BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44785.2
Length=1644
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494502 jgi|Araly1|494502|fgenesh2_kg.8__318__AT5G44785.2 2111 0.0
> Ahg494502 jgi|Araly1|494502|fgenesh2_kg.8__318__AT5G44785.2
Length=1473
Score = 2111 bits (1143), Expect = 0.0
Identities = 1327/1414 (94%), Gaps = 19/1414 (1%)
Strand=Plus/Plus
Query 108 TAGTATGAAACAATGAATTTGATCTCAAGAACATTGACAAGAGCAGTGTCTTCGTCACTA 167
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 70 TAGTATGAAACAATGAATTTGATCTCAAGAACATTGACAAGAGTAGTGTCTTCGTCACTA 129
Query 168 TACCACTCAAAAGCAGCGAAGCTCCCCACTCAAAAATGGATAATCTCGCAGCAAATCCGT 227
|||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 130 TACCACTCAAGAGCAGCGAAACTCCCCACTCAAAAATGGGTAATCTCGCAGCAAATCCGC 189
Query 228 GTTTTCTCCGCCACAGTCATCAGCGGTGGAGGAAAGAAACCTCT-GGCAAAAGTATCTGT 286
|||||||||||||| |||||| | ||||||||| ||| ||| | |||||||| ||| ||
Sbjct 190 GTTTTCTCCGCCACCGTCATCGGAAGTGGAGGAAGGAAGCCT-TGGGCAAAAGCATCAGT 248
Query 287 GAAACCACCGCTAAATG-TAGCGACGGAGAAAGAATCGACTCCGCCAAAGAAAATTGAGT 345
||||||||||||||||| | ||| |||||||||||||||||| ||| |||| |||||||
Sbjct 249 GAAACCACCGCTAAATGCT-GCGGCGGAGAAAGAATCGACTCTGCCGAAGAGGATTGAGT 307
Query 346 ACAAACCGGAAATTTCAAACTGGATCAACCTAATCGGATTCGTTGAACAACCAGTTCAAT 405
|||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 308 ACAAGCCGGAAATTTCAAATTGGATCAACTTAATCGGATTCGTTGAACAACCAGTTCAAT 367
Query 406 TCGGTCCTTGCTCCGATGGAAAATTCTGGGCTGGAACAGTTATTTCTCAGCGTTCTGGTT 465
||||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||||
Sbjct 368 TCGGTCCTTGCTCCGATGGAAAATTCTGGGCAGGAACTGTAATTTCGCAGCGTTCTGGTT 427
Query 466 CAAAATCATCTAATTTCTGGATTCCGATTATATTCGAAGGAGATTTAGCTAAAATTGCAG 525
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 428 CAAAATCATCTAATTTCTGGATTCCGATAATATTCGAAGGAGATTTAGCTCAAATTGCAG 487
Query 526 TTCAACATGTAAAGAAAGAAGATCGGATTCATGTTTCCGGGAAGCTGTTTATTGATTCGC 585
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 488 TTCAACATGTAAAGAAAGAAGATCGGATTCATGTTTCTGGGAAGCTGTTTATTGATTCGC 547
Query 586 CTCCTCCAAATGTGACATATTCTCAATCCAATGTTCAGGTTATGGTTCAGAATCTTAACT 645
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 CTCCTCCAAATGTTACATATTCTCAATCCAATGTTCAGGTTATGGTTCAGAATCTTAACT 607
Query 646 TCGTACAAGCTGCTACTTCTACGACTAAGACGATCTCACCACCTGAAAAAGAAGTTACCA 705
|||||||||||| |||||| || ||||||| ||||||||||||||||||||||| | ||
Sbjct 608 TCGTACAAGCTGAAACTTCTCCGGCTAAGACCATCTCACCACCTGAAAAAGAAGTAATCA 667
Query 706 GCATCAAGAAAAAGCCCGCAAGATCCAAAAAGGTTAAAGTCATAGATGAAGAAACCTCTA 765
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 GCACCAAGAAAAAGCCCGCAAGATCCAAAAAGGTTAAAGTCATAGATGAAGAAACCTCTA 727
Query 766 ATTCTTGGAAGCATCTTATTGAAAATCCTAAAGAGTGGTTGGATCACCGTGGGAATAAAG 825
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 ATTCTTGGAAGCACCTTATTGAAAATCCTAAAGAGTGGTTGGATCACCGTGGGAATAAAG 787
Query 826 CTAACGGATTGGTAAAGCCAGGACATCCCGATTTCAAGATGAAGGTTGGTGGTTTGTCCC 885
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 788 CTAACGGATTGGTAAAGCCAGGACATCCTGATTTCAAGATGAAGGTGGGTGGTTTGTCTC 847
Query 886 TGTGGCTCAGCACAGCTCCTGATTGGGCTTTGCTAAAACTCGAAGAGCTTAAGTTTGATG 945
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 848 TGTGGCTCAGCACAGCTCCTGATTGGGCTTTGCTAAAACTCGAAGAGCTTGAGTTTGATG 907
Query 946 TCTTAGTCCCTAAAGGAAACATCAAACTGAATCAACTTAAAGATATAGGAGAGGAATCTT 1005
|||| ||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 908 TCTTTGTCCCTAAAGGAAACATCAAACTGAATCAACTT----A-A-AGGAGAGGAATCTT 961
Query 1006 GGAAGGATTTGGTTCAGAACCCAGACAAATGGTTAGACAACAGATCAGATAAGACAAACG 1065
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 962 GGAAGGATTTGGTTCAGAACCCAGATAAATGGTTAGACAACAGATTAGATAAGACAAACG 1021
Query 1066 TGAAATACCCTGACTTCAAGCATAAAGAGACTGGTGAAGCACTGTGGATGACCAATTCTC 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 TGAAATACCCTGACTTCAAGCATAAAGAGACTGGTGAAGCACTGTGGATGACCAATTCTC 1081
Query 1126 CTATTTGGGTACTGTCAAAGTTACCACCTCTAAAGAAGAACCAAGAAAGACCTTTCATGT 1185
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1082 CTATTTGGGTACTGTCAAAGTTACCACCTCTGAAGAAGAACCAAGAAAGACCTCTCATGT 1141
Query 1186 CTAATAAAGTCTCGCAGCTTGAGCTTGACGTTGAAGTACCTAAAGGAAATCTGAAACAGC 1245
| |||| |||||||||||||||||||||||||| || |||||| ||||||||||||||||
Sbjct 1142 CCAATACAGTCTCGCAGCTTGAGCTTGACGTTGTAGAACCTAATGGAAATCTGAAACAGC 1201
Query 1246 TTAAAAGAGAGGAAAT-TTGGAAGAACTTGGTTGAGAACCCCAGTAAATGGTGGGATAAC 1304
|||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1202 TTAAAAGAGAGGAA-TCTTGGAAGAACTTGGTTGAGAACCCGAGTAAATGGTGGGATAAC 1260
Query 1305 AGATTAGACAAGAGAAACCCTAAAGGCCCTGACTTTAAGCACAAGGAGACCGGTGAAGCA 1364
|||||||||||||||||||| |||| ||||||||| ||||| || ||||||||||||| |
Sbjct 1261 AGATTAGACAAGAGAAACCCGAAAGCCCCTGACTTCAAGCATAAAGAGACCGGTGAAGTA 1320
Query 1365 CTGTGGATAGGTGAT--T-CTCCGACTTGGGCGCTGTCAAAGTTACCACCTCTAAAGAAA 1421
||||||||| | || | ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1321 CTGTGGATAAATAATAATTCTCCGACTTGGGCACTGTCAAAGTTACCACCTCTAAAGAAG 1380
Query 1422 AACCAAGAAAGACCTGTCATGGCCTAAGCTT--CTCTAGCAGCCTTATGTTAATTTTGGC 1479
|||||||||||||||||||||||||| | || |||| ||||||||||||| ||||||||
Sbjct 1381 AACCAAGAAAGACCTGTCATGGCCTA-GTTTGTCTCTCGCAGCCTTATGTTGATTTTGGC 1439
Query 1480 C-CCCACTATGTAAAAAGGCCCTATGACTTTATT 1512
| ||||||||||||||||||| ||||||||||||
Sbjct 1440 CACCCACTATGTAAAAAGGCCGTATGACTTTATT 1473
Score = 200 bits (108), Expect = 3e-50
Identities = 167/195 (86%), Gaps = 5/195 (3%)
Strand=Plus/Plus
Query 994 GAGAGGAATCTTGGAAGGATTTGGTTCAGAACCCAGA-CAAATGGTTAGACAACAGATCA 1052
||||||||||||||||| | |||||| ||||||| || ||||||| || ||||||| |
Sbjct 1208 GAGAGGAATCTTGGAAGAACTTGGTTGAGAACCC-GAGTAAATGGTGGGATAACAGATTA 1266
Query 1053 GATAAGACAAACGTGAAATACCCTGACTTCAAGCATAAAGAGACTGGTGAAGCACTGTGG 1112
|| |||| |||| |||| |||||||||||||||||||||||| ||||||| |||||||
Sbjct 1267 GACAAGAGAAACCCGAAAGCCCCTGACTTCAAGCATAAAGAGACCGGTGAAGTACTGTGG 1326
Query 1113 AT---GACCAATTCTCCTATTTGGGTACTGTCAAAGTTACCACCTCTAAAGAAGAACCAA 1169
|| | |||||||| | ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1327 ATAAATAATAATTCTCCGACTTGGGCACTGTCAAAGTTACCACCTCTAAAGAAGAACCAA 1386
Query 1170 GAAAGACCTTTCATG 1184
||||||||| |||||
Sbjct 1387 GAAAGACCTGTCATG 1401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61630016410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5