BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44780.1
Length=2322
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494504 jgi|Araly1|494504|fgenesh2_kg.8__320__AT5G44780.1 1426 0.0
> Ahg494504 jgi|Araly1|494504|fgenesh2_kg.8__320__AT5G44780.1
Length=2279
Score = 1426 bits (772), Expect = 0.0
Identities = 988/1090 (91%), Gaps = 24/1090 (2%)
Strand=Plus/Plus
Query 1145 TACCACCAAGGTCAAGGAGCTCAGACGCCTCCATACCAAGAATCACCAAACAATTACGGT 1204
||| |||||||||||||||||||||||||||||||||||| || ||||||||||||| ||
Sbjct 1196 TACAACCAAGGTCAAGGAGCTCAGACGCCTCCATACCAAGGATTACCAAACAATTACAGT 1255
Query 1205 CAAGGAGCATTTGTGCAATACAACCAAGGGCCACCACAAGGAAACGTTGTCCAAACGACA 1264
||||||||||||||||||||||||||||||||||| ||||||||| || ||| | ||||
Sbjct 1256 CAAGGAGCATTTGTGCAATACAACCAAGGGCCACCGCAAGGAAACTTTATCCCAGGGACA 1315
Query 1265 CAAGAAAAATACAACCAAATGGGCCAAG-GGAATTACGCTCCACAGAGTGGTGGAAACTA 1323
|||||||| |||| ||||||||||| || ||| |||| ||||||||||||||||||||||
Sbjct 1316 CAAGAAAATTACAGCCAAATGGGCC-AGAGGAGTTACACTCCACAGAGTGGTGGAAACTA 1374
Query 1324 TAGTCCTGCACAAGGAGCAGGAAGTCCAAGATTTGGATATGGGCAAGGTCAAGGAGGTCA 1383
| ||||| |||| ||||||||||||| | |||||||| ||||||||||||||||||||||
Sbjct 1375 TGGTCCTTCACATGGAGCAGGAAGTCTAGGATTTGGACATGGGCAAGGTCAAGGAGGTCA 1434
Query 1384 GTTATTGTCTCCATATCGAGGGAATTACAACCAAGGCCAGGGAACTCCGCTGCCAGGACA 1443
||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1435 GTTATTGTCTCCATATCAAGGGAGTTACAACCAAGGCCAGGGAACTCCGCTGACAGGACA 1494
Query 1444 AGGCCAAGAAGGTC--A-ACCTTCATATCAGATGGGTTTCAGCCAAGGCTTAGGAGCTCC 1500
|||||||||||||| | |||||||||||| |||||| |||||||||||||||||||||
Sbjct 1495 AGGCCAAGAAGGTCAAATACCTTCATATCATATGGGTAACAGCCAAGGCTTAGGAGCTCC 1554
Query 1501 GGTGCCTCCGAACCAAGTAATACCAGGCAATTATGGTCAATGGGCATTTGTGAACTACAA 1560
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1555 GGTGCCTCCGAACCAAGTAACACCAGGCAATTATGGTCAATGGGCATTTGTGAACTATAA 1614
Query 1561 CCAAGGACCACCACAAGGTAACTTTCTCCAAGGACCACAACAAAATCACAACCAAGGAGG 1620
||||||||| ||||| |||||||||||||||||||| ||||||||| |||| ||||||||
Sbjct 1615 CCAAGGACCGCCACATGGTAACTTTCTCCAAGGACCCCAACAAAATTACAATCAAGGAGG 1674
Query 1621 TCAATGGAATTACAGTCCACAGAACGGTGGACACTATGGTCCTGCACAGTTTGGACAGTG 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 TCAATGGAATTACAGTCCACAGAACGGTGGACACTATGGTCCTGCACAGTTTGGACAGTG 1734
Query 1681 GTATCCTGGACCCCCTCAAGGTCAAGGAATTCAATGGCCCCAATATCAGCTTAGTTACAA 1740
||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1735 GTATCATGGACCCCCTCAAGGTCAAGGAAATCAATGGCCTCAATATCAGCTTAGTTACAA 1794
Query 1741 TCAAGGCCAAGGAACTCCATTTTCTGGACAATGTCGATGTCCAA-ATTGTGGAATGACTT 1799
|||||||||||||||||||||| ||||||||||| ||||||| || |||||||| |||
Sbjct 1795 TCAAGGCCAAGGAACTCCATTTCCTGGACAATGTTTATGTCCAGGAT-GTGGAATGCCTT 1853
Query 1800 CATACCAGGGGTA-TAACAATCAAGGCCAAGGAACTCATATCCCTGAACAATGGGAAGGT 1858
|||| |||||| | | ||||||||||||||||||||||||||| || ||||| |||||
Sbjct 1854 CATATCAGGGG-AGTTACAATCAAGGCCAAGGAACTCATATCCATGGACAATTTCAAGGT 1912
Query 1859 CAAG-ATTATGCAGTGCTTTCATATCAGGCTAGTTACAATCA-AGCCCATGGAGCACAGG 1916
|||| || |||| ||| |||||||||||| ||||| | ||| || | | |||| | ||
Sbjct 1913 CAAGGATG-TGCAATGCCTTCATATCAGGCGAGTTATAGTCACAGTCAA-GGAGTTCCGG 1970
Query 1917 --C----G---CCTCCATACCATGGAAACTACAATCAAGCAACACC-AGGCGGTTACGGT 1966
| | |||||||||||||||||||| |||| || | |||| || | |||||||
Sbjct 1971 TTCCTCTGGTTCCTCCATACCATGGAAACTATAATCCAGGACCACCTAG-CAGTTACGGG 2029
Query 1967 CAAGGAACATCTGCAAACTTCAACCAAAGATTTCCAGTGAACCCCGCAAATTACAATATG 2026
||||| |||||| ||||| |||||||| |||||||||||||||| |||||||||||||||
Sbjct 2030 CAAGGGACATCTACAAACATCAACCAAGGATTTCCAGTGAACCCAGCAAATTACAATATG 2089
Query 2027 CAGAACGGTGGAAACTATGGTCCTCCACATGGATTAGCAGGAAATCCAGGATTTAGACAA 2086
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2090 CAGAACGGTGGAAACTATGGTCCTCCACATGAATTAGCAGGAAATCCAGGATTTAGACAA 2149
Query 2087 GGGTTTTCTGGACAAGGACAGAATCAAACATTTCAACAAGACGATCAGAGAAATGTAGCA 2146
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2150 GGGTTTACTGGACAAGGACAGAATCAAACATTTCAACAAGAGGATCAGAGAAATGTAGCA 2209
Query 2147 GGTGACTTGAGAAACAATAATCCTGTAGACCCAACTGAAACCAGAAAACCAAATTCTCGA 2206
|||| |||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 2210 GGTGGCTTGAGCAACAATAATCCTGCAGACCCAACTGTAACCAGAAAACCAAATTCTCGA 2269
Query 2207 ATATAAGCGA 2216
| ||||||||
Sbjct 2270 ACATAAGCGA 2279
Score = 1301 bits (704), Expect = 0.0
Identities = 938/1050 (89%), Gaps = 20/1050 (2%)
Strand=Plus/Plus
Query 22 TTCTAAATCTCCGGCATCAATGGCCATGTTCTCGCATCGTCTCCGACGAATAGTTGTCGC 81
|||| ||||||||||||||||||||||| |||| || |||||||||||| | || ||||
Sbjct 1 TTCTCAATCTCCGGCATCAATGGCCATGCTCTCACACCGTCTCCGACGAGTTCTTATCGC 60
Query 82 CGCACCTTCCTATTTCCAACGATTC-TCCACTCTATCTCGTCCCTCCGATTTCACTCCCG 140
||||||||||||||||||||||| | ||| ||||||||| ||||||||||||| ||||||
Sbjct 61 CGCACCTTCCTATTTCCAACGATCCTTCC-CTCTATCTCATCCCTCCGATTTCCCTCCCG 119
Query 141 TGCCATCGTTATTACCGAGATCTGTGGTGAAGCAATCGACGGCAA-TTAATCGATCTCCC 199
|| |||| |||||||||||||||||||||||||| ||||||| || || | ||||||
Sbjct 120 TGTCATCTTTATTACCGAGATCTGTGGTGAAGCAGTCGACGG-AATTTGGTAAATCTCCG 178
Query 200 GCGAGATTGTTCTCGACGACTCAGTATCAGTATGATCCATACACTGGAGAAGATTCTTTC 259
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 179 GCGAGATTGTTCTCGACGACTCAGTATCAGTATGATCCGTACACTGGAGAAGATTCGTTC 238
Query 260 ATGCCGGATAATGAAGGATGCGATTTTAATCATTGGTTAATTACAATGAATTTCCCTAAA 319
||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 239 ATGCCTGATAACGAAGGTTGTGATTTTAATCATTGGTTAATTACAATGAATTTCCCTAAA 298
Query 320 GATAATCTTCCATCTAGAGAAGAAATGATTTCGATTTTTGAGCAAACTTGCGCCAAAGGA 379
|||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 299 GATAATGTTCCATCTAGAGAAGAAATGATTTCGATTTTTGAGCAAACTTGTGCTAAAGGA 358
Query 380 CTTGCTATTAGTTTGGAAGAAGCTAAGAAGAAAATTTATGCAATTTGCACAACAAGTTAC 439
|||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 359 CTTGATATAAGTTTGGAAGAAGCTAAGAAGAAAATATATGCAATTTGCACAACAAGTTAC 418
Query 440 CAAGGTTTTCAAGCAACAATGACTATAGGAGAAGTAGAGAAGTTTAGAGATTTGCCTGGT 499
||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 419 CAAGGGTTTCAAGCAACAATGACTATAGGAGAAGTAGAAAAATTTAGAGATTTGCCTGGG 478
Query 500 GTTCAATACATAATACCTGATTCGTATATTGATGTTGAGAATAAGGTTTATGGAGGAGAC 559
|||||||||||||| |||||||| ||| ||||||||||||||||||||||||||| ||
Sbjct 479 GTTCAATACATAATTCCTGATTCTTATGCTGATGTTGAGAATAAGGTTTATGGAGGTGAT 538
Query 560 AAATATGAGAATGGAGTGATCACACCTGGGCCTGTTCCTGTCCCTACTAAAGAGGGGTTT 619
||||| ||||||||||||||||||||||| | ||||||| ||||||||||| || |||
Sbjct 539 AAATACGAGAATGGAGTGATCACACCTGGTCAAATTCCTGTTCCTACTAAAGAAGGATTT 598
Query 620 GATTCTTTAAAGAAGGAGAGTAAGCCGGAACAAGAGGAAGCTGAAATAATTCTAACGCCT 679
|||||| || ||||||||||||||||||||| |||||||||| ||||||||| |||||||
Sbjct 599 GATTCTCTAGAGAAGGAGAGTAAGCCGGAACTAGAGGAAGCTCAAATAATTCAAACGCCT 658
Query 680 CCAGATGAGGGTAAAACCTCAGGACAAGTGCAAGGTCAAGGAAGTCTAACGCTTCCAGAT 739
||||||||||||||| ||||||||||||||||| | ||||||||| ||||| |||||||
Sbjct 659 TCAGATGAGGGTAAAATCTCAGGACAAGTGCAAGATGAAGGAAGTCAAACGCCTCCAGAT 718
Query 740 CAGAGGAGTGTCAAG-GAAAGACAAGGAACTCTTGCTCTAGTACAAGGCCAAGGTCAAAG 798
||||||||||||||| ||| | |||||| || ||| | ||| |||||| |||||||||||
Sbjct 719 CAGAGGAGTGTCAAGCGAATG-CAAGGAGCTATTGATTTAGGACAAGGGCAAGGTCAAAG 777
Query 799 AAGTGGAATGTCTATCCTTGGACAAGGGCAAGGTGAAGGAAGGCGAATGTCTATTCCTGG 858
|||| |||||| |||| |||||||||||| ||||||||||| |||||||| ||||| ||
Sbjct 778 AAGTCAAATGTCGATCCCTGGACAAGGGCAGGGTGAAGGAAGTCGAATGTCAATTCCAGG 837
Query 859 ACAATGGCAAAGTCGAGGTCAAGGAAAT----T-CATTT----CAAGGGAGTTTCAAGCA 909
|||| |||| |||||||||||||||||| | | ||| |||||| ||||||||||
Sbjct 838 ACAAGGGCATAGTCGAGGTCAAGGAAATCGAATGCCTTTTATGCAAGGGGGTTTCAAGCA 897
Query 910 GAGCCAGGGAACTCTGCCCGT-GCGAAAAGGGCAAACTCAAATAAGTGATGAAATACCTT 968
|||||||||||||||| | || | || ||||||||||||||| |||||| || | ||||
Sbjct 898 GAGCCAGGGAACTCTGTCTGTAG-GACAAGGGCAAACTCAAAGAAGTGA--AA-TGCCTT 953
Query 969 CGTTCCAAGGAAATGTTAAGCAAAGACAAGAAATGCCAATCCATGGACAAGGGCAAGCTC 1028
| ||||||||||||||||| ||| || ||||||| |||||| |||||||| |||||||||
Sbjct 954 CATTCCAAGGAAATGTTAAACAAGGAGAAGAAATACCAATCAATGGACAATGGCAAGCTC 1013
Query 1029 AACGAAGTCAAATGCCTTCATCTCAGGGGA 1058
|||||||||||||||||||||||||||||
Sbjct 1014 CACGAAGTCAAATGCCTTCATCTCAGGGGA 1043
Score = 132 bits (71), Expect = 1e-29
Identities = 77/80 (96%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 1070 GGACAAGCTCAAGGAAGTCAAAGACCTTCCAATCAGGTGGGTTACAACCAAGGTCAAGGA 1129
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1154 GGACAAGGGCAAGGAAGTCAAATACCTTCCAATCAGGTGGGTTACAACCAAGGTCAAGGA 1213
Query 1130 GCTCAGACGCCTCCATACCA 1149
||||||||||||||||||||
Sbjct 1214 GCTCAGACGCCTCCATACCA 1233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87455202520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5