BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44870.1
Length=3513
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330904 jgi|Araly1|330904|fgenesh1_pm.C_scaffold_8000247 3790 0.0
Ahg915685 jgi|Araly1|915685|Al_scaffold_0008_436 2093 0.0
> Ahg330904 jgi|Araly1|330904|fgenesh1_pm.C_scaffold_8000247
Length=3471
Score = 3790 bits (2052), Expect = 0.0
Identities = 3039/3498 (87%), Gaps = 138/3498 (4%)
Strand=Plus/Plus
Query 10 TCTTCCGAAATAC-TCCCGGAGTCGTGGCAAGTGTTCATCAATTTCCGAGGAGCAGATTT 68
||||||||||||| |||| |||||||||||||||||||||||||| | |||||||| ||
Sbjct 22 TCTTCCGAAATACTTCCC-AAGTCGTGGCAAGTGTTCATCAATTTCAGGGGAGCAGAATT 80
Query 69 GCGCAACGGTTTCATCAGCCATCTGGCGGGAG-CTTTGAC-CTCAGCTGGAATCACATAC 126
|||||| ||||||| |||||||||| ||||| ||| | | || ||| || |||| ||||
Sbjct 81 GCGCAATAGTTTCATTAGCCATCTGGAGGGAGCCTTAG-CGCT-AGCCGGGATCAAATAC 138
Query 127 TACATCGACACGGAAGAAGTCCCGAGCGAAGATCTCACTGTCCTTTTCAAGAGGATAGAG 186
|| ||||||||| |||| ||||||||||||||||| | |||||||||| ||||||| |||
Sbjct 139 TATATCGACACGAAAGAGGTCCCGAGCGAAGATCTTAGTGTCCTTTTCGAGAGGATCGAG 198
Query 187 GAATCGGAAATCGCACTGTCCATCTTCTCGAGCAATTATGCTGAGTCAAAATGGTGTTTG 246
|||| ||||| ||||||||||||||||||||||| || ||||| ||||| |||||||||
Sbjct 199 CAATCTGAAATTGCACTGTCCATCTTCTCGAGCAAGTACGCTGAATCAAACTGGTGTTTG 258
Query 247 GACGAGCTCGTGAAGATCATGGAACAAGTAAAGAAAGGAAAGCTCAGAATCATGCCC-GT 305
|||||||| ||||| |||||||||||||| ||||||| ||| ||| ||||||| ||| ||
Sbjct 259 GACGAGCTGGTGAAAATCATGGAACAAGTCAAGAAAGAAAAACTCCGAATCAT-CCCAGT 317
Query 306 CTTCTTCAACGTGAAGCCAGAGGAGGTGAGAGAGCAGAACGGAGAGTTCGGACTTAAGCT 365
|||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 318 CTTCTTTAACGTGAAGCCTGAGGAGGTTAGAGAGCAGAAAGGAGAGTTCGGACTTAAGCT 377
Query 366 TTACGGAGAAGGTAAAAGCAAACGACCCAACATACCTAATTGGGAGAACGCTTTGCGGTC 425
||||||||||||||||| ||||||||||| |||||||||||||| |||||| ||| |||
Sbjct 378 ATACGGAGAAGGTAAAAGGAAACGACCCAATATACCTAATTGGGAAAACGCTCTGCAGTC 437
Query 426 TGTCCCAAGCAAGATAGGCTTGAATTTGGCGAATTTTAGAAACGAGAAGGAACTCCTTGA 485
||| |||||||||||||||||||||||| |||||| ||| ||||||| ||| ||| ||||
Sbjct 438 TGTTCCAAGCAAGATAGGCTTGAATTTGTCGAATTATAGGAACGAGAGGGAGCTCGTTGA 497
Query 486 CAAGATCA-TTGACTCCATCAAAAAAGTACTTGCCCGAATTACAC-GAGCAAGCAGAGTA 543
||||| | ||||||| ||||||| ||| ||||||| |||| ||| | | ||||||||||
Sbjct 498 AAAGAT-AGTTGACTCGATCAAAAGAGTGCTTGCCCTAATTCCACTG-GGAAGCAGAGTA 555
Query 544 GCAGAATCTCTAAACGGGATCTCAAAAGACTCAGAGGCAAAGAATGTAGACACATTTTCG 603
|||| | ||| |||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 556 ACAGAGTATCTGAACGGGATCTCAAAAGCCTCAGGGGCAAAGAATGTAGACAGATTTTCG 615
Query 604 CCAAACTCC-AGTGATTTTCCATCTACTTCCATTG----A-C-G--A-CGAC-CT--C-A 649
| || |||| | ||| |||| || | | ||| ||| | | | | | || | | |
Sbjct 616 CTAAGCTCCTA-TGAGTTTCAATGTTCCTCCCTTGATATATCAGTCACCAACGATGACAA 674
Query 650 --GTATCAACT-CGCCTCAGTACCAAGCCACAATTCCCCCCG-CAAGC-AGGGAAG-GT- 702
| ||| ||| || ||||| || |||||| ||| | | | || ||| | | ||
Sbjct 675 TGGAATC-ACTCCGTTTCAGTGCCCAGCCACGATT-GACGAGTTATGCAAGGTAGGAGTA 732
Query 703 GAACGTCTCAA-CACGATCTCTACTGTAAGTTCAACTGG---TAG-T-AT-T-G-AACAT 753
|||| |||||| | |||||||||||||||||||||||| ||| | || | | |||||
Sbjct 733 GAACATCTCAATGA-GATCTCTACTGTAAGTTCAACTGGTAATAGTTCATCTAGAAACAT 791
Query 754 -------CCTCCACCCAACTACGGAATAGAACCACGCCTTAAGGAGA-TGGAAGAAAAGT 805
|| |||||| |||||||||||||||||||||||||||| | |||||||||||
Sbjct 792 CGAACAGCCGCCACCCCACTACGGAATAGAACCACGCCTTAAGGA-ACTGGAAGAAAAGA 850
Query 806 TAGATTTTGATAGCCTCGAAACTAAAACTGTTGGAATTGTTGGGATGCCTGGGATTGGTA 865
|| | |||||| || |||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 851 TACAATTTGATTGCATCGAAACTAAAATTGTTGGAATTGTTGGGATGCCTGGAATTGGTA 910
Query 866 AAACCACTCTTGCAGAAACGTTGTATAGAAAGTGGGAACACAAGTTTGAGAGGAGTATGT 925
||||||||||||| ||||| ||||||||||||||| |||||| |||| ||||||| | ||
Sbjct 911 AAACCACTCTTGCGGAAACATTGTATAGAAAGTGGAAACACAGGTTTAAGAGGAGCAAGT 970
Query 926 TTTTCCCAGATGCCAGTAAGATGGCGAATGAACACGGAATGTGTTGGCTGCAGAAGAGAT 985
|| ||||| ||| |||| | | || || | | || | | | | | |||| |||||||
Sbjct 971 TTATCCCAAATGTCAGT-A-A-GGAGAGT-CA-AC-G-A-G-GAT---TGCAAAAGAGAT 1018
Query 986 TATTGGAAGAGCTGTTGAAGGATACTAATCT-CAACATAGGATATACA-ACGAATGAACA 1043
| |||| ||||||||||| ||||| | || | ||| | ||||||| || | |||||||||
Sbjct 1019 TGTTGGTAGAGCTGTTGATGGATATTCAT-TACAAGACAGGATATTCAGA-GAATGAACA 1076
Query 1044 TGAGTTTTGTAAGGATGTTCTTCTCCTAAAGAAAGTTTTTCTTGTCATAGATAATGTTAG 1103
||||||||||||||||| |||||||| ||||||||||||| |||| |||||| |||||||
Sbjct 1077 TGAGTTTTGTAAGGATGCTCTTCTCCAAAAGAAAGTTTTTGTTGTTATAGATGATGTTAG 1136
Query 1104 TAGCGAGGAACAGATCGAAACTCTTTTTGGTAAATGGAATTGGATTAAAAATGGAAGCAA 1163
|||| ||||||||||| |||||||||||||| ||||| ||||||| ||||| || |||||
Sbjct 1137 TAGCAAGGAACAGATCAAAACTCTTTTTGGTCAATGGGATTGGATCAAAAAAGGTAGCAA 1196
Query 1164 GATTGTTATTACGTCAAGTGATGAGTCAATGCTCAAGGGTTTCGTTAAAGATACTTATGT 1223
|||||||||||| ||||||||||||||| ||||||||| | ||| | |||||||||||
Sbjct 1197 GATTGTTATTACATCAAGTGATGAGTCACTGCTCAAGGAACTGGTTGACGATACTTATGT 1256
Query 1224 AGTCCCAAGTTTGAACAGCAGA-GACAGTCTACTGTGGTTTACTAATCATGCATTTGGTT 1282
|||||| || |||||||||| | || ||| ||||||||||||| ||||| || |||||||
Sbjct 1257 AGTCCCGAGGTTGAACAGCACAGGA-AGTTTACTGTGGTTTACCAATCACGCCTTTGGTT 1315
Query 1283 TGGATGATGCCCAGGGAAACTTGGTAAAGTTGTCCAAACACTTTCTGAATTATGCCAAAG 1342
||||| ||||| | ||||| || |||||| |||||| |||||||||||||||||||||||
Sbjct 1316 TGGATCATGCCGAAGGAAATTTCGTAAAGCTGTCCAGACACTTTCTGAATTATGCCAAAG 1375
Query 1343 GCAACCCACTAGCCCTCGGAGCTTTTGGTGTAGAACTTTGTGGGAAAGACAAGGCTGATT 1402
| |||||||||| |||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1376 GAAACCCACTAGTCCTCAGAGCTTTTGGTGTAGAACTTCGTGGGAAAGACAAGGCTTATT 1435
Query 1403 GGGAAAAGAGAATAAAAACATTGACACTAATTTCCAATAAGATGATCCAAGATGTCTTGA 1462
||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1436 GGGAACAGAGAATTAAAACATTGAAACTAATTTCCAATAAGATGATCCAAGATGTCTTGA 1495
Query 1463 GAAGAAGGTATGATGAACTCACAGAGAGGCAGAAAGATATTTTTCTTGACGTCGCATGTT 1522
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1496 GAAGAAGGTATGATGAACTCACAGAGAGGCAGAAAGATATTTTTCTTGACATTGCATGTT 1555
Query 1523 TCTTCAAATCAGAGAATGAAAGTTATGTACGACACGTGGTGAATTCATGTGATTCTGAGT 1582
||||| |||||||||||| |||||||||| | | |||| |||||| || | | |
Sbjct 1556 TCTTCGAATCAGAGAATGCAAGTTATGTAAGGTGCCTGGTAAATTCAAGT-A---T---T 1608
Query 1583 CTACTAAGAGTTGGGATGAAATAACAGATCTCAAAGGA-AAGTTTCTTGTCAATATTTCT 1641
| | ||||||||||| ||||||| || || |||||||| ||||||||||||
Sbjct 1609 C--C---------GGATGAAATAAGAGATCTCCAA-GACAAGTTTCTCGTCAATATTTCT 1656
Query 1642 GGTGGTCGAGTTGAGATGCATGATATACTATGCACATTCGCCAAGGAACTTGCTTCACAA 1701
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1657 TGTGGTCGATTTGAGATGCATGATATATTATGCACATTCGCCAAGGAACTTGCTTCACAA 1716
Query 1702 GCATTGACTGAAGAT-ACAAGGGTTCATCTCAGGCTGTGGAACTATCAAGATATCATGTG 1760
||||||||||||| | |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1717 GCATTGACTGAAG-TCACAAGGGTTCATCTCAGGCTGTGGAAATATCAAGATATCATTTG 1775
Query 1761 GTTTCTCAACAATGAATTGGAAATGGAAAATGTCAGAGGTATTTTCTTAGACATGTCTAA 1820
||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1776 GTTGCTCAACAATAAATTGGAAATGGAAAATGTGAGAGGTATTTTCTTAGACATGTCTGA 1835
Query 1821 AGTTCCGGAGGAAATGACATTTGATGGTAACATCTTTAGCAATATGTGCAATCTTCGATA 1880
||||||||||||||||| |||||||| ||| |||||| | |||||||||| |||||||
Sbjct 1836 AGTTCCGGAGGAAATGATATTTGATGCTAAAATCTTT--C-GTATGTGCAATATTCGATA 1892
Query 1881 TCTCAAAATATACAGTTCTGTTTGCCATAAGGAAGGCGAAGGTATCTTCAAATTTGACAC 1940
|||||||||||||| |||||| | || ||||||||||||||||||||||||||||||||
Sbjct 1893 TCTCAAAATATACAATTCTGTCTACCCTAAGGAAGGCGAAGGTATCTTCAAATTTGACAG 1952
Query 1941 AGTTAGGGAAATT-CAGTTACCATTAGACAAGGTACGCTATCTCCACTGGATGAAATATC 1999
| |||||| | || |||||||||||| | |||||| |||||||||||||||| |||||||
Sbjct 1953 ATTTAGGG-AGTTCCAGTTACCATTAAATAAGGTAAGCTATCTCCACTGGATAAAATATC 2011
Query 2000 CATGGGAGAAACTTCCATCAGACTTCAACCCGGAGAATCTCGTTGATCTTGAACTGCCTT 2059
||| ||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 2012 CATTGGATAAACTTCCATCAGACTTCAACCCGGAGAATCTTGTTAATCTTGAACTGCCTT 2071
Query 2060 ATAGCTCCATTAAGAAAGTTTGGGAGGGTGTTAAGGATACCCCGATACTAAAGTGGGCCA 2119
|||||||||||||| |||||||||||||||||||||| ||||| | ||||||||||||||
Sbjct 2072 ATAGCTCCATTAAGCAAGTTTGGGAGGGTGTTAAGGAAACCCCAAAACTAAAGTGGGCCA 2131
Query 2120 ATCTAAGCTATTCAAGTAAGTTGACTAACCTTTTAGGGTTGTCAAATGCTAAAAATCTTG 2179
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2132 ATCTCAGCTATTCAAGTAAGTTGACTAACCTTTTAGGGTTGTCAAATGCTAAAAATCTTG 2191
Query 2180 AAAGATTGAATCTTGAAGGTTGCACAAGTTTGCTTAAACTGCCCCAAGAGATGGAGAACA 2239
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2192 AAAGATTGAATCTTGAAGGTTGCACAAGTTTGCTTAAACTGCCCAAAGAGATGGAGAACA 2251
Query 2240 TGAAAAGTCTTGTCTTCCTGAACATGAGACGTTGCACTAGTCTCACATGTCTTCAAAGTA 2299
|| |||||||||| || || ||||||||| |||||| |||||||||| |||||| || |
Sbjct 2252 TGGAAAGTCTTGTGTTTCTCAACATGAGAGGTTGCAAGAGTCTCACATTTCTTCATAGGA 2311
Query 2300 TTAAAGTGAGCTCTCTGAA-AATTCTCATACTCAGTGACTGCTCAAAACTTGAGGAATTT 2358
| || |||||||||| || ||| ||||||||||||||||||||||||||||||||||||
Sbjct 2312 TGAATTTGAGCTCTCT-AACAATCCTCATACTCAGTGACTGCTCAAAACTTGAGGAATTT 2370
Query 2359 GAGGTGATTTCGGAAAATCTGGAAGAATTATATTTAGATGGAACTGCAATAAAGGGACTT 2418
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2371 GAGGTGATTTCGGAAAATCTGGAAGCGTTATATTTAGATGGAACTGCAATAAAGGGACTT 2430
Query 2419 CCTCCAGCGG-CCGGGGATCTGACGAGACTTGTCGTCTTAAATATGGAAGGCTGTACAGA 2477
|||||| | | ||||| |||||| |||||||| | | || |||||| |||| ||||||||
Sbjct 2431 CCTCCAACCGTCCGGG-ATCTGAAGAGACTTGCCATATTGAATATGAAAGGTTGTACAGA 2489
Query 2478 ACTGGAGAGTCTTCCCAAACGTCTTGGAAAACAGAAAGCTCTTCAAGAACTGGTACTCTC 2537
||||||||||||||| || ||||||||||||| ||||||||| ||||||| |||||||
Sbjct 2490 ACTGGAGAGTCTTCCTGAATGTCTTGGAAAACAAAAAGCTCTTGAAGAACTCATACTCTC 2549
Query 2538 TGGAT-GTTCAAAGCTCGAGAGCGTTCCAACGGAC-GTAAAAGACATGAAACA-TCTACG 2594
| || |||||||||| ||||| ||||||| || | |||||| |||||||| | | ||||
Sbjct 2550 TA-ATTGTTCAAAGCTTGAGAGTGTTCCAAAGG-CTGTAAAAAACATGAAAAAAT-TACG 2606
Query 2595 GCTCTTATTGCTTGACGGCACAAGAATCAGAA-AGATCCCGAAGATAAAGTCGCTAAAGT 2653
| ||||||||||||| ||||||||||||| || | |||||||||||||| |||||| ||
Sbjct 2607 GATCTTATTGCTTGATGGCACAAGAATCA-AAGATATCCCGAAGATAAACTCGCTAGAGC 2665
Query 2654 GTTTGTGCTTAAGTAGAAATATTGCAATGGTCAATCTACAAGATAATCTCAAAGATTTCT 2713
|||||| |||||||||||||||||||||| || |||| ||||||| ||||| | ||||
Sbjct 2666 GTTTGTCCTTAAGTAGAAATATTGCAATGATCCATCTGCAAGATAGTCTCAGTGGGTTCT 2725
Query 2714 CTAATCTGAAATGTCTTGTCATGAAGAACTGCGAGAATCTCAGATATCTTCCTTCGCTTC 2773
|||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2726 CTAACCTGAAATGTGTTGTCATGAAGAACTGCGAGAATCTCAGATATCTTCCATCGCTTC 2785
Query 2774 CAAAATGTCTTGAGTACCTAAACGTATATGGTTGTGAAAGACTAGAATCAGTTGAGAATC 2833
|| || ||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2786 CACGATCTCTTGAGTATCTAAACGTATATGGTTGTGAAAGACTAGAAACAGTTGAGAATC 2845
Query 2834 CACTGGT-TG-CTGATAGGTTAACGTTATTCCTTGATAGATCT-GAGGA-ATTACGTTCC 2889
||||||| | | | | |||| | ||| | | || | || ||| | || ||||||
Sbjct 2846 CACTGGTCTTTC-G-TGGGTT--CTTTAATG-TA-ATTCAGCTTGAGAAGATC-CGTTCC 2898
Query 2890 ACTTTCTTGTTCACTAATTGCCACAATCTGTTTCAAGATGCAAAGGACTCAATCTCAACC 2949
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||
Sbjct 2899 ACTTTCTTGTTCACTAATTGCAACAATCTGTTTCAAGATGCAAAGGAGTCAATCTCATCC 2958
Query 2950 TACGCGAAATGGAAATGCCACCGACTTGCAGTTGAATGCTACGAACAGGACATAGTTTCT 3009
||||| ||||||||||||||| |||||||| |||| |||||| || || |||||||||
Sbjct 2959 TACGCAAAATGGAAATGCCACAGACTTGCACTTGACTGCTACCAATTGGGCATAGTTTCA 3018
Query 3010 GGAGCTTTTTTCAACACTTGCTATCCTGGATATATAGTCCCTTCGTGGTTCGA-TCACCA 3068
||||||||||||||||||||||||||||||| ||||||||||||||||||| | | ||||
Sbjct 3019 GGAGCTTTTTTCAACACTTGCTATCCTGGATTTATAGTCCCTTCGTGGTTCCACT-ACCA 3077
Query 3069 AGCAGTTGGATCAGTCTTAGAGCCAAGGCTGGAACCACATTGGTATAACACTATGCTTT- 3127
|||||||||||||||||| |||||||||||| || ||||||||| ||||| ||||||||
Sbjct 3078 AGCAGTTGGATCAGTCTTTGAGCCAAGGCTGAAATCACATTGGTGTAACAATATGCTTTA 3137
Query 3128 CTGGGATAGCTCTATGTGCAGTTGTATCATTCCATGAGAACCAAGATCCGATCATCGGCA 3187
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 3138 C-GGGATAGCTCTATGTGCAGTTGTCTCATTCCATGAGAACCAAGATCCGATCATCGACA 3196
Query 3188 GTTTCTCAGTAAAATGCACATTGCAATTTGAAAACGAAGATGGGTCTC-T-TC-GCTTTG 3244
|||||||||||||||||||| |||| |||||||||||||| ||||||| | || | ||||
Sbjct 3197 GTTTCTCAGTAAAATGCACACTGCAGTTTGAAAACGAAGACGGGTCTCGTATCCGATTTG 3256
Query 3245 ATTGTGATATCGGATGTTTGAACGAA-CCAGGAATGA-TTGAGGCAGACCATGTTTTTAT 3302
|||||||||||||| |||||| | || ||||||| || ||| ||||||||||||||||||
Sbjct 3257 ATTGTGATATCGGAAGTTTGA-CAAAACCAGGAA-GAATTGGGGCAGACCATGTTTTTAT 3314
Query 3303 CGGCTATGTCACTTGCTCACGTTTGAAAGATCACCACTCTATACCTATTCATCACCCTAC 3362
|||||||||| |||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 3315 CGGCTATGTCCCTTGCTCACGTTTGAAAGATTACTACTCTATACCTATTTATCACCCTAC 3374
Query 3363 A-ACTGTAAAAATGCAGTTCCACTTGACTGATG-CTTGTAAAAGTAAAGTGGTGGATTGT 3420
| | ||||||| || ||||| ||||| |||||| || |||||||| ||||||||||||||
Sbjct 3375 ATA-TGTAAAAGTGGAGTTCTACTTGCCTGATGGCT-GTAAAAGTGAAGTGGTGGATTGT 3432
Query 3421 GGGTTCCGTTTGATGTAC 3438
||||||||||||||||||
Sbjct 3433 GGGTTCCGTTTGATGTAC 3450
> Ahg915685 jgi|Araly1|915685|Al_scaffold_0008_436
Length=2241
Score = 2093 bits (1133), Expect = 0.0
Identities = 1580/1792 (88%), Gaps = 46/1792 (3%)
Strand=Plus/Plus
Query 748 GAACA-TCCTCCACCCAACTACGGAATAGAACCACGCCTTAAGGAGA-TGGAAGAAAAGT 805
||||| | |||||||| ||||||||||||||| ||||||||||| | | |||| ||||
Sbjct 475 GAACAGT-CTCCACCCCACTACGGAATAGAACTGCGCCTTAAGGA-ACTAGAAGGAAAGA 532
Query 806 TAGATTTTGATAGCCTCGAAACTAAAACTGTTGGAATTGTTGGGATGCCTGGGATTGGTA 865
|| | |||||| || | ||||||| | ||||||||||||||||||||||||||||||||
Sbjct 533 TACAATTTGATTGCGTAGAAACTATGATTGTTGGAATTGTTGGGATGCCTGGGATTGGTA 592
Query 866 AAACCACTCTTGCAGAAACGTTGTATAGAAAGTGGGAACACAAGTTTGAGAGGAGTATGT 925
||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 593 AAACCACTCTTGCGGAAACATTGTATAGGAAGTGGGAACACAAGTTTGAGAGGAGCATGT 652
Query 926 TTTTCCCAGATGCCAGTAAGATGGCGAATGAACACGGAATGTGTTGGCTGCAGAAGAGAT 985
|||||||||||| |||||||||||||| | ||| | | | | | ||||||||||||
Sbjct 653 TTTTCCCAGATGTCAGTAAGATGGCGAGTCAAC-C---A-G-GAT---TGCAGAAGAGAT 703
Query 986 TATTGGAAGAGCTGTTGAAGGATACTAATCT-CAACATAGGATATACA-ACGAATGAACA 1043
|||||||||||||||||||||||| | || | ||| | |||||||||| | |||||||||
Sbjct 704 TATTGGAAGAGCTGTTGAAGGATATTCAT-TACAAGACAGGATATACAGA-GAATGAACA 761
Query 1044 TGAGTTTTGTAAGGATGTTCTTCTCCTAAAGAAAGTTTTTCTTGTCATAGATAATGTTAG 1103
||||||||||||||||| ||||||| ||||||||||||| |||| |||||| |||||||
Sbjct 762 TGAGTTTTGTAAGGATGATCTTCTCGAAAAGAAAGTTTTTGTTGTTATAGATGATGTTAG 821
Query 1104 TAGCGAGGAACAGATCGAAA-CTCTTTTTGGTAAATG-GAATTGGATTAAAAATGGAAGC 1161
|||| |||||||| || ||| ||||||||||| |||| | ||||||| ||||| || |||
Sbjct 822 TAGCAAGGAACAGCTC-AAATCTCTTTTTGGTCAATGTG-ATTGGATCAAAAAAGGTAGC 879
Query 1162 AAGATTGTTATTACGTCAAGTGATGAGTCAATGCTCAAGGGTTTCGTTAAAGATACTTAT 1221
|||||||||||||| ||||||||| ||||| ||||||||| | ||| | ||||| |||
Sbjct 880 AAGATTGTTATTACATCAAGTGATAAGTCACTGCTCAAGGAACTGGTTGACGATACCTAT 939
Query 1222 GTAGTCCCAAGTTTGAACAGCAGAGACAGTCTACTGTGGTTTACTAATCATGCATTTGGT 1281
||||||||||| |||||||||||||||||| ||||||||||||| ||||| || ||||||
Sbjct 940 GTAGTCCCAAGGTTGAACAGCAGAGACAGTTTACTGTGGTTTACCAATCACGCCTTTGGT 999
Query 1282 TTGGATGATGCCCAGGGAAACTTGGTAAAGTTGTCCAAACACTTTCTGAATTATGCCAAA 1341
|||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1000 TTGGATGATGCCGAGGGAAACTTCGTAAAGTTGTCCACACACTTTCTGAATTATGCCAAA 1059
Query 1342 GGCAACCCACTAGCCCTCGGAGCTTTTGGTGTAGAACTTTGTGGGAAAGACAAGGCTGAT 1401
||||||||||||| |||| |||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 1060 GGCAACCCACTAGTCCTCAGAGCTTTTGGTGTAGAACTTCGTGGGAAAGACGAGGCTTAT 1119
Query 1402 TGGGAAAAGAGAATAAAAACATTGACACTAATTTCCAATAAGATGATCCAAGATGTCTTG 1461
|||||| |||| || |||| || ||| || |||||||||||||||||| ||||||||
Sbjct 1120 TGGGAACAGAGGATTGGAACACTGGCACAAAGCTCCAATAAGATGATCCAATATGTCTTG 1179
Query 1462 AGAAGAAGGTATGATGAACTCACAGAGAGGCAGAAAGATATTTTTCTTGACGTCGCATGT 1521
|||| ||| ||||||||||||||||||||||| |||||| |||||||||||| ||||||
Sbjct 1180 AGAAAAAGATATGATGAACTCACAGAGAGGCAAAAAGATGCTTTTCTTGACGTTGCATGT 1239
Query 1522 TTCTTCAAATCAGAGAATGAAAGTTATGTACGACACGTGGTGAATTCATGTGATTCTGAG 1581
||||||||||||||||||| ||||||||||||| | |||| ||||||||||| ||| ||
Sbjct 1240 TTCTTCAAATCAGAGAATGTAAGTTATGTACGATGCTTGGTAAATTCATGTGAATCTAAG 1299
Query 1582 TCTACTAAGAG-TTGGGATGAAATAACAGATCTCAAAGGA-AAGTTTCTTGTCAATATTT 1639
||||||| | | |||| |||| |||| ||||||| || || |||||||| ||||||||||
Sbjct 1300 TCTACTATG-GTTTGGCATGACATAAGAGATCTCCAA-GACAAGTTTCTCGTCAATATTT 1357
Query 1640 CTGGTGGTCGAGTTGAGATGCATGATATACTATGCACATTCGCCAAGGAACTTGCTTCAC 1699
||||||||||||||||||||||||||||| |||| |||||||| |||||| |||||||||
Sbjct 1358 CTGGTGGTCGAGTTGAGATGCATGATATAGTATGTACATTCGCTAAGGAAATTGCTTCAC 1417
Query 1700 AAGCATTGACTGAAG---ATACAAGGGTTCATCTCAGGCTGTGGAACTATCAAGATATCA 1756
|||||||||| |||| |||||| ||||||||||| ||| ||||||||||||||||||
Sbjct 1418 AAGCATTGACCGAAGAAAATACAAAGGTTCATCTCATGCTCCGGAACTATCAAGATATCA 1477
Query 1757 TGTGGTT-TCTCAACAATGAATTGGAAATGGAAAATGTCAGAGGTATTTTCTTAGACATG 1815
| | ||| || || ||| ||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1478 T-TTGTTGGCTGAAGAATAAATTGGAAATGAAAAATGTCAGAGGTATATTCTTAGACATG 1536
Query 1816 TCTAAAGTTCCGGAGGAAATGACATTTGATGGTAACATCTTTAGCAATATGTGCAATCTT 1875
||| ||||||||||||||| || ||||||| | ||||||||||||| ||||||||||||
Sbjct 1537 TCTGAAGTTCCGGAGGAAACGATATTTGATTCTCACATCTTTAGCAAAATGTGCAATCTT 1596
Query 1876 CGATATCTCAAAATATACAGTTCTGTTTGCCATAAGGAAGGCGAAGGTATCTTCAAATTT 1935
|||||||||||||||| || ||||| |||| |||| |||||||||||||||||| ||||
Sbjct 1597 CGATATCTCAAAATATGCACTTCTGCCTGCCCTAAGCAAGGCGAAGGTATCTTCACATTT 1656
Query 1936 GACACAGT-TAGGGAAATTCAG-TTACCATTAGACAAGGTACGCTATCTCCACTGGATGA 1993
|||| | || |||||||| | ||||||||| | |||||||| ||||||||||||||||
Sbjct 1657 GACA-TCTATAAGGAAATTC-GCTTACCATTACATAAGGTACGGTATCTCCACTGGATGA 1714
Query 1994 AATATCCATGGGAGAAACTTCCATCAGACTTCAACCCGGAGAATCTCGTTGATCTTGAAC 2053
||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||
Sbjct 1715 AATATCCATGGGAGAAACTGCCATCAGACTTCAACCCGAAGAATCTTGTTGATCTTGAAC 1774
Query 2054 TGCCTTATAGCTCCATTAAGAAAGTTTGGGAGGGTGTTAAGGATACCCCGATACTAAAGT 2113
|||||||||||||||||||| ||||||||| |||||| ||||||||||| | ||||||||
Sbjct 1775 TGCCTTATAGCTCCATTAAGCAAGTTTGGGTGGGTGTAAAGGATACCCCAAAACTAAAGT 1834
Query 2114 GGGCCAATCTAAGCTATTCAAGTAAGTTGACTAACCTTTTAGGGTTGTCAAATGCTAAAA 2173
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1835 GGGCCAATCTCAGCTATTCAAGTAAGTTGACTAACCTTTTAGGGTTGTCAAATGCTAAAA 1894
Query 2174 ATCTTGAAAGATTGAATCTTGAAGGTTGCACAAGTTTGCTTAAACTGCCCCAAGAGATGG 2233
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1895 ATCTTGAAAGATTGAATCTTGAAGGTTGCACAAGTCTGCTTAAACTGCCCCAAGAGATGG 1954
Query 2234 AGAACATGAAAAGTCTTGTCTTCCTGAACATGAGACGTTGCACTAGTCTCACATGTCTTC 2293
| |||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||
Sbjct 1955 AAAACATGAAAAGTCTTGTCTTCCTGAATATGAGACGTTGCACGAGTCTCACATTTCTTC 2014
Query 2294 AAAGTATTAA-AGTGAGCTCTCTGAAAATTCTCATACTCAGTGA-CTGC-TCAAAACTTG 2350
|||| || || | |||| |||||||||||||||||||||||||| | | | | ||
Sbjct 2015 AAAGAATGAATA-TGAGTTCTCTGAAAATTCTCATACTCAGTGAACCACATGGTA-CTC- 2071
Query 2351 AGGAATTTGAGGTGATT--TCGGAAAATCTGGAAGAATTATATTTAGATGGAACTGCAAT 2408
||| || | | || |||||||||||||||| ||||||||||||||||||||||||
Sbjct 2072 AGGGG---GACG-GCTTCCTCGGAAAATCTGGAAGCATTATATTTAGATGGAACTGCAAT 2127
Query 2409 AAAGGGACTTCCTCCAGCGGCCGGGGATCTGACGAGACTTGTCGTCTTAAATATGGAAGG 2468
||||||||| |||||||| |||||||||||| |||||||| | ||||||||||| ||||
Sbjct 2128 AAAGGGACTCCCTCCAGCCACCGGGGATCTGATGAGACTTGCCATCTTAAATATGAAAGG 2187
Query 2469 CTGTACAGAACTGGAGAGTCTTCCCAAACGTCTTGGAAAACAGAAAGCTCTT 2520
||||||||||| |||||||||||||||| ||||||||| ||||||||||||
Sbjct 2188 ATGTACAGAACTAGAGAGTCTTCCCAAACATCTTGGAAACCAGAAAGCTCTT 2239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132668699478
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5