BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44970.1
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494488 jgi|Araly1|494488|fgenesh2_kg.8__304__AT5G44970.1 1393 0.0
Ahg915673 jgi|Araly1|915673|Al_scaffold_0008_424 318 5e-86
Ahg915675 jgi|Araly1|915675|Al_scaffold_0008_426 217 2e-55
Ahg948577 jgi|Araly1|948577|scaffold_800464.1 169 5e-41
Ahg915672 jgi|Araly1|915672|Al_scaffold_0008_423 165 7e-40
Ahg915674 jgi|Araly1|915674|Al_scaffold_0008_425 159 3e-38
> Ahg494488 jgi|Araly1|494488|fgenesh2_kg.8__304__AT5G44970.1
Length=1158
Score = 1393 bits (754), Expect = 0.0
Identities = 1048/1182 (89%), Gaps = 51/1182 (4%)
Strand=Plus/Plus
Query 1 ATGCGAAACGATATAATCAGCGAACTTCCAGATTCTTTGATAACTCAGATTCTTTTATGG 60
||| ||||||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 1 ATGAGAAACGATATAATCAGCGAACTTCCGGAATCTTTGATAACTCAGATACTTTTATGG 60
Query 61 CTTCCAACCAAAGATTC-AGTTAAGACAAGTG-TTTATCGACCAGATGGAGAAATCTTTG 118
||||| ||||||||||| | |||| ||||||| |||||||||||||||||||||||||||
Sbjct 61 CTTCCGACCAAAGATTCTA-TTAAAACAAGTGTTTTATCGACCAGATGGAGAAATCTTTG 119
Query 119 GCTTGAAGTTCCAGGAGTGGATCGCCGCAGCGGTTGATCGCGGGATTCAACATTTAGATT 178
|||| || | ||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 120 GCTT-AA--T----GAGTGGATCGCTACAGCGGTTGATAGCGGGATTCAACATCTAGATT 172
Query 179 TCGAGACCAAAAATCCTTCTCTCTTTCTCAAAGATTCCATGCCTATGAACATTTATAAGA 238
|||||||||||||||| ||| | |||||||||||| ||||||||||| ||||||||||
Sbjct 173 TCGAGACCAAAAATCC-TCT-GC-TTCTCAAAGATTTAATGCCTATGAATATTTATAAGA 229
Query 239 GTAAGACATTGGTGTCTTTAAAGCTTGTATGCGTAGAGCTTGAGAATCCAAAGTTTGTTG 298
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 230 GCAAGACATTGGTGTCTTTAAAGCTTGTATGCGTAGAGCTTGAGAACCCAAAGTTTGTTG 289
Query 299 TTTCTCTACCTTGTCTCAAGATCATGCATCTAGAAAATAATT-GGTACGGTTATGATGCT 357
||||||||||||||||||||||| ||||||| ||||| |||| |||| ||||||||| |
Sbjct 290 TTTCTCTACCTTGTCTCAAGATCTTGCATCTTGAAAA-AATTTGGTATTGTTATGATGGT 348
Query 358 CCTTTGGTTGTGGAGAAACTCATCGCAGGGTGTCTTGTTCTTGAAGATCTTACCGTGGTA 417
||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 349 CCTTTAGTTGTGGAGAAACTCATCGCAGGGTGTCCTGTTCTTGAAGATCTTACCATGGTA 408
Query 418 AGGATTCATGATATGG-TAATACCAGATCTGCCTCTTCTACATGTGAAGTCTCTGACACT 476
|||||||||||| || || ||| || |||||||||| ||||||||| ||||||||| ||
Sbjct 409 AGGATTCATGATGCGGATA-TACAAGCTCTGCCTCTTTTACATGTGAGGTCTCTGACTCT 467
Query 477 GAAGATCTTACGTTTAGTGTTTGATTTGGAGATGATGACTACTATACCTATTTCGGTGGA 536
||||||||| |||||| ||||| |||||||||||| |||||| |||||||| ||||||
Sbjct 468 GAAGATCTTCCGTTTAATGTTTAATTTGGAGATGA---CTACTAGACCTATTTTGGTGGA 524
Query 537 GATTGATGCTCCAAAACT-AGAGTATATGAGTTTTATAAA-TAGGCACTCTGATACAATC 594
|||||||||||||||||| | ||||| | ||||||| || |||||| ||||||| ||||
Sbjct 525 GATTGATGCTCCAAAACTCA-AGTATCTAAGTTTTA-AAGCTAGGCAATCTGATAAAATC 582
Query 595 ATGGTAAAGAATCTGAGTTCATTGTTCAAGTTAAATCTTGATACTGAATTTGGCTACAGT 654
|||||||||||||||||||||||||||||| || | ||||||||||| |||||| ||||
Sbjct 583 ATGGTAAAGAATCTGAGTTCATTGTTCAAGATAGACCTTGATACTGATTTTGGCGGCAGT 642
Query 655 TCCTTGGAACC----GA-----G-A-GA-------TATTATCCGTGACGTTCTCACTGGT 696
||||||||||| || | | || |||||| || |||||||||||| ||
Sbjct 643 TCCTTGGAACCCCATGATTTAAGGAAGAGAAGAGATATTATTCGCGACGTTCTCACTTGT 702
Query 697 ATATCGAGTGTAAGACAGATGATCATCTCTCAACGTACTCTAGAGGTCATATGTCGTTAT 756
|| |||||||||||||| ||||||||||||||||||||||||||||||||| | |||||
Sbjct 703 ATTTCGAGTGTAAGACATATGATCATCTCTCAACGTACTCTAGAGGTCATACATGGTTAT 762
Query 757 TCAAAACTCGGGCCTATTCCCAAATTCCATCACCTATCTCATTTGAAGGCTGCATTCTCC 816
||||||||||| || ||||||||||||||||||||| | ||||||||||| |||||||||
Sbjct 763 TCAAAACTCGGACCGATTCCCAAATTCCATCACCTAACGCATTTGAAGGCCGCATTCTCC 822
Query 817 AGCACATCATTACAACTATTGCCCGCCTTTCTTGAGAGCTGCCCAAACCTGAAAAAACTC 876
|||||||| ||||||||||||| |||||||||||||||||||||||| || ||||| |||
Sbjct 823 AGCACATCGTTACAACTATTGCTCGCCTTTCTTGAGAGCTGCCCAAATCTTAAAAACCTC 882
Query 877 ATCTTGGACTTATATGTTTCAGCGGAGCCAGAG-GAAATCGATCTTACCAATGTGCCTCG 935
|| |||||||||| ||||||| ||||||||||| ||| ||||| ||||||||||||||||
Sbjct 883 ATATTGGACTTATCTGTTTCAACGGAGCCAGAGCGAA-TCGATATTACCAATGTGCCTCG 941
Query 936 GTGTATAACATCGACTCTGGAGTGTATTGAGATTAACAAACTGATTAGGAAGGAAGCAAC 995
|||||||||| |||||||||||||||||||||||||||||||||| ||||||| || |||
Sbjct 942 GTGTATAACAACGACTCTGGAGTGTATTGAGATTAACAAACTGATAAGGAAGGGAGAAAC 1001
Query 996 TGGGGTTAAACTAGTTCATTATTTTCTTGAGAATTCACCAATCCTTAAGAAA-CTCAAGC 1054
|||| ||||||||||||| ||||||||||| ||||||||||||||||||||| | |||||
Sbjct 1002 TGGGATTAAACTAGTTCAGTATTTTCTTGAAAATTCACCAATCCTTAAGAAAGC-CAAGC 1060
Query 1055 CGAGTTTCACAGATTCTCCTATGAGTACTATGACCAATCTACCGTTAGATCATCTCTATA 1114
|||||| ||||||||||||||||||| | |||||||||||||||||||| ||| |
Sbjct 1061 TGAGTTTTACAGATTCTCCTATGAGTA-T--GACCAATCTACCGTTAGATCGGGTCT-TC 1116
Query 1115 AA-ATGTATCTTACAGCCAGAAAGCGTTCTCGCAGATGTCAA 1155
|| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1117 AAGATGTATCTTACATCCAGAAAGCGTTCTCGCAGATGTCAA 1158
> Ahg915673 jgi|Araly1|915673|Al_scaffold_0008_424
Length=579
Score = 318 bits (172), Expect = 5e-86
Identities = 354/439 (81%), Gaps = 23/439 (5%)
Strand=Plus/Plus
Query 217 ATGCCTATGAACAT-TTATAAGAGTAAGACATTGGTGTCTTTAAAGCTTGTATGCGTAGA 275
|||||||||||||| || | |||| ||||||||||||||| ||| ||||| | |||||
Sbjct 1 ATGCCTATGAACATGTT-TCAGAGCAAGACATTGGTGTCTATAAGGCTTGCAAATGTAGA 59
Query 276 GCTTGAGAATCCAAAG-T-TTGTTGTTTCTCTACCTTGTCTCAAGATCATGCATCTAGAA 333
|||||| ||| |||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GCTTGAAAAT--AAAGATATTGTTGTTTCTCTACCTTGTCTCAAGATCATGCATCTAGAT 117
Query 334 AATAATTGGTACGGTTATGATGCTCCTTTGGTTGTGGAGAAACTCATCGCAGGGTGTCTT 393
|| | ||| |||||| | |||| ||||||| |||||||||| |||||| | || |||| |
Sbjct 118 AACATTTGTTACGGTGAGGATGGTCCTTTGATTGTGGAGAAGCTCATCTCTGGATGTCCT 177
Query 394 GTTCTTGAAGATCTTACCGTGGTAAGGATTCA-TGAT-ATGGTAATACCAGAT-CT--GC 448
|||||||||||||||||||| ||||||||| | | || | || | | | ||| || ||
Sbjct 178 GTTCTTGAAGATCTTACCGTCGTAAGGATTTACT-ATGA-GG-A-T-CTAGAAACTATGC 232
Query 449 CTCTTCTACATGTGAAGTCTCTGACACTGAAGATCTTACGTT-TAGTGTTTGATTTGGAG 507
| || | | |||||| |||| ||| |||||| |||| | || || ||||| | | || |
Sbjct 233 CAGTTTTGCGTGTGAAATCTCAGACTCTGAAGGTCTTCCATTATA-TGTTTAAATGGG-G 290
Query 508 ATGATGACTACTATACCTATTTCGGTGGAGATTGATGCTCCAAAACT-AGAGTATATGAG 566
| ||| |||||| | | ||||||| |||||||||||||| |||| | |||| |||||
Sbjct 291 A--ATGCCTACTACATATTTTTCGGTTGAGATTGATGCTCCGGAACTTA-AGTACATGAG 347
Query 567 TTTTATAAATAGGCACTCTGATACAATCATGGTAAAGAATCTGAGTTCATTGTTCAAGTT 626
|||| | |||| || ||||||| |||| |||| ||||| |||||||| ||||||||| |
Sbjct 348 GTTTAGAGATAGTCAATCTGATAAAATCTTGGTTAAGAACCTGAGTTCCTTGTTCAAGAT 407
Query 627 AAATCTTGATACTGAATTT 645
| ||||||| |||||||||
Sbjct 408 AGATCTTGACACTGAATTT 426
> Ahg915675 jgi|Araly1|915675|Al_scaffold_0008_426
Length=429
Score = 217 bits (117), Expect = 2e-55
Identities = 231/284 (81%), Gaps = 15/284 (5%)
Strand=Plus/Plus
Query 136 TGGATCGCCGCAGCGGTTGATCGCGGGATTCAACATT-TAGAT-TTCGAGACCAAAAATC 193
||||||||| ||||||||||||||||| ||| | || | ||| || ||| | || |||
Sbjct 79 TGGATCGCCACAGCGGTTGATCGCGGGGTTCGA-GTTCTTGATGTT-GAGGCTAAGAAT- 135
Query 194 CTTCTCTCTTTCTCAAAGATTCCATGCCTATGAACAT-TTATAAGAGTAAGACATTGGTG 252
| ||| ||| ||| ||| |||||||| ||||||| || |||| || |||||||||
Sbjct 136 -GT-TCTGTTTGTCATTGATACCATGCCTTTGAACATGTT-CCAGAGCAAAACATTGGTG 192
Query 253 TCTTTAAAGCTTGTATGCGTAGAGCTTGAGAATCCAAAG-T-TTGTTGTTTCTCTACCTT 310
||||||| ||||| | ||||||||||| ||| | ||| | ||||||||||||||||||
Sbjct 193 TCTTTAAGGCTTGCAAATGTAGAGCTTGAAAAT-C-AAGATATTGTTGTTTCTCTACCTT 250
Query 311 GTCTCAAGATCATGCATCTAGAAAATAATTGGTACGGTTATGATGCTCCTTTGGTTGTGG 370
|||||||||||||||||||||| || | ||| |||||| | |||| ||||||| ||| ||
Sbjct 251 GTCTCAAGATCATGCATCTAGATAACATTTGTTACGGTGAGGATGGTCCTTTGATTGCGG 310
Query 371 AGAAACTCATCGCAGGGTGT-CTTGTTCTTGAAGATCTTACCGT 413
|||| |||||| | || ||| || ||||||||||||||||||||
Sbjct 311 AGAAGCTCATCTCTGGATGTTCT-GTTCTTGAAGATCTTACCGT 353
> Ahg948577 jgi|Araly1|948577|scaffold_800464.1
Length=839
Score = 169 bits (91), Expect = 5e-41
Identities = 157/188 (84%), Gaps = 8/188 (4%)
Strand=Plus/Plus
Query 225 GAACATTTATAAGAGTAAGACATTGGTGTCTTTAAAGCTTGTATGCGTAGAGCTT-GAGA 283
||||||||| ||||| ||||||||||| ||||| || |||||| ||||| || |||
Sbjct 290 GAACATTTACAAGAGCAAGACATTGGTCTCTTTGAACCTTGTAAATATAGAG-TTAAAGA 348
Query 284 ATCCAAAGTTTGTTGTTTCTCTACCTTGTCTCAAGATCATGCATCTA-GAAAA-TAATTG 341
| ||| |||||||||||||||||||||||||||||||||||| |||| | || | |||
Sbjct 349 AACCAGAGTTTGTTGTTTCTCTACCTTGTCTCAAGATCATGCGTCTATGCAACGT--TTG 406
Query 342 GTACGGTTATGATGCTCCT-TTGGTTGTGGAGAAACTCATCGCAGGGTGTCTTGTTCTTG 400
|||||| | |||| |||| ||| |||||||||| |||||| |||| |||| ||||||||
Sbjct 407 TTACGGTGAGGATGGTCCTATTG-TTGTGGAGAAGCTCATCTCAGGATGTCCTGTTCTTG 465
Query 401 AAGATCTT 408
||||||||
Sbjct 466 AAGATCTT 473
> Ahg915672 jgi|Araly1|915672|Al_scaffold_0008_423
Length=510
Score = 165 bits (89), Expect = 7e-40
Identities = 157/189 (83%), Gaps = 8/189 (4%)
Strand=Plus/Plus
Query 225 GAACATTTATAAGAGTAAGACATTGGTGTCTTTAAAGCTTGT--ATGCGTAGAGCTT-GA 281
||||||||| ||||| ||||||||||| ||||| |||||| | || | ||||| || |
Sbjct 87 GAACATTTACAAGAGCAAGACATTGGTCTCTTTGAAGCTTTTCAAT-C-TAGAG-TTAAA 143
Query 282 GAATCCAAAGTTTGTTGTTTCTCTACCTTGTCTCAAGATCATGCATCTAGAAAATAATTG 341
||| ||| ||||||||| |||||||||||||||||||||||||||||||| | | ||
Sbjct 144 GAAACCAGAGTTTGTTGCTTCTCTACCTTGTCTCAAGATCATGCATCTAGGCAG-AGTTT 202
Query 342 GTA-CGGTTATGATGCTCCTTTGGTTGTGGAGAAACTCATCGCAGGGTGTCTTGTTCTTG 400
|| |||| | |||| |||||||||||||||||| |||||| |||| |||| || |||||
Sbjct 203 GTCGCGGTGAGGATGGTCCTTTGGTTGTGGAGAAGCTCATCTCAGGATGTCCTGCTCTTG 262
Query 401 AAGATCTTA 409
|| ||||||
Sbjct 263 AATATCTTA 271
> Ahg915674 jgi|Araly1|915674|Al_scaffold_0008_425
Length=774
Score = 159 bits (86), Expect = 3e-38
Identities = 503/694 (72%), Gaps = 70/694 (10%)
Strand=Plus/Plus
Query 225 GAACATTTATAAGAGTAAGACATTGGTGTCTTTAAAGCTTGT--ATGCGTAGAGCTT-GA 281
||||||||| ||||| ||||||||||| | ||| || ||| | || |||||| || |
Sbjct 93 GAACATTTACAAGAGCAAGACATTGGTCTTTTTGAACCTTTTCAAT--GTAGAG-TTAAA 149
Query 282 GAATCCAAAGTTTGTTGTTTCTCTACCTTGTCTCAAGATCATGCATCTAGAAAATAATTG 341
||||||||||||||||||||||||||||| |||||||||||||| ||||| | | ||
Sbjct 150 GAATCCAAAGTTTGTTGTTTCTCTACCTTATCTCAAGATCATGCGTCTAGGCAG-AGTTT 208
Query 342 GTA-CGGTTATGATGCTCCTTTGGTTGTGGAGAAACTCATCGCAGGGTGTCTTGTTCTTG 400
|| |||| | |||| |||| ||||| | ||||| |||||| |||| |||| ||||||||
Sbjct 209 GTCGCGGTGAGGATGGTCCTCTGGTTCTTGAGAAGCTCATCTCAGGATGTCCTGTTCTTG 268
Query 401 AAGATCTTAC-CGTGGTAAGGA-TTCATGATA-TGGTAA-T-ACCA-GATCTGCCTCTT- 453
||||||||| | || | ||| || ||||| | | | | || | | | ||| | ||
Sbjct 269 AAGATCTTAAGC-TGATTAGGCCTTT-TGATACTT-TGACTCACAAAGTTTTGC-TGTTT 324
Query 454 CTACATGTGAAG-TCTCTGACACTGAAGATC-TTACGTTTAGTGTTT-G--ATTTGGAGA 508
|| | ||||| | |||| ||| ||||| | | || ||||| | ||| | | | | |
Sbjct 325 CTGCGTGTGA-GCTCTCAGACTCTGAAAAACCTTG-GTTTA-TATTTTGCGACATATA-A 380
Query 509 TGATGACTACTATACCTATTTCGGTGGAGATTGATGCTCCAAAACT-AGAGTATATGAGT 567
| ||| ||| | | | |||| || ||||||||||||||| ||| | ||||||||| |
Sbjct 381 GGGTGA-TAC-AGAT-T-TTTCAGTTGAGATTGATGCTCCACGACTCA-AGTATATGACT 435
Query 568 TTTATAA-ATAGGCACTCTGATA-CAATCATGGTAAAGAATCTGAGTTCATTGTTCAAGT 625
||| || | | || ||||||| || | |||||||||| ||||| || ||||||| |
Sbjct 436 GTTA-AAGACATTCAATCTGATAACATTG-TGGTAAAGAACCTGAGCTCCTTGTTCATGA 493
Query 626 TAAATC-TT-GATACTGAAT-T-TGGC-TAC-AGTTCCTT-GGAACCG-AGAGATATTAT 677
| || | || | ||| ||| | | | | | || ||| ||| | | | | ||| |
Sbjct 494 TCAA-CATTCG-TACCAAATATATTCCAT-CGAGA-CCTAAGGA-CTTTAAAAA-ATTTT 547
Query 678 CCGTGACGTTCTCACTGGTATATCGAGTGTAAGACAGATGATCATCT-CTCAACGTACTC 736
|||| || | || || ||||| ||||||||||| ||||| ||| | | | || ||
Sbjct 548 --GTGATTTTTTTACCGGCATATCTAGTGTAAGACATATGATAATCGAC-CTGCCTATTC 604
Query 737 TAGAG-GTCATATGTCGTTATTCAAAACT-CGGGCCTATTCCCAAATTCCATCACCTATC 794
||||| | | | | | | ||| | |||| ||| || ||||||||||||| | || | |
Sbjct 605 TAGAGAGGCTT-TACCCTAATT-ACAACTTCGGACCGATTCCCAAATTCCTTAACTTGTA 662
Query 795 TCATTTGAAGGCTGCATTCTCCAGCAC-ATCAT---TACAACTATTGCCCGCCTTTCTTG 850
| ||||| |||||| | || ||| | ||||| ||||||||||| | ||||||||||
Sbjct 663 TTATTTGGAGGCTG-AGG-TC-AGC-CGATCATCGCTACAACTATTGTCGGCCTTTCTTG 718
Query 851 AGAGCTGC-CCAAACCTGAAAAAACTCATCTTGG 883
| |||| | ||||| ||||||| ||||| ||||
Sbjct 719 AAAGCT-CTCCAAATCTGAAAACCCTCATTTTGG 751
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43650739965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5