BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G44850.1

Length=996
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg494496 jgi|Araly1|494496|fgenesh2_kg.8__312__AT5G44850.1          272    3e-72


> Ahg494496 jgi|Araly1|494496|fgenesh2_kg.8__312__AT5G44850.1
Length=894

 Score =  272 bits (147),  Expect = 3e-72
 Identities = 191/212 (90%), Gaps = 4/212 (2%)
 Strand=Plus/Plus

Query  577  CTTTTGCGTTGTAGCGCTATCAACTTCTCTCGACTTACAGAGTTAATAATTTGTCCGGAT  636
            ||| |||||| |||| ||||||||||||||||||||||||||||| |||| ||||| |||
Sbjct  517  CTTGTGCGTTATAGCACTATCAACTTCTCTCGACTTACAGAGTTAGTAATCTGTCCAGAT  576

Query  637  GAATCAGACTGGTTGGAACCACTCATGCTTTTACTTGGAAAATCTCCAAAGCTaaaaaaa  696
             ||||||||||| ||||||||||| | |||||||||||||| |||||||| || ||||| 
Sbjct  577  AAATCAGACTGGATGGAACCACTCCTACTTTTACTTGGAAATTCTCCAAAACTCAAAAAG  636

Query  697  CTTTCGGTTGATTA--T--GGACCAACCGAAAACCCCGAGGATCTCCCACTTTCATGGAA  752
            |||| |||||||||  |  ||||||||||||| ||||||||||||||||||| |||||||
Sbjct  637  CTTTTGGTTGATTATGTAGGGACCAACCGAAACCCCCGAGGATCTCCCACTTGCATGGAA  696

Query  753  CGAACCGAGTTCAGTTCCTGGTTGCTTGTCTT  784
            ||||||||||||||||||||||||||||||||
Sbjct  697  CGAACCGAGTTCAGTTCCTGGTTGCTTGTCTT  728


 Score =  250 bits (135),  Expect = 2e-65
 Identities = 166/181 (92%), Gaps = 1/181 (1%)
 Strand=Plus/Plus

Query  85   AAG-GCACCTGTGCTACACAGCTTGTGTATCAAACTTGGTTCACAATGTCCTGTTGATGT  143
            ||| ||||||||| || ||||||||||||||||||| ||| |||||||||||||| ||||
Sbjct  57   AAGAGCACCTGTGTTAGACAGCTTGTGTATCAAACTCGGTCCACAATGTCCTGTTAATGT  116

Query  144  TGAAGTCGGCAAATGGGTTGCAAAGGCCGTTGATCGCTTTGTGCGTAAGCTAAAGTTTAA  203
            ||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct  117  TGATGTCGGAAAATGGGTTGCAAAGGCGGTTGATCGTTTTGTGCGTAAGCTAAAGTTTAA  176

Query  204  GCTTCTCTGGTCCGCAGATCCAATCAGCTTACCTAAGAGCCTTTACACATGTGAAACGCT  263
            |||||||||||||||||||| |||||||||||||||||||||||| |||||  ||| |||
Sbjct  177  GCTTCTCTGGTCCGCAGATCTAATCAGCTTACCTAAGAGCCTTTATACATGCAAAATGCT  236

Query  264  A  264
            |
Sbjct  237  A  237


 Score =  159 bits (86),  Expect = 3e-38
 Identities = 104/113 (92%), Gaps = 0/113 (0%)
 Strand=Plus/Plus

Query  884  GAGCAACAATCTCCCTAAGGTCTGCATTCAACCTTGAACAGAAACAAAAGGTGATGAAGG  943
            ||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||| |||
Sbjct  782  GAGCAACAATCTCCCTAAGGTCTGCATTCAATCTTGAAGAGAAACAAAAGGTAATGGAGG  841

Query  944  AATTGGATTCAATTCCTAGAGTTTCCAAGTCATCTCAGCTTCTTCTCAAATGA  996
            |||| || || |||||||||||||| ||||||||||||||||||||||| |||
Sbjct  842  AATTAGAATCTATTCCTAGAGTTTCTAAGTCATCTCAGCTTCTTCTCAAGTGA  894


 Score =  128 bits (69),  Expect = 7e-29
 Identities = 82/88 (93%), Gaps = 2/88 (2%)
 Strand=Plus/Plus

Query  299  ATTTTCCTTCTTCTCCCGCGTGCCTCCCATCCCTTAAAAAGCTCAACCTAATCAATGTGG  358
            ||||||||||||||||| |  |||||||||||||||||||||||||||| ||||||||||
Sbjct  238  ATTTTCCTTCTTCTCCCAC--GCCTCCCATCCCTTAAAAAGCTCAACCTTATCAATGTGG  295

Query  359  TTTATAAAGACGATGCTTCTCTCATTAG  386
            | |||| |||||||||||||||||||||
Sbjct  296  TCTATACAGACGATGCTTCTCTCATTAG  323



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37017352407


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5