BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44840.1
Length=1146
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948597 jgi|Araly1|948597|scaffold_800484.1 1757 0.0
Ahg326950 jgi|Araly1|326950|fgenesh1_pm.C_scaffold_6002170 172 4e-42
> Ahg948597 jgi|Araly1|948597|scaffold_800484.1
Length=1186
Score = 1757 bits (951), Expect = 0.0
Identities = 1084/1149 (94%), Gaps = 6/1149 (1%)
Strand=Plus/Plus
Query 1 ATGGAAATCATACTACGTGGTGTGTTCTTGTTGACTTTACTGCATTCTATTCTTGTAAAC 60
||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||
Sbjct 21 ATGGAAATCATACTACGTGGTGTATTCTTCTTGACTTTACTGCATTCTGTTCTTGTAAAC 80
Query 61 GGCCAAATCTATGATGTGCTTGAATTTGGTGCCGATGGAAATGGTATTACCGATGATTCA 120
||||||||||||||||||||| ||||||||||| | ||||| |||||||||||||||||
Sbjct 81 GGCCAAATCTATGATGTGCTTAAATTTGGTGCCAAGGGAAACGGTATTACCGATGATTCG 140
Query 121 AAGGCTTTTGTGAAAGCATGGAGCGCTATGTGTGGTAGTGGTGGGAATTCAAAAACATTC 180
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 141 AAGGCTTTTGTGACAGCATGGAAAGCTATGTGTGGTAGTGGTGGGAATTCAAAAACATTC 200
Query 181 ATTATTCCATCAAACAAAACATTTTTACTACAACCTCTTACT-TTCCAAGGCCCTTGTAA 239
||||||| |||||||||||||| |||||||||||||||| | |||||||||||||||||
Sbjct 201 CTTATTCCTTCAAACAAAACATTCTTACTACAACCTCTTA-TGTTCCAAGGCCCTTGTAA 259
Query 240 ATCTCCTTCCGTACAAGTTAAGTTTGACGGAAAGATTGTTGCACCTATAAATAAAGCAGC 299
|||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 260 ATCTCCTTCCGTACAAGTTAAGTTTGACGGAAAGATTGTTGCGCCTATCAACAAAGCAGC 319
Query 300 TTGGTCGGACTATAAGTTATTTAGATGGGTTAGTTTTAAGGAAATAATCGGTTTAACAGT 359
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 TTGGTCGGAAAATAAGCTATTTAGATGGGTTAGTTTTAAGGAAATAATCGGTTTAACAGT 379
Query 360 CAATGGTTCGGGAACAATTCATGGACGTGGCTCGTCTTTTTGGAAGCAATTGCATTTTCA 419
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 380 CACTGGTTCGGGAACAATTCATGGACGTGGTTCGTCTTTTTGGAAGCAATTGCATTTTAA 439
Query 420 AAGATGCAACGATCTCATGATAACTGGAATAACCTCATTCAACAGTCCAAAAAACCATAT 479
||| ||||| ||||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 440 AAGTTGCAATGATCTCAAGATAAGTGGAATAACCTCATTCAACAGTCCAAGAAACCATAT 499
Query 480 ATCGATTAGCGAATGCAAAAGAGTTAAAATAACGAAGATAAAACTCGTAGCACCCCACGA 539
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 500 ATCGATTAGCGAATGCAAAAGAGTTAAAATTACGAAGATAAAACTCGTAGCACCCCACGA 559
Query 540 TAGTCCTAACACTGATGGAATTAATATCTCA-GAATCAAGTGATGTCGATATATACGACA 598
|||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||
Sbjct 560 TAGTCCTAACACTGATGGAATTGATATCTCACG-ATCAAGTGATGTCGATATATACGACA 618
Query 599 CAGTTATTGGAACTGGAGATGATTGTGTAGCTATTAACAGCGGAAGTATGAATATCAATA 658
|| ||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 619 CAATTATTGGAACTGGCGATGATTGTGTAGCTATAAACAACGGAAGTATGAATATCAATA 678
Query 659 TCGCAAGGATGAATTGTGGACCTGGTCATGGAATAAGTGTGGGAAGTGTAGGAAGAGATG 718
|| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 679 TCACAAGGATGAATTGTGGACCTGGCCATGGAATAAGTGTGGGAAGTCTAGGAAGAGATG 738
Query 719 GAGAAGAATCTATAGTTGAGAATGTCCAAGTAACTAATTGCACTTTCATTAGGACGGATA 778
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 739 GAGAAGAATCTATAGTTGAGAATGTCCAAGTGACTAATTGCACTTTCTTTAGGACGGATA 798
Query 779 ATGGAGCTAGAATTAAGACATGGCCGAATGGAAAGGGATACGCAAAAAATATACTTTTT- 837
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 ATGGAGCTAGGATTAAGACATGGCCGAATGGAAAGGGATACGCAAAAAATATACTTTTTC 858
Query 838 AAGAGTCTTACATTTAGAGAAACCAAAAATCCGATAATAATCGACCAAAATTATGTTGAT 897
||| | ||||| || ||||||||||||||||| || |||||||||||||| ||||| |||
Sbjct 859 AAG-GCCTTACGTTCAGAGAAACCAAAAATCCAATTATAATCGACCAAAACTATGTCGAT 917
Query 898 AAGGGTCGCCTAGACGTGGAGGAATCAGCAGTGGCAATCAGTAACGTGACATTTACAGAT 957
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 918 AAGGGTCGCCTAGACGTGGAGGAATCAGCAGTGGCAATTAGTAACGTGACATTCACCGAT 977
Query 958 CTCCGAGGAACATCAAAACTCGATGAGATTATAAAGATAGATTGCAGCAAAGTCACATAT 1017
| || ||||| ||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 978 ATTCGTGGAACGTCACAAGTCGATGAGATTATAAAGATAGATTGCAGCAAAGTCACATAT 1037
Query 1018 TGCAAAGACATTGTTCTTGATAAAATCGATATTGCTACGGTCGATGGAAATAAGCCAATC 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1038 TGCAAAGACATTGTTCTTGATAAAATCGATATTGCTACGGTCGATGGAAATAAGCCAGTT 1097
Query 1078 GTTGAATGCAGTAACGTATATGGAAAGTCTATCAATGCTAACGAGGCCAATGGTTGTTTC 1137
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 GTTGAATGCAGTAACGTGTATGGAAAGTCTATCAATGCTAACGAGGCCAATGGTTGTTTC 1157
Query 1138 AAAACATAG 1146
|||||||||
Sbjct 1158 AAAACATAG 1166
> Ahg326950 jgi|Araly1|326950|fgenesh1_pm.C_scaffold_6002170
Length=1230
Score = 172 bits (93), Expect = 4e-42
Identities = 638/890 (72%), Gaps = 82/890 (9%)
Strand=Plus/Plus
Query 51 TCTTGTAAACGGCCAAATCTATGATGTGCTTGAATTTGGTGCCGATGGAAATGGT-ATTA 109
||||||||||||||||| ||| |||| || |||||||||| | ||| ||||| | |
Sbjct 120 TCTTGTAAACGGCCAAAACTACAATGTACTCAAATTTGGTGCTAAAGGAGATGGTGA-AA 178
Query 110 CCGATGATTCAAAGGCTTTTGTGA-AAGCATGGAGCGCTATGTGTGGTAGTGGTGGGAAT 168
||||||||||||| |||||| | | ||||||||| ||||| |||||| | | | ||
Sbjct 179 CCGATGATTCAAATGCTTTTAT-ACAAGCATGGAACGCTACATGTGGTGGAGAAGATAA- 236
Query 169 TCA-AAA-ACA-TTCATTATTCCATC-AAACAAAACATTTTTACTACAACCTCTT-ACTT 223
|| ||| ||| ||| ||||||| || | ||||||| ||| || |||||| || | |
Sbjct 237 -CATAAATACACTTC-TTATTCCCTCTGGA-AAAACATATTTGCTTCAACCTATTGA-GT 292
Query 224 TCCAAGGCCCTTGTAAATCTCCTTCCGTACAAGTTAAGTTTGACGGAAAGATTGTTGCAC 283
|| ||||||||||||||||| | ||| || || || |||| || || | ||||| ||||
Sbjct 293 TCAAAGGCCCTTGTAAATCTACGTCCATAAAAATTCAGTTGGATGGTATCATTGTCGCAC 352
Query 284 CTA-TAA-AT-AAAGCAGCTTGGTCGGACTATAAGTTAT-TTAGATG-GG-TTAG-TTTT 336
||| || || ||| | | ||||| || || || | | ||| || |||| ||||
Sbjct 353 CTAGCAACATCAAA--A-CATGGTCCAACCCCAA---ATCTCAAATGTGGATTAGTTTTT 406
Query 337 AAGGAAATAATCGGTTTAACAG-TCAATGGTTCGGGAACA-ATTCATGGACGTGGCTCGT 394
| || | || ||| | || ||||||| |||| | ||| |||| || || || |
Sbjct 407 CA-TCTGTATTTAGTCTAA-TGATCGATGGTTCTGGAA-AGATTGATGGTCGCGGTTCTT 463
Query 395 -CTTTTTGGAAGCAATTGCAT-TTTCA-AAGATGCAACGATCTCATGAT-AACTGGAATA 450
||||| ||| || | | ||| ||| | || ||| | |||| | || ||| || |||
Sbjct 464 CCTTTTGGGAGGC-ACTACATATTT-ACAA-ATGTGATAATCTTACAATAAAC-GGGATA 519
Query 451 ACCTC-ATTCAACAGTCCAAAAAAC-CATATATCGATTAGCGAATGCAAAAGA-GTTAAA 507
|| || ||| | ||||| |||||| |||||||| || | | ||| || | | || |
Sbjct 520 ACTTCGATT-GATAGTCC-AAAAACTCATATATCAATCAAAGGATG-TAATTATGCTACA 576
Query 508 ATAACGAAGATAAA-ACTCGTAGCACCCCACG-ATAGTCCTAACACTGATGGAATTAATA 565
||| |||| ||||| | | | ||||| | | | ||||| ||||| ||||| ||| |||
Sbjct 577 ATATCGAAAATAAATA-TTTTGGCACCTGA-GAAAAGTCCCAACACAGATGGGATTGATA 634
Query 566 TCTCAG--AATCAAGTGATGTCGATATATACGACAC-AGTTATTGGAACTGGAGATGATT 622
| || | || | | || || | |||| |||| | | ||| |||||| |||||||
Sbjct 635 --TAAGTTACTCGACTAATATCAAAATATCCGACTCTA-CAATTCAAACTGGGGATGATT 691
Query 623 GTGTAGCTATTAACAGCGGAAG-TATGAATATCAATATCGCA-AGGATGAATTGTGGACC 680
| |||| || ||| ||||| | || ||| || ||| || | || |||||||||||
Sbjct 692 GCATAGCAATCGACAATGGAAGTTCTG-GTATTAACATCACACA-AATTAATTGTGGACC 749
Query 681 TGGTCATGGAATAAGTGTGGGAAGTGTAGGAAGA-GATGGAGA-AGAAT-CT-ATAGTT- 735
|||||||||||||||||| |||||| ||||| | |||||| | | ||| | | ||||
Sbjct 750 TGGTCATGGAATAAGTGTAGGAAGTCTAGGA-GCTGATGGA-ACA-AATGCCGA-AGTTA 805
Query 736 GAGAATGTCCAAGTAACTAATTGCACTTTCATTAGGA-CGGAT-AATGGAGCTAGAATTA 793
| || ||| || || ||| |||| ||||| | | | | || || ||||||||||||||||
Sbjct 806 GTGA-TGTTCATGTGACTCATTGTACTTTTAAT-GAAACG-ATGAATGGAGCTAGAATTA 862
Query 794 AGACATGGCCGAATGGA-AAGGGATACGCAAAAAATATACTTTTTAAGAGTCTTACATTT 852
||||||||| | |||| |||| || |||| ||| ||| |||| ||| | | ||| |
Sbjct 863 AGACATGGCAGGGTGGACAAGGT-TATGCAAGAAACATAAGTTTTGAGAATATCACACTC 921
Query 853 AGAGAA-ACCAA-AAATCCGATAATAATCGACCAA-AATTATGTTGATAA 899
| || || || |||||| || || || |||||| ||| || |||||||
Sbjct 922 ATT-AACAC-AAGAAATCCAATTATCATTGACCAACAAT-ATATTGATAA 968
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42735789957
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5