BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G44930.1 Length=2183 Score E Sequences producing significant alignments: (Bits) Value Ahg494490 jgi|Araly1|494490|fgenesh2_kg.8__306__AT5G44930.2 610 1e-173 Ahg482474 jgi|Araly1|482474|fgenesh2_kg.4__1534__AT2G35100.1 444 1e-123 > Ahg494490 jgi|Araly1|494490|fgenesh2_kg.8__306__AT5G44930.2 Length=1677 Score = 610 bits (330), Expect = 1e-173 Identities = 401/435 (92%), Gaps = 6/435 (1%) Strand=Plus/Plus Query 1054 AGA-GATGCCGCTTTGAAACCAGGGTTTGTGGTTAAGAAGCTGAGGAAAGTGAAACCAGG 1112 ||| ||||||||||||||||| |||| |||||||| |||| | || ||||||||||||| Sbjct 1149 AGATGATGCCGCTTTGAAACCGGGGTCTGTGGTTACGAAGTTAAGAAAAGTGAAACCAGA 1208 Query 1113 AAAGATTTTGAAGTACCAAAAGGTTATGAAAGAGGTTAGGCGATATTTTGACTATACACA 1172 ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| || Sbjct 1209 AAAGATTTTAAAGTACCAAAAGGCTATGAAAGAGGTTAGGCGATATTTTGACTATACGCA 1268 Query 1173 TCTAAATGGAAGTGTGAACGAGATCTGGAGACAAGTTACTAAGAAGATACCGCTAATCAA 1232 || ||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||| Sbjct 1269 TCCAAACGGAAGTGTGAATGAGATCTGGAGACAAGTTACCAAGAAGATACCACTAATCAA 1328 Query 1233 ACTGATGATTAATCGGGAGAAGCGCATGATCAAGAGAGATGGAAGTGACCCTCAATGTTC 1292 ||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||| Sbjct 1329 ACTGATGATTAATCGTGAGAAGCGCATGATCAAGAGAGAAGGAAGTGACCTTCAATGTTC 1388 Query 1293 TTGTTTATGCTCAAACCAAACCGGGATCATCCATGGTGTCTAGTAAGGTTAAATGCCTAG 1352 ||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||| ||| Sbjct 1389 TTGTTTATGCTTAAACCAAACCGGGATCATCCATGGTGTTTAGTAATGTTAAATGCATAG 1448 Query 1353 CAAGCTCATGCTAAGCAACAAAATGTGATCATTATTAATGATGAATCAAAGACTGGAAAG 1412 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1449 CAAGCTCACGCTAAGCAACAAAATGTGATCATTATTAACGATGAATCAAAGACTGGAAAG 1508 Query 1413 GAACAACAAGAGAAACCACATCACTCTCTAATTCCGGGTCAA-GGGTTTGATCAAGAATG 1471 |||||||||||||||||||||||||||||||||| |||||| |||| || | ||||| Sbjct 1509 GAACAACAAGAGAAACCACATCACTCTCTAATTCGGGGTCACCGGGTG-GA--A-GAATG 1564 Query 1472 CGCGTTTCCTGGTGG 1486 ||| ||||||||||| Sbjct 1565 CGCATTTCCTGGTGG 1579 Score = 520 bits (281), Expect = 2e-146 Identities = 395/447 (88%), Gaps = 19/447 (4%) Strand=Plus/Plus Query 318 GTGGTATCTTTACT-CGGATCTTACCCGACCCGAAGTTAAACGAGTCGGGTCTCCGATTG 376 |||| |||||| || | | ||||||||||||||| || |||| |||||||| ||||||| Sbjct 403 GTGGGATCTTT-CTCCACA-CTTACCCGACCCGAAATTGAACGGGTCGGGTCACCGATTG 460 Query 377 TAAGGGTTTTTGACCCGGCTGAGGCGGATTTGTTTTACGTCTCTGCTTTCTCTTCGT-TA 435 | |||||||||||||| |||||||| |||||||| ||||| || ||||||||||| | || Sbjct 461 TCAGGGTTTTTGACCCTGCTGAGGCAGATTTGTTCTACGTTTCGGCTTTCTCTTC-TCTA 519 Query 436 AGCTTGATTGTGGATTCGGGT-----C------GG-CCCGGGTTTGGGTACAGTGATGAG 483 |||||||||||| |||||||| | || ||||||||||||| ||||||||| Sbjct 520 AGCTTGATTGTGAATTCGGGTCGACCCGAGTTTGGATCCGGGTTTGGGTATAGTGATGAG 579 Query 484 GAGATGCAGGAGAGTTTGGTGAGTTGGTTAGAAAGTCAAGAATGGTGGAGGAGGAACAAT 543 ||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||| Sbjct 580 GAGATGCAGGAGAGTTTGGTGAGTTGGTTGGAAGGTCAAGAGTGGTGGAGGAGGAACAAT 639 Query 544 GGGAGGGATCATGTGATTGTTGCCGGTGATCCAAATGCGTTGAAACGGGTCATGGATCGG 603 ||||||||||||||||||||||| ||||| || |||||||||| ||||| ||||||||| Sbjct 640 GGGAGGGATCATGTGATTGTTGCTGGTGACCCGAATGCGTTGAGCCGGGTTATGGATCGG 699 Query 604 GTTAAGAATGCGGTTTTGCTTGTGACGGATTTT-GACCGGTTAAGAGCAGACCAAGGGTC 662 ||||||| ||||||||||||||||||||||||| | | |||| ||||| ||||||||||| Sbjct 700 GTTAAGACTGCGGTTTTGCTTGTGACGGATTTTCGTC-GGTTTAGAGCTGACCAAGGGTC 758 Query 663 GCTTGTGAAAGACGTAATCATACCTTATTCTCATAGGATTGATGCTTATGAAGGCGAGCT 722 ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct 759 CCTTGTGAAAGACGTAATAATACCTTATTCTCATAGGGTTGATGCTTATGAAGGCGAGCT 818 Query 723 TGGAGTTAAGCAGAGGACCAACTTGTT 749 ||||||||||||||||| ||||||||| Sbjct 819 TGGAGTTAAGCAGAGGAACAACTTGTT 845 Score = 460 bits (249), Expect = 1e-128 Identities = 290/310 (94%), Gaps = 2/310 (1%) Strand=Plus/Plus Query 7 AACCCCAAAATCAGAAAACCCAATAATTCATCTTCGAAGAAGGTCACAGTTTCCG-TTCT 65 ||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||| Sbjct 16 AACCCCAAAATCAGAAAACCCAATAATTCATCTTCAAAGAAGGTCACAGTTT-CGTTTCT 74 Query 66 CTCTGTTTTCTTAGTGTTCGTCTTCGTTAATACTTTCTTCTACCCAAGTTTTTACTCTGA 125 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 75 CTCTGTTTTCTTTGTTTTCGTCTTCGTTAATACTTTCTTCTACCCAAGTTTTTACTCTGA 134 Query 126 CTCTGGCTCAATTCGACGCAATCTCGTTGATTCTCGAGAAAGTTTCCATTTTCCGGGAAA 185 |||||||||||||| ||||||||||| ||||||||||||||||| ||||||| | ||| Sbjct 135 TTCTGGCTCAATTCGTCGCAATCTCGTCGATTCTCGAGAAAGTTTTGATTTTCCTGAAAA 194 Query 186 TTTTCGTAAAACGAAGGTTTACATGTACGAATTGCCGACGAATTTTACTTACGGAGTTAT 245 || |||||||||||||||||||||||||| |||||||||||||||||| |||||||||| Sbjct 195 ATTGCGTAAAACGAAGGTTTACATGTACGACTTGCCGACGAATTTTACTCACGGAGTTAT 254 Query 246 CGAGCAACACGGCGGAGAAAAATCTGATGACGTCACCGGGTTGAAATATCCGGGTCATCA 305 | |||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 255 CCAGCAACACGGAGGAGAGAAATCTGATGACGTAACCGGGTTGAAATATCCGGGTCATCA 314 Query 306 GCATATGCAT 315 |||||||||| Sbjct 315 GCATATGCAT 324 Score = 353 bits (191), Expect = 3e-96 Identities = 229/247 (93%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 774 CAAAGATGGAGGCAAAGTCCGAGATTTGCTTTTCAAGCTGCTTGAGAAAGAAGAGGATGT 833 |||| ||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 909 CAAATATGGAGGCAGGGTCCGAGATTTGCTTTTCAAGCTTCTTGAGAACGAAGAGGATGT 968 Query 834 TGTGATCAAACGCGGAACACAGTCAAGAGAGAATATGCGTGCGGTTAAACAAGGAATGCA 893 ||||||||||| ||||||||| ||||||||||||| |||||||| ||||||||||||||| Sbjct 969 TGTGATCAAACACGGAACACAATCAAGAGAGAATAGGCGTGCGGCTAAACAAGGAATGCA 1028 Query 894 TACGTCTAAGTTTTGTCTACAT-CTAGCTGGTGATACTTC-TTCTGCTTGCAGATTATTT 951 |||||||||||||||||||||| | ||||||||||||| | ||| ||||||||||||||| Sbjct 1029 TACGTCTAAGTTTTGTCTACATTC-AGCTGGTGATACT-CATTCAGCTTGCAGATTATTT 1086 Query 952 GATGCCATTGCTAGTTTATGTGTCCCGGTGATTGTAAGCGATGGGATTGAGCTACCTTTT 1011 |||||| |||| |||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 1087 GATGCCCTTGCCAGTTTATGTGTCCCTGTGATTGTAAGCGATGGCATTGAGCTACCTTTT 1146 Query 1012 GAAGATG 1018 ||||||| Sbjct 1147 GAAGATG 1153 > Ahg482474 jgi|Araly1|482474|fgenesh2_kg.4__1534__AT2G35100.1 Length=1741 Score = 444 bits (240), Expect = 1e-123 Identities = 767/1013 (76%), Gaps = 69/1013 (7%) Strand=Plus/Plus Query 271 GATGACGTCAC--CGGGTTGAAATATCCGGGTCATCAGCATATGCATGAGTGGTATCTTT 328 ||||||||||| | | || || ||||||||||||||||||||||| ||||||||||||| Sbjct 329 GATGACGTCACTAC-GCTT-AAGTATCCGGGTCATCAGCATATGCACGAGTGGTATCTTT 386 Query 329 ACTCGGATCTTACCCGACCCGAAGTTAAACGAGT-CGGGTCTCCGATTGTAAGGGTTTTT 387 ||||||||||| ||||||||||| | ||| | ||||||||||||||| | || || Sbjct 387 TCTCGGATCTTAATCGACCCGAAGTGGATCGA-TCCGGGTCTCCGATTGTCCGTGTCTTG 445 Query 388 GA-CCCGGCTGAGGCGGATTTGTTTTACGTCTCTGCT-TTCTCTTCGT-TAAGCTTGATT 444 || || | | || || ||| | || |||||| | | | |||||||| | | ||||| ||| Sbjct 446 GATCCTGAC-GACGCTGATCTCTTCTACGTC-CCGGTGTTCTCTTC-TCTCAGCTTAATT 502 Query 445 GTGGATTCGGGT----C-G--G--CCCGGGTTTGGGTACAGTGATGAGGAGATGCAGG-A 494 ||| || ||||| | | | || || | || ||||| || ||| ||||||||| | Sbjct 503 GTGAATGCGGGTCGACCTGTTGAACCTGGATCCGGTTACAGCGACGAGAAGATGCAGGAA 562 Query 495 GAGTTTGGT-GAGTTGG-TTAGAAAGTCAAGAATGGTGGAGGAGGAACAATGGGAGGGAT 552 | | ||| | ||| ||| || ||| ||||||| |||||||||||||| |||||| ||| Sbjct 563 G-GGTTGATGGAG-TGGCTT-GAAGGTCAAGAGTGGTGGAGGAGGAATGGTGGGAGAGAT 619 Query 553 CATGTGATTGTTGCCGGTGATCCAAATGCGTTGAAACGGGTCATGGATCGGGTTAAGAAT 612 || ||||| ||||| ||||| ||||||||| | ||| || |||| ||||| |||||| Sbjct 620 CACGTGATACCCGCCGGCGATCCGAATGCGTTGTATCGGATCTTGGACCGGGTCAAGAAT 679 Query 613 GCGGTTTTGCTTGTGACGGATTTTGACCGGTTAAGAGCA-GACCAAGGGTCGCTT-GTGA 670 ||||| |||| ||| ||||||| | ||||| || ||| || ||||| ||| || || | Sbjct 680 TCGGTTCTGCTCGTGGCGGATTTCGGGCGGTTGAG-GCATGATCAAGGATCG-TTCGTCA 737 Query 671 AAGACGTAATCATACCTTATTCTCATAGGA-TTGATGCT-TATGAA-GGCGAGCTTGGAG 727 | || || | |||||||| ||||||| || | || || | | || || || |||||| Sbjct 738 AGGATGTGGTAATACCTTACTCTCATA-GAGTCAAT-CTCT-TCAATGGAGAAATTGGAG 794 Query 728 TTAAGCAGAGGACCAAC-TTGTTGTTCTTCATGGGAAATCGATATCGCAAAGATGGAGGC 786 | || | | | | || || | |||||||||||||||||||||||||||||||| || Sbjct 795 TGCAGGATCGCAAC-ACATTACTCTTCTTCATGGGAAATCGATATCGCAAAGATGGTGGA 853 Query 787 AAAGTCCGAGATTTGCTTTTC-AAGCTGCTTGAGAAAG-AAGAGGATGTTGTGATCAAAC 844 ||||| || |||||||||||| ||| | ||||| |||| |||| ||||| || |||| Sbjct 854 AAAGTTCGTGATTTGCTTTTCCAAGTT-CTTGA-AAAGGAAGATGATGTAACAATAAAAC 911 Query 845 GCGGAACACAGTCAAGAGAGAATATG-CGTGCGGTTAA-ACAAGGAATGCATACGTCTAA 902 ||||| || || |||||||| | || || | || | ||||||||||||| || || Sbjct 912 ATGGAACTCAATCCAGAGAGAACC-GACGAGCTGCTACGA-AAGGAATGCATACTTCAAA 969 Query 903 GTTTTGTCTACATC-TAGCTGGTGATACTTCTTCTGCTTGCAGATTATTTGA-TGCCATT 960 ||||||| || ||| | || ||||| ||| | ||||| |||||| | ||||| | ||||| Sbjct 970 GTTTTGTTTAAATCCT-GCGGGTGACACTCCATCTGCCTGCAGACTCTTTGACT-CCATT 1027 Query 961 G-CTAGTTTATGTGT-CCCGGTGATTGTAAGCGATGGGATTGAGCTACCTTTTGAAGATG 1018 | | ||||| ||||| |||| ||||||| |||||| || ||| ||||||| ||||||| Sbjct 1028 GTC-AGTTTGTGTGTGCCCG-TGATTGTTAGCGATAACATCGAGTTACCTTTCGAAGATG 1085 Query 1019 TCATAGATTACAGGAAGTTCTCTATATTC-TTGAGGAGAGATGCCGCTTTGAAACCAGGG 1077 | |||||||| || ||||| || || || |||||| | |||| ||| || | || || Sbjct 1086 TTATAGATTATAGAAAGTTTTCGATTTTTGTTGAGGCCA-ATGCAGCTCTGCAGCCCGGT 1144 Query 1078 TTTGTGGTTAAGAAGCTGAGGAAAGTGAAA-CCAGGAAAGATTTTGAAGTACCAAA-AG- 1134 ||| |||| ||| |||||||||| | ||| ||| ||| ||| || |||| || | || Sbjct 1145 TTTCTGGTGCAGATGCTGAGGAAAATTAAAACCAAGAA-GATCCTGGAGTATCAGAGAGA 1203 Query 1135 GTTATGAAAGAGGTTAGGCGATATTTTGACTAT-ACACATCTAAATGGAAGT-GTGAACG 1192 | ||| || ||| || || |||||||||||| ||| | | ||||||| | ||||| | Sbjct 1204 G--ATGCAATCGGTAAGACGGTATTTTGACTATGACA-ACCCAAATGGA-GCAGTGAAGG 1259 Query 1193 AGATCTGGAGACAAGT-TACTAAGAAGATACCGCTAATCAAACTGATGATTAA 1244 | |||||| | ||||| | | ||||| |||| || |||||||| |||| ||| Sbjct 1260 AAATCTGGCGTCAAGTCT-CGCAGAAGTTACCACTCATCAAACTAATGAGTAA 1311 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82160658465 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5