATGGTCGAGGAACGACCGATGCTTATTGTGTGGCGAAATATG 1054
Query 1079 GGCAAAAATGGCTAGGTCGGAGTGAGCCGCCTCTAGGAAGAGATGTAATTGAGTATATGC 1138
|||| ||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1055 GGCAGAAATGGCTAGGCCGGACTGAGCCGCCTCTAGGAAGAGATGTAGTTGAGTATATGC 1114
Query 1139 TCGATTTCGGATCTAACATTTGGTGTTTACGAAGAGGCAGAGCTCATTTCGAAAGAATTG 1198
||||||| ||||||||||||||| ||||||||||||| ||||| |||||||| ||||||
Sbjct 1115 TCGATTTTGGATCTAACATTTGGAGTTTACGAAGAGGAAGAGCGAATTTCGAACGAATTG 1174
Query 1199 TGAGTTTCTTCACAACGTTTATTGATTCTTGGATTTGGTTTGATTCGGTATGCAAATGGA 1258
||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 TGACTTTCTTCACCATGTTTATTGATTCTTGGATTTGGTTTGATTCGGTATGCAAATGGA 1234
Query 1259 AGAGTCCGCTATCTAAAGCAGATTCGGCTTTACCCGATGAGCTAGACGAGGAATTCGATG 1318
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1235 AGAGTCCGCTGTCTAAAGCAGATTCGGCTTTACCCGATGAGCTAGACGAGGAATTTGATG 1294
Query 1319 GGTTTCCAAGCGC-AAGATCTGCGGATTTGGTTAGGAACAGTGGCTTGTGGAGTAATCTT 1377
||||||| || || || |||| |||||||||| | ||| ||| |||||||||||||||||
Sbjct 1295 GGTTTCCGAGTGCGAA-ATCTCCGGATTTGGTGAAGAAAAGTTGCTTGTGGAGTAATCTT 1353
Query 1378 CTTAGTCTCCATGAAACTGCTAATGACTTTGCTTGCGTTCTACGTCATGAGACACCCTAG 1437
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1354 CTTAGTCTCCATGAAACTGCTGATGACTTTGCTTGCGTTCTACGTCATGAGACATCCTAG 1413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53745335695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5