BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44950.1
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494489 jgi|Araly1|494489|fgenesh2_kg.8__305__AT5G44950.1 1844 0.0
Ahg494488 jgi|Araly1|494488|fgenesh2_kg.8__304__AT5G44970.1 510 8e-144
Ahg481654 jgi|Araly1|481654|fgenesh2_kg.4__714__AT2G27505.1 185 6e-46
> Ahg494489 jgi|Araly1|494489|fgenesh2_kg.8__305__AT5G44950.1
Length=1324
Score = 1844 bits (998), Expect = 0.0
Identities = 1226/1333 (92%), Gaps = 27/1333 (2%)
Strand=Plus/Plus
Query 1 ATGGGGCGCGATAGGATCAGCGAATTACCAGATGGTTTGCTAAATCATATACTCATGTAC 60
|||||||||||||| || |||||||| || ||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGCGCGATAGAATAAGCGAATTGCCGGATGGTTTGCTAAATCATATACTCATGTAC 60
Query 61 CTTCACATCGAAGAATCTATTAGGACAAGTGTTTTATCTAGCAGATGGAGAAAAC-TCTG 119
|||||||| |||||||||||||||||||| |||||||||||||||||||| | || ||||
Sbjct 61 CTTCACATAGAAGAATCTATTAGGACAAGCGTTTTATCTAGCAGATGGAG-AGACATCTG 119
Query 120 GCTTAAGGTACCTGGTCTTGACGTGAACGTACATGACTTCCCTGCTGATGGA-AACTTAT 178
||||||||||||||| |||||| | || || ||||||||||||| ||||| | ||||
Sbjct 120 GCTTAAGGTACCTGGGCTTGACCTAAATTTATTTGACTTCCCTGCTCATGGAGTA-TTAT 178
Query 179 TTGAGAGCTTGATGGACAAGTTTCTTGAGGTTAACCGCGGACGCCTACAAAATTTCAAGT 238
||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 179 TTGGGAGCTTGATGGACAAGTTTCTTGAGGTTAACAGCGGACGCCTACAAAAGTTCAAGT 238
Query 239 TAAACTATG-AAA-G-----TA--ATT-TGTATTATCTAATG-GACAGATTTGTGCCGTG 287
|||| |||| ||| | || ||| | |||||||||| | |||||||||||||||||
Sbjct 239 TAAAGTATGAAAATGAACCATATTATTAT-TATTATCTAA-GCGACAGATTTGTGCCGTG 296
Query 288 GATCGCTACAGTCGTTGATCGCGGTATTCAGCATCTAGATGTTACGGCCACTG-ATTGTC 346
|||||||||||| ||||||||||||||||||||||||||||||||| |||| | || |
Sbjct 297 GATCGCTACAGTTGTTGATCGCGGTATTCAGCATCTAGATGTTACGACCAC-GAATAATG 355
Query 347 CTCC-ATGGACCATTGATTTTATGCCTGCCAACATTTGCAAGAGCAAGACGTTGGTGTCT 405
|||| || ||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 356 CTCCAAT-GACCATTGATTTTATGCCTTCCAACATTTTCAAGAGCAAGACGTTGGTGTCT 414
Query 406 TTAAAGCTCGTAAATGTAGGGCTTGACACTCCAAAGTTTGTTGTTTCTCTACCTTGTCTT 465
||||| |||||||||||||||||||||| ||||||||||||||| ||| ||||||||||
Sbjct 415 TTAAAACTCGTAAATGTAGGGCTTGACAATCCAAAGTTTGTTGTGTCTTTACCTTGTCTC 474
Query 466 AAGATCATGCATCTTGAAGACATTTTTTATAGTCCTTTGATTGCGGAGAACCTCATCTCA 525
||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||
Sbjct 475 AAGATCATGCATCTTGAAGACATTTTTTATAGTCCTTTGATTGTGGAGAAGCTCCTCTCA 534
Query 526 GGCTGTCCTGTTCTTGAAGATCTTACCATTGTAAGGAATCATGAGGATTTTCTT-AACTT 584
|||||||||||||||||||||||||||||||||| || ||||| |||||| || |||||
Sbjct 535 AGCTGTCCTGTTCTTGAAGATCTTACCATTGTAAGAAACCATGAAGATTTT-TTCAACTT 593
Query 585 TCTGCGTGTGATGTCTCAAACTTTGAAGAACTTCCGTTTAACATTTGATTGGGGAATGGG 644
||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 594 TCTGCTTGTGAGGTCTCAAACTTTGAAGACCTTCCGTTTAACATTTGATTGGGAAATGGG 653
Query 645 TAGTAAC-GATTTTTCGGTCGAGATTGATGCACCAGGACTTAAGTACATGAGTTTTAGAG 703
|||| || ||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 654 TAGT-ACAGATTTTTCGGTCGAGATTGATGCTCCAGGACTTAAGTACATGAGCTTTAGAG 712
Query 704 ATAGTCAATCTGATAGAATAGTTGTAAAAAATTTGAGTTCCTTGGTCAAGATAGACCTTG 763
||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 713 ATAGTCAATCTGATAGAATCGTTGTAAAGAATTTGAGCTCCTTGGTCAAGATAGACCTTG 772
Query 764 ATACTGAATTTAATCTCAAGTTTGGCCTCGGCAGTCCTTTGGAACCGGAGGACTTGACTA 823
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 773 ATACTGAATTTAATCTCAAGTTTGGCCTCGGCAGTCCTTTGGAACCGGAGGACTTGACCA 832
Query 824 AGAGAGATATTATCCGAGATTTTCTTACCGGTATTTCGAGTGTCAAACATATGATCATCT 883
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 833 AGAGAGATATTATCCGAGATTTTCTTACCGGTATTTCAAGTGTAAAACATATGATCATCT 892
Query 884 CTCATCCTACTCTGGAGGTGCTTTATCGTTATTCCAAAATCGGACAGCTTCCAAAATTCC 943
| |||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||
Sbjct 893 CCCATCCTACTCTGGAGGTGCTTTATCGATATTCCAAACTCGGACCGCTTCCAAAATTCC 952
Query 944 ATAACTTATATCATTTGCAAGCTGTGTTCTCCAGCTCATTGTTACAACTATTGCCCGCCT 1003
|||||||||||||||||| |||| ||||||||||| |||||||| ||||||| ||| ||
Sbjct 953 ATAACTTATATCATTTGCGGGCTGCGTTCTCCAGCTTATTGTTACCACTATTGTCCGACT 1012
Query 1004 TCCTAGAAATCTGCCCAAATCTAAAAAACCTCATCTTGGACTATTCTATTTCAGCAGAGC 1063
|||| ||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||
Sbjct 1013 TCCTTGAAATCTGCCCAAATCTTAAAAACCTCATCTTGGACTATTCTGTTTCAGCGGAGC 1072
Query 1064 CAGAGCAAATCGACTTTACCAATCTGCCTCGGTGTTTAAT-TTCGACGCTGGAGTACGTT 1122
||||||||||||||||||| ||| |||||| ||||||||| || |||| |||| || |||
Sbjct 1073 CAGAGCAAATCGACTTTACAAATGTGCCTCAGTGTTTAATATT-GACGTTGGAATATGTT 1131
Query 1123 GAGATTAAACAACTTACTATGAGGGAGGAAAGTGGGATTAAATTGGTGAAATACTTTCTT 1182
||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1132 GAGATTAAAGAACTTACTATGAGGGAGGAAACTGGGATTAAATTGGTGAACTACTTTCTT 1191
Query 1183 GAGAATTCAGCAGTCCTCAAGAAACTGACTCTGAGTTTCATAGATTCTCCCATGACCAAC 1242
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1192 GAGAATTCAGCAGTCCTAAAGAAACTGACTCTAAGTTTCATAGATTCTCCCATGACCAAC 1251
Query 1243 CAAGAGTCAGAGATCTACATGCAGCTTCTTACATCAACAAAACGATCTCGTGGGTGTCAT 1302
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1252 CAAGAGTCAGAGATCTACATGCAGCTTCTTACCTCCACAAAACGATCTCGTGGGTGTCAA 1311
Query 1303 GTTTTGATCTTAT 1315
|||||||||||||
Sbjct 1312 GTTTTGATCTTAT 1324
> Ahg494488 jgi|Araly1|494488|fgenesh2_kg.8__304__AT5G44970.1
Length=1158
Score = 510 bits (276), Expect = 8e-144
Identities = 770/996 (77%), Gaps = 83/996 (8%)
Strand=Plus/Plus
Query 285 GTGGATCGCTACAGTC-GTTGATCGCGGTATTCAGCATCTAGATGTTACGGCCACTGATT 343
|||||||||||||| | |||||| |||| ||||| ||||||||| || | | || |
Sbjct 129 GTGGATCGCTACAG-CGGTTGATAGCGGGATTCAACATCTAGAT-TT-C-GAGACCAAAA 184
Query 344 GTCCTCCATG-GAC-CATTGATTTTATGCCTGCCAACATTTGCAAGAGCAAGACGTTGGT 401
|||| | || | || ||||| |||||| || |||| ||||||||||| |||||
Sbjct 185 ATCCT-C-TGCTTCTCAAAGATTTAATGCCTATGAATATTTATAAGAGCAAGACATTGGT 242
Query 402 GTCTTTAAAGCTCGTAAATGTAGGGCTTGA-CACTCCAAAGTTTGTTGTTTCTCTACCTT 460
|||||||||||| ||| |||| |||||| || |||||||||||||||||||||||||
Sbjct 243 GTCTTTAAAGCTTGTATGCGTAGAGCTTGAGAAC-CCAAAGTTTGTTGTTTCTCTACCTT 301
Query 461 GTCTTAAGATCATGCATCTTGAAGACATTT--T-TT---AT-A-G-TCCTTT-GATTGCG 510
|||| |||||| ||||||||||| | |||| | || || | | |||||| | ||| |
Sbjct 302 GTCTCAAGATCTTGCATCTTGAAAAAATTTGGTATTGTTATGATGGTCCTTTAG-TTGTG 360
Query 511 GAGAACCTCATCTCAGGCTGTCCTGTTCTTGAAGATCTTACCATTGTAAGGAATCATGA- 569
||||| |||||| |||| |||||||||||||||||||||||||| ||||||| ||||||
Sbjct 361 GAGAAACTCATCGCAGGGTGTCCTGTTCTTGAAGATCTTACCATGGTAAGGATTCATGAT 420
Query 570 G-G-ATTTTC----T-TAACT-TTCTGCGTGTGATGTCTCAAACTTTGAAGAACTTCCGT 621
| | || | | | | || || | | ||||| ||||| ||| |||||| |||||||
Sbjct 421 GCGGATATACAAGCTCTGCCTCTTTTACATGTGAGGTCTCTGACTCTGAAGATCTTCCGT 480
Query 622 TTAACATTTGATTGGG-GAATGGGTAGTA-ACG-ATTTTTCGGTCGAGATTGATGCACCA 678
|||| ||| ||| || || || || || || ||||| ||| ||||||||||| |||
Sbjct 481 TTAATGTTTAATTTGGAGA-TGACTACTAGACCTATTTT--GGTGGAGATTGATGCTCCA 537
Query 679 GGACTTAAGTA-CATGAGTTTTAGAGATAGTCAATCTGATAGAAT-AGTTGTAAAAAATT 736
||| ||||| | | ||||||| || ||| |||||||||| ||| | | ||||| |||
Sbjct 538 AAACTCAAGTATC-TAAGTTTTAAAGCTAGGCAATCTGATAAAATCA-TGGTAAAGAATC 595
Query 737 TGAGTTCCTTGGTCAAGATAGACCTTGATACTGAATTTAATCTCAAGTTTGGCCTCGGCA 796
||||||| ||| |||||||||||||||||||||| ||| | | | | ||||
Sbjct 596 TGAGTTCATTGTTCAAGATAGACCTTGATACTGA-TTT--T-----G---G-C---GGCA 640
Query 797 GT-CCTTTGGAACCGGAGGACTTGACTAAGAGA-GA--TATTATCCGAGATTTTCTTACC 852
|| |||| |||||| | || || | |||||| || |||||| || || |||| ||
Sbjct 641 GTTCCTT-GGAACCCCATGATTTAAGGAAGAGAAGAGATATTATTCGCGACGTTCTCACT 699
Query 853 GGTATTTCGAGTGTCAA-ACATATGATCATCTCTCATCCTACTCTGGAGGTGCTTT-ATC 910
||||||||||||| || |||||||||||||||||| | |||||| ||||| | | ||
Sbjct 700 TGTATTTCGAGTGT-AAGACATATGATCATCTCTCAACGTACTCTAGAGGT-CATACATG 757
Query 911 GTTATTCCAAAA-TCGGACAGCTTCCAAAATTCCATAACTTATAT-CATTTGCAAG-CTG 967
||||||| |||| |||||| | |||| ||||||||| || || | |||||| ||| | |
Sbjct 758 GTTATTC-AAAACTCGGACCGATTCCCAAATTCCATCACCTA-ACGCATTTG-AAGGCCG 814
Query 968 TGTTCTCCAGCTCATTGTTACAACTATTGCCCGCCTTCCTAGAAATCTGCCCAAATCTAA 1027
||||||||| ||| |||||||||||||| |||||| || || | |||||||||||| |
Sbjct 815 CATTCTCCAGCACATCGTTACAACTATTGCTCGCCTTTCTTGAGAGCTGCCCAAATCTTA 874
Query 1028 AAAACCTCATCTTGGACT-ATTCTATTTCAGCAGAGCCAGAGCAAATCGACT-TTACCAA 1085
|||||||||| ||||||| || || ||||| | |||||||||| |||||| | |||||||
Sbjct 875 AAAACCTCATATTGGACTTAT-CTGTTTCAACGGAGCCAGAGCGAATCGA-TATTACCAA 932
Query 1086 TCTGCCTCGGTGTTTAATTTCGACGCTGGAGTACGTTGAGATTAAACAA-CTTACTATG- 1143
| ||||||||||| ||| |||| ||||||| |||||||||| ||| || | || |
Sbjct 933 TGTGCCTCGGTGTATAACAACGACTCTGGAGTGTATTGAGATTAA-CAAACTGA-TAAGG 990
Query 1144 A-GGGAGGAAAGTGGGATTAAATTGGTGAAATACTTTCTTGAGAATTCAGCAGTCCTCAA 1202
| ||||| ||| |||||||||| | || | || |||||||| |||||| || |||| ||
Sbjct 991 AAGGGAG-AAACTGGGATTAAACTAGTTCAGTATTTTCTTGAAAATTCACCAATCCTTAA 1049
Query 1203 GAAA-CTGACTCTGAGTTTCATAGATTCTCCCATGA 1237
|||| | | |||||||| | ||||||||| ||||
Sbjct 1050 GAAAGCCAAG-CTGAGTTTTACAGATTCTCCTATGA 1084
> Ahg481654 jgi|Araly1|481654|fgenesh2_kg.4__714__AT2G27505.1
Length=993
Score = 185 bits (100), Expect = 6e-46
Identities = 182/221 (82%), Gaps = 8/221 (4%)
Strand=Plus/Plus
Query 1061 AGCCAGAGCAAATCGACTTTACCAATCTGCCTCGGTGT-TTAATTTCGACGCTGGAGTAC 1119
|||||||| |||| ||| |||| ||| ||||||||||| | || |||||||||| |||
Sbjct 737 AGCCAGAGGAAATGGACCTTACTAATGTGCCTCGGTGTATGAA-ATCGACGCTGGTGTAT 795
Query 1120 GTTGAGATTAAAC-AACTTACT-ATGAGGGAGGAAAGTGGGATTAAATTGGTGAAATACT 1177
||| ||| | ||| |||| | | | || |||||||| |||||||||| | ||||| ||||
Sbjct 796 GTTAAGA-TCAACAAACTGA-TAACGAAGGAGGAAACTGGGATTAAACTAGTGAATTACT 853
Query 1178 TTCTTGAGAATTCAGCAGTCCTCAAGAAACTGACTCTGAGTTTCATAGATTCTCCCATG- 1236
||||||||||||||||||||||||||||||||||| || ||||| | ||||| | |||
Sbjct 854 TTCTTGAGAATTCAGCAGTCCTCAAGAAACTGACTATGTTTTTCACACATTCTTCTATGG 913
Query 1237 ACCAACCAAGAGTCAGAGATCTACATGCAGCTTCTTACATC 1277
| | |||||| |||||| ||||||| |||||||||||||
Sbjct 914 AG-ATTCAAGAGCCAGAGAGCTACATGAAGCTTCTTACATC 953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49254808764
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5