BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44860.1
Length=1355
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948595 jgi|Araly1|948595|scaffold_800482.1 1666 0.0
Ahg948591 jgi|Araly1|948591|scaffold_800478.1 1655 0.0
Ahg329571 jgi|Araly1|329571|fgenesh1_pm.C_scaffold_7001798 405 4e-112
> Ahg948595 jgi|Araly1|948595|scaffold_800482.1
Length=1010
Score = 1666 bits (902), Expect = 0.0
Identities = 974/1009 (97%), Gaps = 3/1009 (0%)
Strand=Plus/Plus
Query 141 ACAAACCCTAATCTCAGCCATGGATCTCGCTGCAGAAGAGCTTCAATTTCTCAACATTCA 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 ACAAACCCTAATCTCAGCCATGGATCTCGCTGCAGAAGAGCTTCAATTTCTCAACATTCA 61
Query 201 AGGCATATTACGTGAATCCACAACAATCCCCAAATTTTCCCCAAAAACCTTCTACCTCAT 260
||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 62 AGGTATACTACGTGAATCCACAACAATCCCCAAATTTTCCCCAAAAACCTTTTACCTCAT 121
Query 261 AACCCTAACCCTAATTTTCCCTCTCTCCTTCGCAATCCTCGCTCATTCCCTCTTTACCCA 320
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 122 AACCCTAACCCTAATTTTCCCTCTTTCCTTCGCAATCCTCGCTCATTCTCTCTTTACCCA 181
Query 321 ACCAATCTTAGCTCAGCTAGATGCAACTCCTCCTTCAGATCAATCTAAAACCAATCACGA 380
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 182 ACCAATCTTAGCTCAGCTTGATTCAACTCCTCCTTCAGATCAATCTAAAACCAATCACGA 241
Query 381 ATGGACCCTTCTTCTCATTTATCAATTCATCTACGTCATCTTCCTCTTCGCCTTCTCTCT 440
||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||
Sbjct 242 ATGGACCCTTCTTCTTGTTTATCAATTCATCTATGTTATCTTCCTCTTCGCCTTCTCTCT 301
Query 441 TCTCTCAACAGCCGCCGTCGTCTTCACCGTCGCTTCGCTTTACACGGGAAAGCCAGTTTC 500
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TCTCTCCACAGCCGCCGTCGTCTTCACCGTCGCTTCGCTTTACACGGGAAAGCCAGTTTC 361
Query 501 TTTCTCTTCAACAATGTCAGCGATTCCTCTGGTTTTGAAGCGTTTGTTCATTACCTTCCT 560
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 362 TTTCTCTTCCACAATGTCAGCGATTCCTCTAGTTTTGAAGCGTTTGTTCATTACCTTCCT 421
Query 561 TTGGGTTTCTTTAATGATGCTTGTGTACAACTCTGTCTTCTTGTTGTTTCTCGTTGTTTT 620
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 422 TTGGGTTTCTTTAATGATGCTTGTGTACAACTCTGTTTTCTTGTTGTTTCTTGTTGTTTT 481
Query 621 GATCGTAGCTATCGATTTACAAAGCGTGATTCTCGCTGTCTTCTCGATGGTTGTGAT-TT 679
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 482 GATCGTAGCTATCGATTTACAAAGCGTGATTCTCGCTGTTTTCTCGATGGTTGTGATCTT 541
Query 680 TCGTTCTGTTTTTGGGTGTTCATGTTTACATGACTGCTTGGTGGCATTTAGCTAGTGTAG 739
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 542 T-GTTCTGTTTTTGGGTGTTCATGTTTATATGACTGCTTGGTGGCATTTAGCTAGTGTTG 600
Query 740 TCTCTGTTCTTGAACCGATTTACGGTATCGCCGCGATGAAGAAGAGTTACGAGTTGCTTA 799
||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 601 TCTCTGTTCTTGAACCGATTTACGGGATTGCCGCGATGAAGAAGAGTTATGAGTTGCTTA 660
Query 800 ATGGAAGAACTAATATGGCGTGTTCGATGGTTTTTATGTATCTTGCTCTTTGTGGAATCA 859
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAGGGAGAACTAATATGGCGTGTTCGATGGTTTTTATGTATCTTGCTCTTTGTGGAATCA 720
Query 860 CTGCTGGTGTTTTCGGTGGTGTTGTGGTTCATGGAGGTGATGATTTCGGGTTGTTTACGA 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTGCTGGTGTTTTCGGTGGTGTTGTGGTTCATGGAGGTGATGATTTCGGGTTGTTTACGA 780
Query 920 AGATTGTTGTTGGTGGTTTCTTGGTTGGGATTCTAGTGATTGTGAATCTAGTTGGGCTGC 979
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 781 AGATTGTTGTTGGTGGTTTCTTGGTTGGGATTCTAGTGATTGTGAATCTAGTGGGGTTGC 840
Query 980 TTGTGCAGAGTGTGTTTTACTATGTTTGTAAGAGTTTTCATCATCAGCCGATTGATAAAT 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TTGTGCAGAGTGTGTTTTACTATGTTTGTAAGAGTTTTCATCATCAGCCGATTGATAAAT 900
Query 1040 CTGCGTTGCACGATCATCTTGGTGGATATCTTGGTGACTATGTGCCGTTAAAGAGCAGTA 1099
| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |
Sbjct 901 CCGCGTTGCACGATCATCTTGGTGGGTATCTTGGTGATTATGTGCCTTTAAAGAGCAGCA 960
Query 1100 TTCAGATGGAGAACTTTGATATTTAATCGTTAAATGGATTGGATGATGA 1148
||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 961 TTCAGATGGAGAACTTTGATATTTAATCGTTAA-TGGATCGGATGATGA 1008
> Ahg948591 jgi|Araly1|948591|scaffold_800478.1
Length=1010
Score = 1655 bits (896), Expect = 0.0
Identities = 972/1009 (96%), Gaps = 3/1009 (0%)
Strand=Plus/Plus
Query 141 ACAAACCCTAATCTCAGCCATGGATCTCGCTGCAGAAGAGCTTCAATTTCTCAACATTCA 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 ACAAACCCTAATCTCAGCCATGGATCTCGCTGCAGAAGAGCTTCAATTTCTCAACATTCA 61
Query 201 AGGCATATTACGTGAATCCACAACAATCCCCAAATTTTCCCCAAAAACCTTCTACCTCAT 260
||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 62 AGGTATACTACGTGAATCCACAACAATCCCCAAATTTTCCCCAAAAACCTTTTACCTCAT 121
Query 261 AACCCTAACCCTAATTTTCCCTCTCTCCTTCGCAATCCTCGCTCATTCCCTCTTTACCCA 320
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 122 AACCCTAACCCTAATTTTCCCTCTTTCCTTCGCAATCCTCGCTCATTCTCTCTTTACCCA 181
Query 321 ACCAATCTTAGCTCAGCTAGATGCAACTCCTCCTTCAGATCAATCTAAAACCAATCACGA 380
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct 182 ACCAATCTTAGCTCAGCTTGATTCAACTCCTCCTTCAGATCAATCTAAAACCAATCATGA 241
Query 381 ATGGACCCTTCTTCTCATTTATCAATTCATCTACGTCATCTTCCTCTTCGCCTTCTCTCT 440
||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||
Sbjct 242 ATGGACCCTTCTTCTTGTTTATCAATTCATCTATGTTATCTTCCTCTTCGCCTTCTCTCT 301
Query 441 TCTCTCAACAGCCGCCGTCGTCTTCACCGTCGCTTCGCTTTACACGGGAAAGCCAGTTTC 500
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 302 TCTCTCCACAGCCGCCGTCGTCTTCACCGTCGCTTCGCTTTACACGGGAAAGCCTGTTTC 361
Query 501 TTTCTCTTCAACAATGTCAGCGATTCCTCTGGTTTTGAAGCGTTTGTTCATTACCTTCCT 560
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 362 TTTCTCTTCCACAATGTCAGCGATTCCTCTAGTTTTGAAGCGTTTGTTCATTACCTTCCT 421
Query 561 TTGGGTTTCTTTAATGATGCTTGTGTACAACTCTGTCTTCTTGTTGTTTCTCGTTGTTTT 620
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 422 TTGGGTTTCTTTAATGATGCTTGTGTACAACTCTGTTTTCTTGTTGTTTCTTGTTGTTTT 481
Query 621 GATCGTAGCTATCGATTTACAAAGCGTGATTCTCGCTGTCTTCTCGATGGTTGTGAT-TT 679
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 482 GATCGTAGCTATCGATTTACAAAGCGTGATTCTCGCTGTTTTCTCGATGGTTGTGATCTT 541
Query 680 TCGTTCTGTTTTTGGGTGTTCATGTTTACATGACTGCTTGGTGGCATTTAGCTAGTGTAG 739
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 542 T-GTTCTGTTTTTGGGTGTTCATGTTTATATGACTGCTTGGTGGCATTTAGCTAGTGTTG 600
Query 740 TCTCTGTTCTTGAACCGATTTACGGTATCGCCGCGATGAAGAAGAGTTACGAGTTGCTTA 799
||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 601 TCTCTGTTCTTGAACCGATTTACGGGATTGCCGCGATGAAGAAGAGTTATGAGTTGCTTA 660
Query 800 ATGGAAGAACTAATATGGCGTGTTCGATGGTTTTTATGTATCTTGCTCTTTGTGGAATCA 859
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAGGGAGAACTAATATGGCGTGTTCGATGGTTTTTATGTATCTTGCTCTTTGTGGAATCA 720
Query 860 CTGCTGGTGTTTTCGGTGGTGTTGTGGTTCATGGAGGTGATGATTTCGGGTTGTTTACGA 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTGCTGGTGTTTTCGGTGGTGTTGTGGTTCATGGAGGTGATGATTTCGGGTTGTTTACGA 780
Query 920 AGATTGTTGTTGGTGGTTTCTTGGTTGGGATTCTAGTGATTGTGAATCTAGTTGGGCTGC 979
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 781 AGATTGTTGTTGGTGGTTTCTTGGTTGGGATTCTAGTGATTGTGAATCTAGTGGGGTTGC 840
Query 980 TTGTGCAGAGTGTGTTTTACTATGTTTGTAAGAGTTTTCATCATCAGCCGATTGATAAAT 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TTGTGCAGAGTGTGTTTTACTATGTTTGTAAGAGTTTTCATCATCAGCCGATTGATAAAT 900
Query 1040 CTGCGTTGCACGATCATCTTGGTGGATATCTTGGTGACTATGTGCCGTTAAAGAGCAGTA 1099
| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |
Sbjct 901 CCGCGTTGCACGATCATCTTGGTGGGTATCTTGGTGATTATGTGCCTTTAAAGAGCAGCA 960
Query 1100 TTCAGATGGAGAACTTTGATATTTAATCGTTAAATGGATTGGATGATGA 1148
||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 961 TTCAGATGGAGAACTTTGATATTTAATCGTTAA-TGGATCGGATGATGA 1008
> Ahg329571 jgi|Araly1|329571|fgenesh1_pm.C_scaffold_7001798
Length=675
Score = 405 bits (219), Expect = 4e-112
Identities = 375/450 (83%), Gaps = 12/450 (3%)
Strand=Plus/Plus
Query 160 ATGGATCTCGCTGCAGAAGAGCTTCAATTTCTCAACATTCA-AGGCATAT-TACGTGAAT 217
|||||||| || |||| ||||||||||||||||||| | ||| || | |||||||||
Sbjct 1 ATGGATCTTGCCCCAGAGGAGCTTCAATTTCTCAACA-AAAGAGGAAT-TCTACGTGAAT 58
Query 218 CCACAACAATCCCCA-AATTTTC-CCCAAAAACCTTCTACCTCATAACCCTAACCCTAAT 275
| ||| |||| |||| ||| ||| ||| |||||||| |||||||||||||||||||||||
Sbjct 59 CAACATCAAT-CCCACAATATTCTCCC-AAAACCTTTTACCTCATAACCCTAACCCTAAT 116
Query 276 TTTCCCTCTCTCCTTCGCAATCCTCGCTCATTCCCTCTTTACCCAACCAATCTTAGCTCA 335
|||||||||||||||||||||||| || ||||| ||||| || |||||||||||||||||
Sbjct 117 TTTCCCTCTCTCCTTCGCAATCCTAGCACATTCTCTCTTCACACAACCAATCTTAGCTCA 176
Query 336 GCTAGATGCA-ACTCCTCCTTCAGATCAATCTAAAACCAATCACGAATGGACCCTTCTTC 394
| | ||| | || || | | |||||| || ||||||| || ||||||||| | || |
Sbjct 177 GATCGATACTTAC-CCACAAACCGATCAAGCTCAAACCAAACATGAATGGACCATCCTCC 235
Query 395 TCATTTATC-AATTCATCTACGTCATCTTCCTCTTCGCCTTCTCTCTTCTCTCAACAGCC 453
|| ||| || |||||| |||| | |||||||| || |||||||||||||||||||| |||
Sbjct 236 TCCTTT-TCCAATTCAGCTACTTGATCTTCCTTTTTGCCTTCTCTCTTCTCTCAACCGCC 294
Query 454 GCCGTCGTCTTCACCGTCGCTTCGCTTTACACGGGAAAGCCAGTTTCTTTCTCTTCAACA 513
|| || ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 295 GCTGTTGTCTTCACCGTCGCTTCTCTTTACACCGGAAAGCCAGTTTCTTTCTCATCAACA 354
Query 514 ATGTCAGCGATTCCTCTGGTTTTGAAGCGTTTGTTCATTACCTTCCTTTGGGTTTCTTTA 573
||||||||||| ||||| || | || | |||||||| || ||||| ||||| ||| |
Sbjct 355 ATGTCAGCGATACCTCTCGTCCTCAAAAGATTGTTCATCACTTTCCTCTGGGTCTCTCTC 414
Query 574 ATGATGCTTGTGTACAACTCTGTCTTCTTG 603
||||||||| ||||||| | || ||||||
Sbjct 415 TTGATGCTTGCGTACAACACCGTGTTCTTG 444
Score = 220 bits (119), Expect = 2e-56
Identities = 172/197 (87%), Gaps = 6/197 (3%)
Strand=Plus/Plus
Query 930 TGGTGGTTTCTTGGTTGG-GATTCTAGTGATTGTGAATCTAGTTGGGCTGCTTGTGCAGA 988
|||||| ||||||||||| | |||| ||||| ||||||||| |||| ||||||||||||
Sbjct 480 TGGTGGATTCTTGGTTGGTG-TTCTTGTGATAGTGAATCTAATTGGATTGCTTGTGCAGA 538
Query 989 GTGTGTTTTACTATGTTTGTAAGAGTTTTCATCATCAGC-CGATTGATAAATCTGCGTTG 1047
||||||||||||||||||| |||||||||||||||||| | ||||||||||| || |||
Sbjct 539 GTGTGTTTTACTATGTTTGCAAGAGTTTTCATCATCAGGAC-ATTGATAAATCCGCTTTG 597
Query 1048 CACGATCATCTTGGTGGATATCTTGGTGACTATGTGCCG-TTAAAGAGCAGTATTCAGAT 1106
||||||||||| ||||| ||||||||||| || ||||| |||| ||||| ||||| ||
Sbjct 598 CACGATCATCTCGGTGGGTATCTTGGTGAATACGTGCCTCTTAA-GAGCAACATTCAAAT 656
Query 1107 GGAGAACTTTGATATTT 1123
|||||||||||| ||||
Sbjct 657 GGAGAACTTTGAGATTT 673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50703479610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5