BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44930.1
Length=2183
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494490 jgi|Araly1|494490|fgenesh2_kg.8__306__AT5G44930.2 610 1e-173
Ahg482474 jgi|Araly1|482474|fgenesh2_kg.4__1534__AT2G35100.1 444 1e-123
> Ahg494490 jgi|Araly1|494490|fgenesh2_kg.8__306__AT5G44930.2
Length=1677
Score = 610 bits (330), Expect = 1e-173
Identities = 401/435 (92%), Gaps = 6/435 (1%)
Strand=Plus/Plus
Query 1054 AGA-GATGCCGCTTTGAAACCAGGGTTTGTGGTTAAGAAGCTGAGGAAAGTGAAACCAGG 1112
||| ||||||||||||||||| |||| |||||||| |||| | || |||||||||||||
Sbjct 1149 AGATGATGCCGCTTTGAAACCGGGGTCTGTGGTTACGAAGTTAAGAAAAGTGAAACCAGA 1208
Query 1113 AAAGATTTTGAAGTACCAAAAGGTTATGAAAGAGGTTAGGCGATATTTTGACTATACACA 1172
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1209 AAAGATTTTAAAGTACCAAAAGGCTATGAAAGAGGTTAGGCGATATTTTGACTATACGCA 1268
Query 1173 TCTAAATGGAAGTGTGAACGAGATCTGGAGACAAGTTACTAAGAAGATACCGCTAATCAA 1232
|| ||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1269 TCCAAACGGAAGTGTGAATGAGATCTGGAGACAAGTTACCAAGAAGATACCACTAATCAA 1328
Query 1233 ACTGATGATTAATCGGGAGAAGCGCATGATCAAGAGAGATGGAAGTGACCCTCAATGTTC 1292
||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1329 ACTGATGATTAATCGTGAGAAGCGCATGATCAAGAGAGAAGGAAGTGACCTTCAATGTTC 1388
Query 1293 TTGTTTATGCTCAAACCAAACCGGGATCATCCATGGTGTCTAGTAAGGTTAAATGCCTAG 1352
||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||| |||
Sbjct 1389 TTGTTTATGCTTAAACCAAACCGGGATCATCCATGGTGTTTAGTAATGTTAAATGCATAG 1448
Query 1353 CAAGCTCATGCTAAGCAACAAAATGTGATCATTATTAATGATGAATCAAAGACTGGAAAG 1412
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1449 CAAGCTCACGCTAAGCAACAAAATGTGATCATTATTAACGATGAATCAAAGACTGGAAAG 1508
Query 1413 GAACAACAAGAGAAACCACATCACTCTCTAATTCCGGGTCAA-GGGTTTGATCAAGAATG 1471
|||||||||||||||||||||||||||||||||| |||||| |||| || | |||||
Sbjct 1509 GAACAACAAGAGAAACCACATCACTCTCTAATTCGGGGTCACCGGGTG-GA--A-GAATG 1564
Query 1472 CGCGTTTCCTGGTGG 1486
||| |||||||||||
Sbjct 1565 CGCATTTCCTGGTGG 1579
Score = 520 bits (281), Expect = 2e-146
Identities = 395/447 (88%), Gaps = 19/447 (4%)
Strand=Plus/Plus
Query 318 GTGGTATCTTTACT-CGGATCTTACCCGACCCGAAGTTAAACGAGTCGGGTCTCCGATTG 376
|||| |||||| || | | ||||||||||||||| || |||| |||||||| |||||||
Sbjct 403 GTGGGATCTTT-CTCCACA-CTTACCCGACCCGAAATTGAACGGGTCGGGTCACCGATTG 460
Query 377 TAAGGGTTTTTGACCCGGCTGAGGCGGATTTGTTTTACGTCTCTGCTTTCTCTTCGT-TA 435
| |||||||||||||| |||||||| |||||||| ||||| || ||||||||||| | ||
Sbjct 461 TCAGGGTTTTTGACCCTGCTGAGGCAGATTTGTTCTACGTTTCGGCTTTCTCTTC-TCTA 519
Query 436 AGCTTGATTGTGGATTCGGGT-----C------GG-CCCGGGTTTGGGTACAGTGATGAG 483
|||||||||||| |||||||| | || ||||||||||||| |||||||||
Sbjct 520 AGCTTGATTGTGAATTCGGGTCGACCCGAGTTTGGATCCGGGTTTGGGTATAGTGATGAG 579
Query 484 GAGATGCAGGAGAGTTTGGTGAGTTGGTTAGAAAGTCAAGAATGGTGGAGGAGGAACAAT 543
||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||
Sbjct 580 GAGATGCAGGAGAGTTTGGTGAGTTGGTTGGAAGGTCAAGAGTGGTGGAGGAGGAACAAT 639
Query 544 GGGAGGGATCATGTGATTGTTGCCGGTGATCCAAATGCGTTGAAACGGGTCATGGATCGG 603
||||||||||||||||||||||| ||||| || |||||||||| ||||| |||||||||
Sbjct 640 GGGAGGGATCATGTGATTGTTGCTGGTGACCCGAATGCGTTGAGCCGGGTTATGGATCGG 699
Query 604 GTTAAGAATGCGGTTTTGCTTGTGACGGATTTT-GACCGGTTAAGAGCAGACCAAGGGTC 662
||||||| ||||||||||||||||||||||||| | | |||| ||||| |||||||||||
Sbjct 700 GTTAAGACTGCGGTTTTGCTTGTGACGGATTTTCGTC-GGTTTAGAGCTGACCAAGGGTC 758
Query 663 GCTTGTGAAAGACGTAATCATACCTTATTCTCATAGGATTGATGCTTATGAAGGCGAGCT 722
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 759 CCTTGTGAAAGACGTAATAATACCTTATTCTCATAGGGTTGATGCTTATGAAGGCGAGCT 818
Query 723 TGGAGTTAAGCAGAGGACCAACTTGTT 749
||||||||||||||||| |||||||||
Sbjct 819 TGGAGTTAAGCAGAGGAACAACTTGTT 845
Score = 460 bits (249), Expect = 1e-128
Identities = 290/310 (94%), Gaps = 2/310 (1%)
Strand=Plus/Plus
Query 7 AACCCCAAAATCAGAAAACCCAATAATTCATCTTCGAAGAAGGTCACAGTTTCCG-TTCT 65
||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||
Sbjct 16 AACCCCAAAATCAGAAAACCCAATAATTCATCTTCAAAGAAGGTCACAGTTT-CGTTTCT 74
Query 66 CTCTGTTTTCTTAGTGTTCGTCTTCGTTAATACTTTCTTCTACCCAAGTTTTTACTCTGA 125
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CTCTGTTTTCTTTGTTTTCGTCTTCGTTAATACTTTCTTCTACCCAAGTTTTTACTCTGA 134
Query 126 CTCTGGCTCAATTCGACGCAATCTCGTTGATTCTCGAGAAAGTTTCCATTTTCCGGGAAA 185
|||||||||||||| ||||||||||| ||||||||||||||||| ||||||| | |||
Sbjct 135 TTCTGGCTCAATTCGTCGCAATCTCGTCGATTCTCGAGAAAGTTTTGATTTTCCTGAAAA 194
Query 186 TTTTCGTAAAACGAAGGTTTACATGTACGAATTGCCGACGAATTTTACTTACGGAGTTAT 245
|| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 195 ATTGCGTAAAACGAAGGTTTACATGTACGACTTGCCGACGAATTTTACTCACGGAGTTAT 254
Query 246 CGAGCAACACGGCGGAGAAAAATCTGATGACGTCACCGGGTTGAAATATCCGGGTCATCA 305
| |||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 255 CCAGCAACACGGAGGAGAGAAATCTGATGACGTAACCGGGTTGAAATATCCGGGTCATCA 314
Query 306 GCATATGCAT 315
||||||||||
Sbjct 315 GCATATGCAT 324
Score = 353 bits (191), Expect = 3e-96
Identities = 229/247 (93%), Gaps = 4/247 (2%)
Strand=Plus/Plus
Query 774 CAAAGATGGAGGCAAAGTCCGAGATTTGCTTTTCAAGCTGCTTGAGAAAGAAGAGGATGT 833
|||| ||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 909 CAAATATGGAGGCAGGGTCCGAGATTTGCTTTTCAAGCTTCTTGAGAACGAAGAGGATGT 968
Query 834 TGTGATCAAACGCGGAACACAGTCAAGAGAGAATATGCGTGCGGTTAAACAAGGAATGCA 893
||||||||||| ||||||||| ||||||||||||| |||||||| |||||||||||||||
Sbjct 969 TGTGATCAAACACGGAACACAATCAAGAGAGAATAGGCGTGCGGCTAAACAAGGAATGCA 1028
Query 894 TACGTCTAAGTTTTGTCTACAT-CTAGCTGGTGATACTTC-TTCTGCTTGCAGATTATTT 951
|||||||||||||||||||||| | ||||||||||||| | ||| |||||||||||||||
Sbjct 1029 TACGTCTAAGTTTTGTCTACATTC-AGCTGGTGATACT-CATTCAGCTTGCAGATTATTT 1086
Query 952 GATGCCATTGCTAGTTTATGTGTCCCGGTGATTGTAAGCGATGGGATTGAGCTACCTTTT 1011
|||||| |||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1087 GATGCCCTTGCCAGTTTATGTGTCCCTGTGATTGTAAGCGATGGCATTGAGCTACCTTTT 1146
Query 1012 GAAGATG 1018
|||||||
Sbjct 1147 GAAGATG 1153
> Ahg482474 jgi|Araly1|482474|fgenesh2_kg.4__1534__AT2G35100.1
Length=1741
Score = 444 bits (240), Expect = 1e-123
Identities = 767/1013 (76%), Gaps = 69/1013 (7%)
Strand=Plus/Plus
Query 271 GATGACGTCAC--CGGGTTGAAATATCCGGGTCATCAGCATATGCATGAGTGGTATCTTT 328
||||||||||| | | || || ||||||||||||||||||||||| |||||||||||||
Sbjct 329 GATGACGTCACTAC-GCTT-AAGTATCCGGGTCATCAGCATATGCACGAGTGGTATCTTT 386
Query 329 ACTCGGATCTTACCCGACCCGAAGTTAAACGAGT-CGGGTCTCCGATTGTAAGGGTTTTT 387
||||||||||| ||||||||||| | ||| | ||||||||||||||| | || ||
Sbjct 387 TCTCGGATCTTAATCGACCCGAAGTGGATCGA-TCCGGGTCTCCGATTGTCCGTGTCTTG 445
Query 388 GA-CCCGGCTGAGGCGGATTTGTTTTACGTCTCTGCT-TTCTCTTCGT-TAAGCTTGATT 444
|| || | | || || ||| | || |||||| | | | |||||||| | | ||||| |||
Sbjct 446 GATCCTGAC-GACGCTGATCTCTTCTACGTC-CCGGTGTTCTCTTC-TCTCAGCTTAATT 502
Query 445 GTGGATTCGGGT----C-G--G--CCCGGGTTTGGGTACAGTGATGAGGAGATGCAGG-A 494
||| || ||||| | | | || || | || ||||| || ||| ||||||||| |
Sbjct 503 GTGAATGCGGGTCGACCTGTTGAACCTGGATCCGGTTACAGCGACGAGAAGATGCAGGAA 562
Query 495 GAGTTTGGT-GAGTTGG-TTAGAAAGTCAAGAATGGTGGAGGAGGAACAATGGGAGGGAT 552
| | ||| | ||| ||| || ||| ||||||| |||||||||||||| |||||| |||
Sbjct 563 G-GGTTGATGGAG-TGGCTT-GAAGGTCAAGAGTGGTGGAGGAGGAATGGTGGGAGAGAT 619
Query 553 CATGTGATTGTTGCCGGTGATCCAAATGCGTTGAAACGGGTCATGGATCGGGTTAAGAAT 612
|| ||||| ||||| ||||| ||||||||| | ||| || |||| ||||| ||||||
Sbjct 620 CACGTGATACCCGCCGGCGATCCGAATGCGTTGTATCGGATCTTGGACCGGGTCAAGAAT 679
Query 613 GCGGTTTTGCTTGTGACGGATTTTGACCGGTTAAGAGCA-GACCAAGGGTCGCTT-GTGA 670
||||| |||| ||| ||||||| | ||||| || ||| || ||||| ||| || || |
Sbjct 680 TCGGTTCTGCTCGTGGCGGATTTCGGGCGGTTGAG-GCATGATCAAGGATCG-TTCGTCA 737
Query 671 AAGACGTAATCATACCTTATTCTCATAGGA-TTGATGCT-TATGAA-GGCGAGCTTGGAG 727
| || || | |||||||| ||||||| || | || || | | || || || ||||||
Sbjct 738 AGGATGTGGTAATACCTTACTCTCATA-GAGTCAAT-CTCT-TCAATGGAGAAATTGGAG 794
Query 728 TTAAGCAGAGGACCAAC-TTGTTGTTCTTCATGGGAAATCGATATCGCAAAGATGGAGGC 786
| || | | | | || || | |||||||||||||||||||||||||||||||| ||
Sbjct 795 TGCAGGATCGCAAC-ACATTACTCTTCTTCATGGGAAATCGATATCGCAAAGATGGTGGA 853
Query 787 AAAGTCCGAGATTTGCTTTTC-AAGCTGCTTGAGAAAG-AAGAGGATGTTGTGATCAAAC 844
||||| || |||||||||||| ||| | ||||| |||| |||| ||||| || ||||
Sbjct 854 AAAGTTCGTGATTTGCTTTTCCAAGTT-CTTGA-AAAGGAAGATGATGTAACAATAAAAC 911
Query 845 GCGGAACACAGTCAAGAGAGAATATG-CGTGCGGTTAA-ACAAGGAATGCATACGTCTAA 902
||||| || || |||||||| | || || | || | ||||||||||||| || ||
Sbjct 912 ATGGAACTCAATCCAGAGAGAACC-GACGAGCTGCTACGA-AAGGAATGCATACTTCAAA 969
Query 903 GTTTTGTCTACATC-TAGCTGGTGATACTTCTTCTGCTTGCAGATTATTTGA-TGCCATT 960
||||||| || ||| | || ||||| ||| | ||||| |||||| | ||||| | |||||
Sbjct 970 GTTTTGTTTAAATCCT-GCGGGTGACACTCCATCTGCCTGCAGACTCTTTGACT-CCATT 1027
Query 961 G-CTAGTTTATGTGT-CCCGGTGATTGTAAGCGATGGGATTGAGCTACCTTTTGAAGATG 1018
| | ||||| ||||| |||| ||||||| |||||| || ||| ||||||| |||||||
Sbjct 1028 GTC-AGTTTGTGTGTGCCCG-TGATTGTTAGCGATAACATCGAGTTACCTTTCGAAGATG 1085
Query 1019 TCATAGATTACAGGAAGTTCTCTATATTC-TTGAGGAGAGATGCCGCTTTGAAACCAGGG 1077
| |||||||| || ||||| || || || |||||| | |||| ||| || | || ||
Sbjct 1086 TTATAGATTATAGAAAGTTTTCGATTTTTGTTGAGGCCA-ATGCAGCTCTGCAGCCCGGT 1144
Query 1078 TTTGTGGTTAAGAAGCTGAGGAAAGTGAAA-CCAGGAAAGATTTTGAAGTACCAAA-AG- 1134
||| |||| ||| |||||||||| | ||| ||| ||| ||| || |||| || | ||
Sbjct 1145 TTTCTGGTGCAGATGCTGAGGAAAATTAAAACCAAGAA-GATCCTGGAGTATCAGAGAGA 1203
Query 1135 GTTATGAAAGAGGTTAGGCGATATTTTGACTAT-ACACATCTAAATGGAAGT-GTGAACG 1192
| ||| || ||| || || |||||||||||| ||| | | ||||||| | ||||| |
Sbjct 1204 G--ATGCAATCGGTAAGACGGTATTTTGACTATGACA-ACCCAAATGGA-GCAGTGAAGG 1259
Query 1193 AGATCTGGAGACAAGT-TACTAAGAAGATACCGCTAATCAAACTGATGATTAA 1244
| |||||| | ||||| | | ||||| |||| || |||||||| |||| |||
Sbjct 1260 AAATCTGGCGTCAAGTCT-CGCAGAAGTTACCACTCATCAAACTAATGAGTAA 1311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82160658465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5