BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44910.1
Length=726
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948592 jgi|Araly1|948592|scaffold_800479.1 952 0.0
> Ahg948592 jgi|Araly1|948592|scaffold_800479.1
Length=769
Score = 952 bits (515), Expect = 0.0
Identities = 660/730 (90%), Gaps = 9/730 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGAACCACCACCGTACCAACGTCCTCCTCAAGTATTCATTAGTTTCTATGGAAAC 60
|||||||| ||| ||| ||||||||||||||||| |||||||| |||||| ||||| |
Sbjct 21 ATGGCAGAGCCAAGACCATACCAACGTCCTCCTCAGGTATTCATCAGTTTCCATGGAGAT 80
Query 61 GAATCGCGCGACAATTTCATCAAATATCTTGTGTGGGGATTGAGAGACGAGAGAGTCAAC 120
|||| |||||||||||||||| |||||||||||||||||||||||| || |||||||||
Sbjct 81 GAATTACGCGACAATTTCATCAGATATCTTGTGTGGGGATTGAGAGATGAAAGAGTCAAC 140
Query 121 GTTTTCGTAGACAGAGCAGAAGCAAATAGGAGAGACATACGAAATATTTCCACAAAGATC 180
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 141 GTTTTCATAGACAGAGCAGAAGCAAATAGGAGAGACATAAGAAATATTTCCACAAAGATC 200
Query 181 GAGGAGTCGAATATCGCGGTCGTCATCTTCTCCAAGAGGTATACAGAGTCAGAGATGTGC 240
|||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 201 GAGGAGTCTAATATCGCGGTCATAATCTTCTCCAAGAGGTATACAGAGTCAGAGATGTGT 260
Query 241 TTGAACGAGCTTCAAAAGATGTACGAGCACGTAGAACAAAGCAACCTTAAGGTGATACCT 300
|||||||||| |||||||||| ||||||||||| ||||||||||||| ||||||||||||
Sbjct 261 TTGAACGAGCATCAAAAGATGCACGAGCACGTAAAACAAAGCAACCTCAAGGTGATACCT 320
Query 301 GTCTTCTATGATGTGAGCATAAGCGGTGTAAAGAACCTCGAGGATGAATTCGGTAATCAT 360
|||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 321 GTCTTCTACGATGTGAGCATAAGCGATGTAAAGAACCTCGAGGGTGAATTCGGTAATCAT 380
Query 361 TTCGAGGAACTGAGGGA-GAAATACGCAAACGATCCACTCAAGATCTTGAAGTGGGAGGA 419
||||||||| ||| || |||||| ||||| |||||||||||||||||||| |||||| |
Sbjct 381 TTCGAGGAAATGA-AGATGAAATATGCAAATGATCCACTCAAGATCTTGAATTGGGAGAA 439
Query 420 TTCATTGAGTTCAATAGTAGAGCGGACCGGCTTAACCTCCGAAGACCACGGAACGGGTTT 479
|||||||||||||||||||||| |||||||||||||||| ||||| |||||||| |||||
Sbjct 440 TTCATTGAGTTCAATAGTAGAGAGGACCGGCTTAACCTCAGAAGAACACGGAACAGGTTT 499
Query 480 AGGTCTTGTGAGGGCAATCGTCACGGCGGTTAAGAGCGAGCTAATGGA--CTCT-GAAAG 536
|||||| || | ||||||||| | |||||||||||||||||||| || |||| |||||
Sbjct 500 AGGTCTGGTCATGGCAATCGTTAGGGCGGTTAAGAGCGAGCTAACAGACTCTCTAGAAAG 559
Query 537 ACA-AAATATTACT-AAAGGACAAGTGTTTGTTTTGGCTTCAGCTGCGGTTTTTATCTGT 594
| | ||| |||| | ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 560 A-AGAAAGATTA-TGAAAGGACAAGTGTTTGTTTTGGCTTCAGCTGCGGTTTTTATCTTT 617
Query 595 AGTCTCATTGTAGCTCGTTTACTATGCACTGATGTGAAAGTTAATAAAGCTGTTAAGTGT 654
|||||| |||||||||||||||| |||||||||||||||||| | |||||||||||||||
Sbjct 618 AGTCTCTTTGTAGCTCGTTTACTTTGCACTGATGTGAAAGTTTACAAAGCTGTTAAGTGT 677
Query 655 TTACTAGGGTTTCCAGTTTTGGCTGGTATCTTGCACCAGCTTTACTGTCTACGGACCCAA 714
|||||||| |||| ||||||| |||| |||||||||||||||| ||| |||||| ||
Sbjct 678 TTACTAGGTTTTCTGGTTTTGGTTGGTGTCTTGCACCAGCTTTATTGTTTACGGAAACAT 737
Query 715 CCAAACAGAT 724
|| |||||||
Sbjct 738 CCGAACAGAT 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26724164817
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5