BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44900.1
Length=863
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948593 jgi|Araly1|948593|scaffold_800480.1 1175 0.0
> Ahg948593 jgi|Araly1|948593|scaffold_800480.1
Length=801
Score = 1175 bits (636), Expect = 0.0
Identities = 748/802 (93%), Gaps = 8/802 (1%)
Strand=Plus/Plus
Query 33 AAAAACCAT-TACCTTCCATGGGCGCCTCCTTCTCCCTCTTTACCGACGTTGGACCGATC 91
||| ||||| | |||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 4 AAACACCATCT-CCTTCCATGGGCTCCTCCTTCTCCCTCTTTACCGATGTTGGACCGATC 62
Query 92 CCGCCTCAGTATCAAGTGTTCATCAACTTCCGAGGCGAAAAACTTCGTGATGGGTTCCTA 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 CCGCCTCAGTATCAAGTGTTCATCAACTTCCGAGGCGAAAAACTTCGTGATGGGTTCCTA 122
Query 152 GGGTTTCTTGTGGATGCTCTTTTAAAAGAGAATGTCAACGTTTTTATAGATGATCATGAG 211
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 123 GGGTTTCTTGTAGATGCTCTTTTAAAAGAGAATGTCAACGTCTTTATAGATGATCATGAG 182
Query 212 CTTAGAGGCAGAGATCTTGATCATCTCTTCAGTAGGATCGAGGAATCGAGAGTCGCATTG 271
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 CTTAGAGGGAGAGATCTTGATCATCTCTTCAGTAGGATCGAGGAATCGAGAGTCGCATTG 242
Query 272 ACAATCTTCTCCAAGAACTTCACCAACTCAAGATGGTGCTTAGATGAGCTTGCTAAGATC 331
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 243 ACAATCTTCTCCAAGAACTTCACCGAGTCAAGATGGTGCTTAGATGAGCTTGCTAAGATC 302
Query 332 AAAGAATGTGTGGATCAAGAAAGTCTTACAGTGATTCCTATCTTCTTTAAGATGAAAACA 391
| |||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 303 AGAGAATGCGTGGACCAAGGAAGTCTTACAGTGATTCCTATCTTCTTTAAGATGAAAACA 362
Query 392 GACGATGTGAAGAAACTGAAGGGGAATTTTGGAGACAACTTCCGGGACCTGAAGTTAACG 451
||||||||||||||||| || || || || |||||||| |||||||||||||||| ||||
Sbjct 363 GACGATGTGAAGAAACTAAAAGGAAAGTTCGGAGACAATTTCCGGGACCTGAAGTCAACG 422
Query 452 CATCGCGGCGAGCCTGAAACTTATCGGAGATGGAAAGATGCTAT-ACTGTATGTTTCTAA 510
|||||||||||||| |||| || |||||||||||| || ||| | | | | |||||| |
Sbjct 423 CATCGCGGCGAGCCAGAAAATTTTCGGAGATGGAAGGAAGCTTTGA-TTTTTGTTTC--A 479
Query 511 G-AAAA-CTGGCTTGTCTTCGTCACGATACAGTCGCCAGAATGATTTGGTCAACACAATC 568
| |||| ||||||||||||| |||||||||||||| || ||||||||||| | |||||||
Sbjct 480 GAAAAAGCTGGCTTGTCTTCATCACGATACAGTCGTCAAAATGATTTGGTGAGCACAATC 539
Query 569 GTCGAGGAGGTTAAGAAAGTTCTAAACGATATCGCCGAGATCGAACGACAAATTGCTGAA 628
|| |||||||||||||||||| ||||||||||||||||||| ||||||||||| | |||
Sbjct 540 GTTGAGGAGGTTAAGAAAGTTTTAAACGATATCGCCGAGATGGAACGACAAATCGTTGAC 599
Query 629 GAGAAGCGCAACCATTTGGCGGCAAGAACAGATGAATTGATTAGACTTGTTGTCCGGTTC 688
| ||| ||||| |||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 600 GTGAAACGCAAGAATTTGGCGGCAAGAACAGATGAATTGATTAGATTTGTTGTCCGTTTC 659
Query 689 CTAAGTCTGtttcttctttttacaatagtttttggtccttatgttttaggccttctcact 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CTAAGTCTGTTTCTTCTTTTTACAATAGTTTTTGGTCCTTATGTTTTAGGCCTTCTCACT 719
Query 749 tttttctcttttcttGTGGGTCGTTTGATAATCAATCGAGCTGTGGAAAGTGAGTGGTGA 808
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 720 TTTTTCTCTTTTCTTGTGGGTCGGTTGATAATCAATCGAGCTGTGGAAAGTGAGTGGTGA 779
Query 809 ATGGTAACGTTTGCGTTTCTAT 830
||||| ||||||||||||||||
Sbjct 780 ATGGTTACGTTTGCGTTTCTAT 801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31947004446
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5